RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 I3L3M4 83 aa8.9□□□□□ -0.98
PNKP-218ENST00000625299 IGLV7-43P04211 117 aa8.9□□□□□ -0.98
PNKP-218ENST00000625299 FOXA3P55318 350 aaPredicted RBP8.9□□□□□ -0.98
PNKP-218ENST00000625299 SMIM15Q7Z3B0 74 aa8.9□□□□□ -0.98
PNKP-218ENST00000625299 NUP35Q8NFH5 326 aa8.9□□□□□ -0.98
PNKP-218ENST00000625299 MRAP2Q96G30 205 aa8.9□□□□□ -0.98
PNKP-218ENST00000625299 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.89□□□□□ -0.99
PNKP-218ENST00000625299 MEF2BQ02080 365 aaPredicted RBP8.89□□□□□ -0.99
PNKP-218ENST00000625299 NUDT10Q8NFP7 164 aa8.89□□□□□ -0.99
PNKP-218ENST00000625299 SMIM12Q96EX1 92 aa8.89□□□□□ -0.99
PNKP-218ENST00000625299 NUDT11Q96G61 164 aa8.89□□□□□ -0.99
PNKP-218ENST00000625299 TMEM242Q9NWH2 141 aa8.89□□□□□ -0.99
PNKP-218ENST00000625299 TRBV20OR9-2A0A075B6H5 130 aa8.88□□□□□ -0.99
PNKP-218ENST00000625299 A0A087WZ39 114 aa8.88□□□□□ -0.99
PNKP-218ENST00000625299 H0Y9J4 135 aa8.88□□□□□ -0.99
PNKP-218ENST00000625299 COX7A2LO14548 114 aa8.88□□□□□ -0.99
PNKP-218ENST00000625299 OPRPNQ99935 248 aaPredicted RBP8.88□□□□□ -0.99
PNKP-218ENST00000625299 CNFNQ9BYD5 112 aa8.88□□□□□ -0.99
PNKP-218ENST00000625299 BIN3Q9NQY0 253 aa8.88□□□□□ -0.99
PNKP-218ENST00000625299 BATF3Q9NR55 127 aa8.88□□□□□ -0.99
PNKP-218ENST00000625299 CDC42SE2Q9NRR3 84 aa8.88□□□□□ -0.99
PNKP-218ENST00000625299 BCL2L11O43521 198 aa8.87□□□□□ -0.99
PNKP-218ENST00000625299 TSHBP01222 138 aa8.87□□□□□ -0.99
PNKP-218ENST00000625299 ESDP10768 282 aa8.87□□□□□ -0.99
PNKP-218ENST00000625299 UBE2D1P51668 147 aa8.87□□□□□ -0.99
PNKP-218ENST00000625299 TEX261Q6UWH6 196 aa8.87□□□□□ -0.99
PNKP-218ENST00000625299 RPP21Q9H633 154 aaKnown RBP8.87□□□□□ -0.99
PNKP-218ENST00000625299 MED9Q9NWA0 146 aa8.87□□□□□ -0.99
PNKP-218ENST00000625299 FAT4Q6V0I7 4981 aa8.86□□□□□ -0.99
PNKP-218ENST00000625299 IGLV1-50A0A075B6I6 118 aa8.86□□□□□ -0.99
PNKP-218ENST00000625299 RNASE7Q9H1E1 156 aaKnown RBP8.86□□□□□ -0.99
PNKP-218ENST00000625299 KRTAP9-6A0A140TA67 174 aa8.85□□□□□ -0.99
PNKP-218ENST00000625299 KANTRA0A1W2PQU2 76 aa8.85□□□□□ -0.99
PNKP-218ENST00000625299 ZNF345Q14585 488 aa8.85□□□□□ -0.99
PNKP-218ENST00000625299 RNASE13Q5GAN3 156 aaKnown RBP8.85□□□□□ -0.99
PNKP-218ENST00000625299 ST20Q9HBF5 79 aa8.85□□□□□ -0.99
PNKP-218ENST00000625299 FAM168BA1KXE4 195 aa8.84□□□□□ -0.99
PNKP-218ENST00000625299 C1orf196B1AJZ1 125 aa8.84□□□□□ -0.99
PNKP-218ENST00000625299 PDE6DO43924 150 aa8.84□□□□□ -0.99
PNKP-218ENST00000625299 SPAG11BQ08648 103 aa8.84□□□□□ -0.99
PNKP-218ENST00000625299 C5orf38Q86SI9 138 aa8.84□□□□□ -0.99
PNKP-218ENST00000625299 MRPL52Q86TS9 123 aaKnown RBP8.84□□□□□ -0.99
PNKP-218ENST00000625299 KRTAP11-1Q8IUC1 163 aa8.84□□□□□ -0.99
PNKP-218ENST00000625299 C2orf48Q96LS8 159 aa8.84□□□□□ -0.99
PNKP-218ENST00000625299 TRAV13-1A0A0B4J241 112 aa8.83□□□□□ -1
PNKP-218ENST00000625299 TRAV1-1A0A0B4J248 108 aa8.83□□□□□ -1
PNKP-218ENST00000625299 TRBV6-5A0A0K0K1A5 114 aa8.83□□□□□ -1
PNKP-218ENST00000625299 C7orf77A4D0Y5 90 aa8.83□□□□□ -1
PNKP-218ENST00000625299 FAM19A5Q7Z5A7 132 aaPredicted RBP8.83□□□□□ -1
PNKP-218ENST00000625299 TEX46H3BTG2 121 aa8.82□□□□□ -1
PNKP-218ENST00000625299 KRTAP1-4P0C5Y4 121 aa8.82□□□□□ -1
PNKP-218ENST00000625299 TSKUQ8WUA8 353 aa8.82□□□□□ -1
PNKP-218ENST00000625299 K7EN84 100 aa8.8□□□□□ -1
PNKP-218ENST00000625299 FCER1GP30273 86 aa8.8□□□□□ -1
PNKP-218ENST00000625299 RPL13AP40429 203 aaKnown RBP8.8□□□□□ -1
PNKP-218ENST00000625299 TSPAN13O95857 204 aa8.79□□□□□ -1
PNKP-218ENST00000625299 UBE2BP63146 152 aa8.79□□□□□ -1
PNKP-218ENST00000625299 RNF151Q2KHN1 245 aa8.79□□□□□ -1
PNKP-218ENST00000625299 OCC1Q8TAD7 63 aa8.79□□□□□ -1
PNKP-218ENST00000625299 POLR2KP53803 58 aaKnown RBP8.78□□□□□ -1
PNKP-218ENST00000625299 GAGE2EQ4V326 116 aa8.78□□□□□ -1
PNKP-218ENST00000625299 LCE2AQ5TA79 106 aaPredicted RBP8.78□□□□□ -1
PNKP-218ENST00000625299 ORAOV1Q8WV07 137 aa8.78□□□□□ -1
PNKP-218ENST00000625299 BORCS7Q96B45 105 aa8.78□□□□□ -1
PNKP-218ENST00000625299 IMMP2LQ96T52 175 aa8.78□□□□□ -1
PNKP-218ENST00000625299 GAGE2DQ9UEU5 116 aa8.78□□□□□ -1
PNKP-218ENST00000625299 UBE2D4Q9Y2X8 147 aa8.78□□□□□ -1
PNKP-218ENST00000625299 TRBV27A0A0K0K1C4 114 aa8.77□□□□□ -1.01
PNKP-218ENST00000625299 HMSDA8MTL9 139 aa8.77□□□□□ -1.01
PNKP-218ENST00000625299 GATCO43716 136 aaKnown RBP8.77□□□□□ -1.01
PNKP-218ENST00000625299 Q6ZUT4 128 aa8.77□□□□□ -1.01
PNKP-218ENST00000625299 OR10D4PQ8NGN7 298 aa8.77□□□□□ -1.01
PNKP-218ENST00000625299 FAM210AQ96ND0 272 aa8.77□□□□□ -1.01
PNKP-218ENST00000625299 MRPL35Q9NZE8 188 aaKnown RBP8.77□□□□□ -1.01
PNKP-218ENST00000625299 M0QXV9 152 aa8.76□□□□□ -1.01
PNKP-218ENST00000625299 NDUFA1O15239 70 aa8.76□□□□□ -1.01
PNKP-218ENST00000625299 SMAGPQ0VAQ4 97 aa8.76□□□□□ -1.01
PNKP-218ENST00000625299 SMKR1H3BMG3 65 aa8.75□□□□□ -1.01
PNKP-218ENST00000625299 C10orf25Q5T742 122 aa8.75□□□□□ -1.01
PNKP-218ENST00000625299 CSDC2Q9Y534 153 aaKnown RBP8.75□□□□□ -1.01
PNKP-218ENST00000625299 A8MWL6 223 aa8.74□□□□□ -1.01
PNKP-218ENST00000625299 VCYO14598 125 aa8.74□□□□□ -1.01
PNKP-218ENST00000625299 AMN1Q8IY45 258 aa8.74□□□□□ -1.01
PNKP-218ENST00000625299 C6orf48Q9UBA6 75 aa8.74□□□□□ -1.01
PNKP-218ENST00000625299 RAB4AP20338 218 aa8.73□□□□□ -1.01
PNKP-218ENST00000625299 UNQ6190/PRO20217Q6UXQ8 127 aa8.73□□□□□ -1.01
PNKP-218ENST00000625299 TMEM191AQ9H0A3 160 aa8.73□□□□□ -1.01
PNKP-218ENST00000625299 KRTAP7-1Q8IUC3 87 aa8.72□□□□□ -1.01
PNKP-218ENST00000625299 KIR2DL4Q99706 377 aa8.72□□□□□ -1.01
PNKP-218ENST00000625299 SMDT1Q9H4I9 107 aa8.72□□□□□ -1.01
PNKP-218ENST00000625299 CARHSP1Q9Y2V2 147 aaKnown RBP8.72□□□□□ -1.01
PNKP-218ENST00000625299 A0A1B0GUT8 65 aa8.71□□□□□ -1.02
PNKP-218ENST00000625299 F8WDY8 70 aa8.71□□□□□ -1.02
PNKP-218ENST00000625299 TLX1NBP0CAT3 122 aa8.71□□□□□ -1.02
PNKP-218ENST00000625299 TMEM241Q24JQ0 296 aa8.71□□□□□ -1.02
PNKP-218ENST00000625299 RGS21Q2M5E4 152 aa8.71□□□□□ -1.02
PNKP-218ENST00000625299 TMEM18Q96B42 140 aa8.71□□□□□ -1.02
PNKP-218ENST00000625299 HIGD1CA8MV81 97 aa8.7□□□□□ -1.02
PNKP-218ENST00000625299 SUMO2P61956 95 aaKnown RBP8.7□□□□□ -1.02
PNKP-218ENST00000625299 FAM231DQ6ZW35 169 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms