RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 EYSQ5T1H1 3165 aa12.03□□□□□ -0.48
CUX1-213ENST00000549414 FAM110AQ9BQ89 295 aa12.03□□□□□ -0.48
CUX1-213ENST00000549414 EDA2RQ9HAV5 297 aa12.03□□□□□ -0.48
CUX1-213ENST00000549414 CCL18P55774 89 aa12.02□□□□□ -0.48
CUX1-213ENST00000549414 C1orf43Q9BWL3 253 aa12.02□□□□□ -0.48
CUX1-213ENST00000549414 CRYGDP07320 174 aa12.02□□□□□ -0.49
CUX1-213ENST00000549414 SND1-IT1Q9HBX3 110 aa12.02□□□□□ -0.49
CUX1-213ENST00000549414 TRAV13-2A0A0B4J235 113 aa12.01□□□□□ -0.49
CUX1-213ENST00000549414 A8MZ25 164 aa12.01□□□□□ -0.49
CUX1-213ENST00000549414 ZNF22P17026 224 aaPredicted RBP12.01□□□□□ -0.49
CUX1-213ENST00000549414 TRBV27A0A0K0K1C4 114 aa12□□□□□ -0.49
CUX1-213ENST00000549414 COX7B2Q8TF08 81 aa12□□□□□ -0.49
CUX1-213ENST00000549414 TRBV10-1A0A0K0K1A3 114 aa12□□□□□ -0.49
CUX1-213ENST00000549414 COL6A3P12111 3177 aa12□□□□□ -0.49
CUX1-213ENST00000549414 RS1O15537 224 aa12□□□□□ -0.49
CUX1-213ENST00000549414 NKAPP1Q8N9T2 125 aa12□□□□□ -0.49
CUX1-213ENST00000549414 INSL3P51460 131 aa11.99□□□□□ -0.49
CUX1-213ENST00000549414 ICOSQ9Y6W8 199 aa11.99□□□□□ -0.49
CUX1-213ENST00000549414 IFITM1P13164 125 aa11.99□□□□□ -0.49
CUX1-213ENST00000549414 POLR2KP53803 58 aaKnown RBP11.99□□□□□ -0.49
CUX1-213ENST00000549414 NFE4Q86UQ8 179 aa11.99□□□□□ -0.49
CUX1-213ENST00000549414 NDUFA11Q86Y39 141 aa11.99□□□□□ -0.49
CUX1-213ENST00000549414 CLEC2BQ92478 149 aa11.99□□□□□ -0.49
CUX1-213ENST00000549414 OVOL2Q9BRP0 275 aa11.99□□□□□ -0.49
CUX1-213ENST00000549414 AKAP13Q12802 2813 aa11.99□□□□□ -0.49
CUX1-213ENST00000549414 A0A096LNJ9 63 aa11.99□□□□□ -0.49
CUX1-213ENST00000549414 A0A0J9YXY3 114 aa11.99□□□□□ -0.49
CUX1-213ENST00000549414 TINCRA0A1B0GVN0 87 aa11.99□□□□□ -0.49
CUX1-213ENST00000549414 IGHV4-4A0A075B6R2 117 aa11.98□□□□□ -0.49
CUX1-213ENST00000549414 HERV-K104P63124 156 aa11.98□□□□□ -0.49
CUX1-213ENST00000549414 KLK12Q9UKR0 248 aa11.98□□□□□ -0.49
CUX1-213ENST00000549414 GHRHP01286 108 aa11.98□□□□□ -0.49
CUX1-213ENST00000549414 FAM222AQ5U5X8 452 aa11.98□□□□□ -0.49
CUX1-213ENST00000549414 MUC4Q99102 2169 aa11.98□□□□□ -0.49
CUX1-213ENST00000549414 MIR7-3HGQ8N6C7 128 aa11.98□□□□□ -0.49
CUX1-213ENST00000549414 ANKRD29Q8N6D5 301 aa11.98□□□□□ -0.49
CUX1-213ENST00000549414 TSHBP01222 138 aa11.97□□□□□ -0.49
CUX1-213ENST00000549414 LINC01620Q4KN68 170 aa11.97□□□□□ -0.49
CUX1-213ENST00000549414 C9orf85Q96MD7 179 aa11.97□□□□□ -0.49
CUX1-213ENST00000549414 PRO0255Q9UI72 69 aa11.97□□□□□ -0.49
CUX1-213ENST00000549414 COX7A2LO14548 114 aa11.97□□□□□ -0.49
CUX1-213ENST00000549414 CRIP2P52943 208 aaPredicted RBP11.97□□□□□ -0.49
CUX1-213ENST00000549414 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.97□□□□□ -0.49
CUX1-213ENST00000549414 TM2D2Q9BX73 214 aa11.96□□□□□ -0.49
CUX1-213ENST00000549414 BAALC-AS2P0C853 105 aa11.96□□□□□ -0.5
CUX1-213ENST00000549414 OXLD1Q5BKU9 147 aa11.96□□□□□ -0.5
CUX1-213ENST00000549414 INAFM2P0DMQ5 153 aa11.95□□□□□ -0.5
CUX1-213ENST00000549414 FRYLO94915 3013 aa11.95□□□□□ -0.5
CUX1-213ENST00000549414 TRBV6-5A0A0K0K1A5 114 aa11.95□□□□□ -0.5
CUX1-213ENST00000549414 ODF3L2Q3SX64 289 aa11.95□□□□□ -0.5
CUX1-213ENST00000549414 RMI2Q96E14 147 aa11.95□□□□□ -0.5
CUX1-213ENST00000549414 LOC100131303A0A0U1RQF7 123 aa11.94□□□□□ -0.5
CUX1-213ENST00000549414 FRYQ5TBA9 3013 aa11.94□□□□□ -0.5
CUX1-213ENST00000549414 TRAV26-1A0A087WT03 109 aa11.94□□□□□ -0.5
CUX1-213ENST00000549414 SOCS3O14543 225 aa11.94□□□□□ -0.5
CUX1-213ENST00000549414 TEN1Q86WV5 123 aa11.94□□□□□ -0.5
CUX1-213ENST00000549414 NBEAQ8NFP9 2946 aa11.94□□□□□ -0.5
CUX1-213ENST00000549414 FLNAP21333 2647 aaKnown RBP11.94□□□□□ -0.5
CUX1-213ENST00000549414 HILS1P60008 231 aa11.94□□□□□ -0.5
CUX1-213ENST00000549414 ITPR3Q14573 2671 aa11.93□□□□□ -0.5
CUX1-213ENST00000549414 TMEM223A0PJW6 202 aa11.93□□□□□ -0.5
CUX1-213ENST00000549414 TCL1BO95988 128 aa11.93□□□□□ -0.5
CUX1-213ENST00000549414 UBE2BP63146 152 aa11.92□□□□□ -0.5
CUX1-213ENST00000549414 C15orf53Q8NAA6 179 aa11.92□□□□□ -0.5
CUX1-213ENST00000549414 COX8CQ7Z4L0 72 aa11.92□□□□□ -0.5
CUX1-213ENST00000549414 CAMK2N2Q96S95 79 aa11.92□□□□□ -0.5
CUX1-213ENST00000549414 F8WEM9 126 aa11.91□□□□□ -0.5
CUX1-213ENST00000549414 C11orf45Q8TAV5 145 aa11.91□□□□□ -0.5
CUX1-213ENST00000549414 SHISA2Q6UWI4 295 aa11.91□□□□□ -0.5
CUX1-213ENST00000549414 MIAQ16674 131 aa11.9□□□□□ -0.5
CUX1-213ENST00000549414 LINC00269Q8N2A0 174 aa11.9□□□□□ -0.5
CUX1-213ENST00000549414 FREM2Q5SZK8 3169 aa11.89□□□□□ -0.51
CUX1-213ENST00000549414 BOD1L1Q8NFC6 3051 aa11.89□□□□□ -0.51
CUX1-213ENST00000549414 FOXI1Q12951 378 aa11.89□□□□□ -0.51
CUX1-213ENST00000549414 TMEM126AQ9H061 195 aa11.89□□□□□ -0.51
CUX1-213ENST00000549414 COL27A1Q8IZC6 1860 aaPredicted RBP11.89□□□□□ -0.51
CUX1-213ENST00000549414 RPL18AQ02543 176 aaKnown RBP11.88□□□□□ -0.51
CUX1-213ENST00000549414 SPAG11BQ08648 103 aa11.88□□□□□ -0.51
CUX1-213ENST00000549414 IGIPA6NJ69 53 aa11.88□□□□□ -0.51
CUX1-213ENST00000549414 PIK3CD-AS1Q5SR53 167 aa11.87□□□□□ -0.51
CUX1-213ENST00000549414 NDUFA7O95182 113 aa11.87□□□□□ -0.51
CUX1-213ENST00000549414 HAMPP81172 84 aa11.87□□□□□ -0.51
CUX1-213ENST00000549414 LECT2O14960 151 aa11.86□□□□□ -0.51
CUX1-213ENST00000549414 NCR3O14931 201 aa11.86□□□□□ -0.51
CUX1-213ENST00000549414 RPL32P62910 135 aaKnown RBP11.86□□□□□ -0.51
CUX1-213ENST00000549414 REV3LO60673 3130 aa11.85□□□□□ -0.51
CUX1-213ENST00000549414 G3V4G9 280 aa11.85□□□□□ -0.51
CUX1-213ENST00000549414 TRBV6-8A0A0A6YYG3 113 aa11.85□□□□□ -0.51
CUX1-213ENST00000549414 CRYBA4P53673 196 aa11.84□□□□□ -0.51
CUX1-213ENST00000549414 IGLV2-18A0A075B6J9 118 aa11.84□□□□□ -0.51
CUX1-213ENST00000549414 UBE2D4Q9Y2X8 147 aa11.84□□□□□ -0.51
CUX1-213ENST00000549414 PYGO1Q9Y3Y4 419 aa11.84□□□□□ -0.51
CUX1-213ENST00000549414 DEFB131BA0A096LNP1 70 aa11.84□□□□□ -0.51
CUX1-213ENST00000549414 TRBV10-2A0A0K0K1G8 114 aa11.82□□□□□ -0.52
CUX1-213ENST00000549414 DEFB105AQ8NG35 78 aa11.82□□□□□ -0.52
CUX1-213ENST00000549414 ORMDL1Q9P0S3 153 aa11.82□□□□□ -0.52
CUX1-213ENST00000549414 TRBV6-4A0A1B0GX49 114 aa11.82□□□□□ -0.52
CUX1-213ENST00000549414 ZNF580Q9UK33 172 aa11.82□□□□□ -0.52
CUX1-213ENST00000549414 REG3AQ06141 175 aa11.82□□□□□ -0.52
CUX1-213ENST00000549414 HIGD2BQ4VC39 106 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms