RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 MED9Q9NWA0 146 aa10.62□□□□□ -0.71
CLK3-227ENST00000570296 IGLV4-69A0A075B6H9 119 aa10.61□□□□□ -0.71
CLK3-227ENST00000570296 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.61□□□□□ -0.71
CLK3-227ENST00000570296 LTAP01374 205 aa10.61□□□□□ -0.71
CLK3-227ENST00000570296 MGPP08493 103 aa10.61□□□□□ -0.71
CLK3-227ENST00000570296 NUP35Q8NFH5 326 aa10.61□□□□□ -0.71
CLK3-227ENST00000570296 C11orf52Q96A22 123 aa10.61□□□□□ -0.71
CLK3-227ENST00000570296 FAM210AQ96ND0 272 aa10.61□□□□□ -0.71
CLK3-227ENST00000570296 CRYGAP11844 174 aa10.6□□□□□ -0.71
CLK3-227ENST00000570296 RPL18AQ02543 176 aaKnown RBP10.6□□□□□ -0.71
CLK3-227ENST00000570296 RASL11AQ6T310 242 aa10.6□□□□□ -0.71
CLK3-227ENST00000570296 CCL25O15444 150 aa10.59□□□□□ -0.71
CLK3-227ENST00000570296 RPL35P42766 123 aaKnown RBP10.59□□□□□ -0.71
CLK3-227ENST00000570296 SSTP61278 116 aa10.59□□□□□ -0.71
CLK3-227ENST00000570296 IFITM2Q01629 132 aa10.59□□□□□ -0.71
CLK3-227ENST00000570296 PEA15Q15121 130 aa10.59□□□□□ -0.71
CLK3-227ENST00000570296 OR5A1Q8NGJ0 315 aa10.59□□□□□ -0.71
CLK3-227ENST00000570296 TMEM250H0YL14 139 aa10.58□□□□□ -0.72
CLK3-227ENST00000570296 RNASEKQ6P5S7 137 aaKnown RBP10.58□□□□□ -0.72
CLK3-227ENST00000570296 BAGE2Q86Y30 109 aa10.58□□□□□ -0.72
CLK3-227ENST00000570296 NIT2Q9NQR4 276 aa10.58□□□□□ -0.72
CLK3-227ENST00000570296 H7C423 109 aa10.57□□□□□ -0.72
CLK3-227ENST00000570296 GNG4P50150 75 aa10.57□□□□□ -0.72
CLK3-227ENST00000570296 CEBPGP53567 150 aa10.57□□□□□ -0.72
CLK3-227ENST00000570296 CLLU1Q5K131 121 aa10.57□□□□□ -0.72
CLK3-227ENST00000570296 RETNLBQ9BQ08 111 aa10.57□□□□□ -0.72
CLK3-227ENST00000570296 LINC00959A0A1B0GUT2 108 aa10.56□□□□□ -0.72
CLK3-227ENST00000570296 CAMK2N2Q96S95 79 aa10.56□□□□□ -0.72
CLK3-227ENST00000570296 SMDT1Q9H4I9 107 aa10.56□□□□□ -0.72
CLK3-227ENST00000570296 IGLV7-46A0A075B6I9 117 aa10.55□□□□□ -0.72
CLK3-227ENST00000570296 CENPWQ5EE01 88 aa10.55□□□□□ -0.72
CLK3-227ENST00000570296 CD164L2Q6UWJ8 174 aa10.55□□□□□ -0.72
CLK3-227ENST00000570296 BIN3Q9NQY0 253 aa10.55□□□□□ -0.72
CLK3-227ENST00000570296 SMIM12Q96EX1 92 aa10.54□□□□□ -0.72
CLK3-227ENST00000570296 RAB19A4D1S5 217 aa10.53□□□□□ -0.72
CLK3-227ENST00000570296 SRP19P09132 144 aaKnown RBP10.53□□□□□ -0.72
CLK3-227ENST00000570296 ZNF25P17030 456 aaPredicted RBP10.53□□□□□ -0.72
CLK3-227ENST00000570296 C2orf48Q96LS8 159 aa10.53□□□□□ -0.72
CLK3-227ENST00000570296 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.52□□□□□ -0.73
CLK3-227ENST00000570296 IGKV2-29A2NJV5 120 aaPredicted RBP10.52□□□□□ -0.73
CLK3-227ENST00000570296 NTF3P20783 257 aa10.52□□□□□ -0.73
CLK3-227ENST00000570296 RNF151Q2KHN1 245 aa10.52□□□□□ -0.73
CLK3-227ENST00000570296 TYMSOSQ8TAI1 123 aa10.52□□□□□ -0.73
CLK3-227ENST00000570296 A0A087X002 238 aa10.51□□□□□ -0.73
CLK3-227ENST00000570296 FAM168BA1KXE4 195 aa10.51□□□□□ -0.73
CLK3-227ENST00000570296 ZNF727A8MUV8 499 aa10.51□□□□□ -0.73
CLK3-227ENST00000570296 NCR2O95944 276 aa10.51□□□□□ -0.73
CLK3-227ENST00000570296 SS18Q15532 418 aa10.51□□□□□ -0.73
CLK3-227ENST00000570296 SMIM7Q9BQ49 75 aa10.51□□□□□ -0.73
CLK3-227ENST00000570296 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.5□□□□□ -0.73
CLK3-227ENST00000570296 ZNF861PO60384 105 aa10.5□□□□□ -0.73
CLK3-227ENST00000570296 ESDP10768 282 aa10.5□□□□□ -0.73
CLK3-227ENST00000570296 MALP21145 153 aa10.5□□□□□ -0.73
CLK3-227ENST00000570296 FAM74A3Q4VXF1 159 aa10.5□□□□□ -0.73
CLK3-227ENST00000570296 OPRPNQ99935 248 aaPredicted RBP10.5□□□□□ -0.73
CLK3-227ENST00000570296 C19orf71A6NCJ1 209 aa10.49□□□□□ -0.73
CLK3-227ENST00000570296 UBE2BP63146 152 aa10.49□□□□□ -0.73
CLK3-227ENST00000570296 FAM19A5Q7Z5A7 132 aaPredicted RBP10.49□□□□□ -0.73
CLK3-227ENST00000570296 TMEM101Q96IK0 257 aa10.49□□□□□ -0.73
CLK3-227ENST00000570296 BTF3L4Q96K17 158 aa10.49□□□□□ -0.73
CLK3-227ENST00000570296 TRBV20OR9-2A0A075B6H5 130 aa10.48□□□□□ -0.73
CLK3-227ENST00000570296 APCSP02743 223 aa10.48□□□□□ -0.73
CLK3-227ENST00000570296 TMEM241Q24JQ0 296 aa10.47□□□□□ -0.73
CLK3-227ENST00000570296 ASB16-AS1Q495Z4 193 aa10.47□□□□□ -0.73
CLK3-227ENST00000570296 UQCC3Q6UW78 93 aa10.47□□□□□ -0.73
CLK3-227ENST00000570296 LINC00173Q6ZV60 143 aa10.47□□□□□ -0.73
CLK3-227ENST00000570296 OCC1Q8TAD7 63 aa10.47□□□□□ -0.73
CLK3-227ENST00000570296 C9JQL5 133 aa10.46□□□□□ -0.73
CLK3-227ENST00000570296 COX7A2LO14548 114 aa10.46□□□□□ -0.73
CLK3-227ENST00000570296 XKRY2A2RUG3 117 aa10.45□□□□□ -0.74
CLK3-227ENST00000570296 RPS20P60866 119 aaKnown RBP10.45□□□□□ -0.74
CLK3-227ENST00000570296 COMMD7Q86VX2 200 aa10.45□□□□□ -0.74
CLK3-227ENST00000570296 IMMP2LQ96T52 175 aa10.45□□□□□ -0.74
CLK3-227ENST00000570296 TPPP3Q9BW30 176 aa10.45□□□□□ -0.74
CLK3-227ENST00000570296 NAT8Q9UHE5 227 aa10.45□□□□□ -0.74
CLK3-227ENST00000570296 M0QXV9 152 aa10.44□□□□□ -0.74
CLK3-227ENST00000570296 TRGC1P0CF51 173 aa10.44□□□□□ -0.74
CLK3-227ENST00000570296 IGLC6P0CF74 106 aa10.44□□□□□ -0.74
CLK3-227ENST00000570296 OR2D3Q8NGH3 330 aa10.44□□□□□ -0.74
CLK3-227ENST00000570296 KRTAP4-1Q9BYQ7 146 aa10.44□□□□□ -0.74
CLK3-227ENST00000570296 LINC00862A6NCI5 91 aa10.43□□□□□ -0.74
CLK3-227ENST00000570296 K7EN84 100 aa10.43□□□□□ -0.74
CLK3-227ENST00000570296 CFC1BP0CG36 223 aa10.43□□□□□ -0.74
CLK3-227ENST00000570296 LINC01551Q86U37 167 aa10.43□□□□□ -0.74
CLK3-227ENST00000570296 PPDPFQ9H3Y8 114 aa10.43□□□□□ -0.74
CLK3-227ENST00000570296 MRPL35Q9NZE8 188 aaKnown RBP10.43□□□□□ -0.74
CLK3-227ENST00000570296 ADIRFQ15847 76 aa10.42□□□□□ -0.74
CLK3-227ENST00000570296 KRTAP7-1Q8IUC3 87 aa10.42□□□□□ -0.74
CLK3-227ENST00000570296 NUDT10Q8NFP7 164 aa10.42□□□□□ -0.74
CLK3-227ENST00000570296 NUDT11Q96G61 164 aa10.42□□□□□ -0.74
CLK3-227ENST00000570296 GATCO43716 136 aaKnown RBP10.41□□□□□ -0.74
CLK3-227ENST00000570296 TLX1NBP0CAT3 122 aa10.41□□□□□ -0.74
CLK3-227ENST00000570296 CTAG1AP78358 180 aa10.41□□□□□ -0.74
CLK3-227ENST00000570296 FAM231DQ6ZW35 169 aa10.41□□□□□ -0.74
CLK3-227ENST00000570296 LINC00304Q8N9R0 145 aa10.41□□□□□ -0.74
CLK3-227ENST00000570296 RNASE7Q9H1E1 156 aaKnown RBP10.41□□□□□ -0.74
CLK3-227ENST00000570296 CDC42SE2Q9NRR3 84 aa10.41□□□□□ -0.74
CLK3-227ENST00000570296 C1orf196B1AJZ1 125 aa10.4□□□□□ -0.74
CLK3-227ENST00000570296 RPL23P62829 140 aaKnown RBP10.4□□□□□ -0.74
CLK3-227ENST00000570296 SPAG11BQ08648 103 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms