RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 C2orf48Q96LS8 159 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 TP53TG3Q9ULZ0 132 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 PROP1O75360 226 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 MRPL55Q7Z7F7 128 aaKnown RBP3.2□□□□□ -1.9
VPS13C-202ENST00000261517 LOC400499M0QZD8 3231 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 C5orf38Q86SI9 138 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 POLR2KP53803 58 aaKnown RBP3.2□□□□□ -1.9
VPS13C-202ENST00000261517 Q6JHZ5 121 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 MAPK1IP1LQ8NDC0 245 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 CHCHD10Q8WYQ3 142 aaPredicted RBP3.2□□□□□ -1.9
VPS13C-202ENST00000261517 PRAC2D3DTV9 90 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 Q6ZQT7 251 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 MIR7-3HGQ8N6C7 128 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 E7EUB6 86 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 NRACQ8N912 160 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 ZNF625Q96I27 306 aaPredicted RBP3.2□□□□□ -1.9
VPS13C-202ENST00000261517 J3KT08 172 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 FOXI1Q12951 378 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 NTN5Q8WTR8 489 aaPredicted RBP3.2□□□□□ -1.9
VPS13C-202ENST00000261517 PLA2G2EQ9NZK7 142 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 LINC01546A6NGU7 62 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 RPL37AP8A6NKH3 93 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 ANKRD39Q53RE8 183 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 MRAPQ8TCY5 172 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 ZZEF1O43149 2961 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 ITPR2Q14571 2701 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 IGLV1-51P01701 117 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 EGFEM1PQ0D2K5 195 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 MUC4Q99102 2169 aa3.2□□□□□ -1.9
VPS13C-202ENST00000261517 SEC61GP60059 68 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 ASPHD1Q5U4P2 390 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 KLK12Q9UKR0 248 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 A0A0J9YY99 117 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 UNC79Q9P2D8 2635 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 TCL1BO95988 128 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 ZNF22P17026 224 aaPredicted RBP3.19□□□□□ -1.9
VPS13C-202ENST00000261517 UBE2D3P61077 147 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 UBE2D2P62837 147 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 SYCNQ0VAF6 134 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 FHL3Q13643 280 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 Q6ZUT4 128 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 SPTSSBQ8NFR3 76 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 LINC01006Q8NI28 216 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 Q6Q795 121 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 NAA38Q9BRA0 125 aaKnown RBP3.19□□□□□ -1.9
VPS13C-202ENST00000261517 ATMQ13315 3056 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 G3V4G9 280 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 TRBV7-6A0A0J9YX20 115 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 LINC00308Q8TCZ7 52 aa3.19□□□□□ -1.9
VPS13C-202ENST00000261517 MYO15AQ9UKN7 3530 aa3.18□□□□□ -1.9
VPS13C-202ENST00000261517 PRR15LQ9BU68 103 aa3.18□□□□□ -1.9
VPS13C-202ENST00000261517 MRPS12O15235 138 aaKnown RBP3.18□□□□□ -1.9
VPS13C-202ENST00000261517 UBE2D1P51668 147 aa3.18□□□□□ -1.9
VPS13C-202ENST00000261517 RPL39P62891 51 aaKnown RBP3.18□□□□□ -1.9
VPS13C-202ENST00000261517 Q6ZPA2 131 aa3.18□□□□□ -1.9
VPS13C-202ENST00000261517 TAX1BP3O14907 124 aa3.18□□□□□ -1.9
VPS13C-202ENST00000261517 UQCRQO14949 82 aa3.18□□□□□ -1.9
VPS13C-202ENST00000261517 SETXQ7Z333 2677 aaKnown RBP3.18□□□□□ -1.9
VPS13C-202ENST00000261517 C20orf173Q96LM9 149 aa3.18□□□□□ -1.9
VPS13C-202ENST00000261517 MSRB1Q9NZV6 116 aa3.18□□□□□ -1.9
VPS13C-202ENST00000261517 TACC2O95359 2948 aa3.18□□□□□ -1.9
VPS13C-202ENST00000261517 CHKB-CPT1BH3BT56 60 aa3.18□□□□□ -1.9
VPS13C-202ENST00000261517 PRYO14603 147 aa3.18□□□□□ -1.9
VPS13C-202ENST00000261517 FXYD2P54710 66 aa3.18□□□□□ -1.9
VPS13C-202ENST00000261517 A0A087WZ39 114 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 BPY2O14599 106 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 LY6G6DO95868 133 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 RNASE3P12724 160 aaKnown RBP3.17□□□□□ -1.9
VPS13C-202ENST00000261517 Q9HAA7 133 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 TSHBP01222 138 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 LINC00173Q6ZV60 143 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 LECT2O14960 151 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 LINC00269Q8N2A0 174 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 UBE2D4Q9Y2X8 147 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 Q6ZTI0 123 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 CFAP47Q6ZTR5 3102 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 MGAM2Q2M2H8 2515 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 TRAV23DV6A0A075B6W5 121 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 BCE1O60756 84 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 ZNF80P51504 273 aaPredicted RBP3.17□□□□□ -1.9
VPS13C-202ENST00000261517 K7ERJ3 54 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 IGHV3-30P01768 117 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 IGHV3-33P01772 117 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 IGHV3-30-5P0DP03 117 aa3.17□□□□□ -1.9
VPS13C-202ENST00000261517 NDUFC2-KCTD14E9PQ53 114 aa3.16□□□□□ -1.9
VPS13C-202ENST00000261517 TEX15Q9BXT5 2789 aa3.16□□□□□ -1.9
VPS13C-202ENST00000261517 LST1O00453 97 aa3.16□□□□□ -1.9
VPS13C-202ENST00000261517 KPRPQ5T749 579 aaPredicted RBP3.16□□□□□ -1.9
VPS13C-202ENST00000261517 C19orf84I3L1E1 186 aa3.16□□□□□ -1.9
VPS13C-202ENST00000261517 RPL28P46779 137 aaKnown RBP3.16□□□□□ -1.9
VPS13C-202ENST00000261517 RBX1P62877 108 aa3.16□□□□□ -1.9
VPS13C-202ENST00000261517 STAB1Q9NY15 2570 aa3.16□□□□□ -1.9
VPS13C-202ENST00000261517 CRIP1P50238 77 aa3.16□□□□□ -1.9
VPS13C-202ENST00000261517 WFDC11Q8NEX6 87 aa3.16□□□□□ -1.9
VPS13C-202ENST00000261517 IGHV4-28A0A0C4DH34 117 aa3.16□□□□□ -1.9
VPS13C-202ENST00000261517 AMELXQ99217 191 aa3.16□□□□□ -1.9
VPS13C-202ENST00000261517 TEP1Q99973 2627 aaKnown RBP3.16□□□□□ -1.9
VPS13C-202ENST00000261517 CLPSL2Q6UWE3 100 aa3.16□□□□□ -1.9
VPS13C-202ENST00000261517 POM121L12Q8N7R1 296 aa3.16□□□□□ -1.9
VPS13C-202ENST00000261517 IGIPA6NJ69 53 aa3.15□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms