RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 CAMK2N2Q96S95 79 aa10.32□□□□□ -0.76
VPS29-204ENST00000548259 IGLV1-50A0A075B6I6 118 aa10.31□□□□□ -0.76
VPS29-204ENST00000548259 TEX46H3BTG2 121 aa10.31□□□□□ -0.76
VPS29-204ENST00000548259 RPL39LQ96EH5 51 aaKnown RBP10.31□□□□□ -0.76
VPS29-204ENST00000548259 CNFNQ9BYD5 112 aa10.31□□□□□ -0.76
VPS29-204ENST00000548259 COX7A2LO14548 114 aa10.3□□□□□ -0.76
VPS29-204ENST00000548259 BCL2P10415 239 aa10.3□□□□□ -0.76
VPS29-204ENST00000548259 RPL18AQ02543 176 aaKnown RBP10.3□□□□□ -0.76
VPS29-204ENST00000548259 TRAV1-1A0A0B4J248 108 aa10.29□□□□□ -0.76
VPS29-204ENST00000548259 PDE6DO43924 150 aa10.29□□□□□ -0.76
VPS29-204ENST00000548259 IGLV7-43P04211 117 aa10.29□□□□□ -0.76
VPS29-204ENST00000548259 NUP35Q8NFH5 326 aa10.29□□□□□ -0.76
VPS29-204ENST00000548259 RAB19A4D1S5 217 aa10.28□□□□□ -0.76
VPS29-204ENST00000548259 C1orf196B1AJZ1 125 aa10.28□□□□□ -0.76
VPS29-204ENST00000548259 UBE2D1P51668 147 aa10.28□□□□□ -0.76
VPS29-204ENST00000548259 SMAGPQ0VAQ4 97 aa10.28□□□□□ -0.76
VPS29-204ENST00000548259 C2orf48Q96LS8 159 aa10.28□□□□□ -0.76
VPS29-204ENST00000548259 CDC42SE2Q9NRR3 84 aa10.28□□□□□ -0.76
VPS29-204ENST00000548259 A0A087WZ39 114 aa10.27□□□□□ -0.77
VPS29-204ENST00000548259 H0Y9J4 135 aa10.27□□□□□ -0.77
VPS29-204ENST00000548259 RPL13AP40429 203 aaKnown RBP10.27□□□□□ -0.77
VPS29-204ENST00000548259 ZNF345Q14585 488 aa10.27□□□□□ -0.77
VPS29-204ENST00000548259 PHF5AQ7RTV0 110 aaKnown RBP10.27□□□□□ -0.77
VPS29-204ENST00000548259 MRPL52Q86TS9 123 aaKnown RBP10.27□□□□□ -0.77
VPS29-204ENST00000548259 TRBV6-5A0A0K0K1A5 114 aa10.26□□□□□ -0.77
VPS29-204ENST00000548259 KANTRA0A1W2PQU2 76 aa10.26□□□□□ -0.77
VPS29-204ENST00000548259 ESDP10768 282 aa10.26□□□□□ -0.77
VPS29-204ENST00000548259 NUDT10Q8NFP7 164 aa10.26□□□□□ -0.77
VPS29-204ENST00000548259 NUDT11Q96G61 164 aa10.26□□□□□ -0.77
VPS29-204ENST00000548259 RPP21Q9H633 154 aaKnown RBP10.26□□□□□ -0.77
VPS29-204ENST00000548259 MED9Q9NWA0 146 aa10.26□□□□□ -0.77
VPS29-204ENST00000548259 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.25□□□□□ -0.77
VPS29-204ENST00000548259 BCL2L11O43521 198 aa10.25□□□□□ -0.77
VPS29-204ENST00000548259 MEF2BQ02080 365 aaPredicted RBP10.25□□□□□ -0.77
VPS29-204ENST00000548259 ST20Q9HBF5 79 aa10.25□□□□□ -0.77
VPS29-204ENST00000548259 MUC2Q02817 5179 aa10.25□□□□□ -0.77
VPS29-204ENST00000548259 C7orf77A4D0Y5 90 aa10.24□□□□□ -0.77
VPS29-204ENST00000548259 G3V3Q6 166 aa10.24□□□□□ -0.77
VPS29-204ENST00000548259 RNF151Q2KHN1 245 aa10.24□□□□□ -0.77
VPS29-204ENST00000548259 TMEM242Q9NWH2 141 aa10.24□□□□□ -0.77
VPS29-204ENST00000548259 TSHBP01222 138 aa10.23□□□□□ -0.77
VPS29-204ENST00000548259 IMMP2LQ96T52 175 aa10.23□□□□□ -0.77
VPS29-204ENST00000548259 BORCS7Q96B45 105 aa10.22□□□□□ -0.77
VPS29-204ENST00000548259 TRBV20OR9-2A0A075B6H5 130 aa10.21□□□□□ -0.77
VPS29-204ENST00000548259 SPAG11BQ08648 103 aa10.21□□□□□ -0.77
VPS29-204ENST00000548259 F8WDY8 70 aa10.2□□□□□ -0.78
VPS29-204ENST00000548259 FCER1GP30273 86 aa10.2□□□□□ -0.78
VPS29-204ENST00000548259 FOXA3P55318 350 aaPredicted RBP10.2□□□□□ -0.78
VPS29-204ENST00000548259 OPRPNQ99935 248 aaPredicted RBP10.2□□□□□ -0.78
VPS29-204ENST00000548259 RNASE7Q9H1E1 156 aaKnown RBP10.2□□□□□ -0.78
VPS29-204ENST00000548259 CSDC2Q9Y534 153 aaKnown RBP10.2□□□□□ -0.78
VPS29-204ENST00000548259 TRAV13-1A0A0B4J241 112 aa10.19□□□□□ -0.78
VPS29-204ENST00000548259 C5orf38Q86SI9 138 aa10.19□□□□□ -0.78
VPS29-204ENST00000548259 OR10D4PQ8NGN7 298 aa10.19□□□□□ -0.78
VPS29-204ENST00000548259 TRBV27A0A0K0K1C4 114 aa10.18□□□□□ -0.78
VPS29-204ENST00000548259 HMSDA8MTL9 139 aa10.18□□□□□ -0.78
VPS29-204ENST00000548259 UBE2BP63146 152 aa10.18□□□□□ -0.78
VPS29-204ENST00000548259 MRPL35Q9NZE8 188 aaKnown RBP10.18□□□□□ -0.78
VPS29-204ENST00000548259 KRTAP9-6A0A140TA67 174 aa10.17□□□□□ -0.78
VPS29-204ENST00000548259 A8MWL6 223 aa10.17□□□□□ -0.78
VPS29-204ENST00000548259 SMLR1H3BR10 107 aa10.17□□□□□ -0.78
VPS29-204ENST00000548259 TAGLN2P37802 199 aaKnown RBP10.17□□□□□ -0.78
VPS29-204ENST00000548259 CARHSP1Q9Y2V2 147 aaKnown RBP10.17□□□□□ -0.78
VPS29-204ENST00000548259 VCYO14598 125 aa10.16□□□□□ -0.78
VPS29-204ENST00000548259 NDUFA1O15239 70 aa10.16□□□□□ -0.78
VPS29-204ENST00000548259 POLR2KP53803 58 aaKnown RBP10.16□□□□□ -0.78
VPS29-204ENST00000548259 TMEM241Q24JQ0 296 aa10.16□□□□□ -0.78
VPS29-204ENST00000548259 FAM19A5Q7Z5A7 132 aaPredicted RBP10.16□□□□□ -0.78
VPS29-204ENST00000548259 TMEM18Q96B42 140 aa10.16□□□□□ -0.78
VPS29-204ENST00000548259 GATCO43716 136 aaKnown RBP10.15□□□□□ -0.78
VPS29-204ENST00000548259 PPP1R17O96001 155 aa10.15□□□□□ -0.78
VPS29-204ENST00000548259 KRTAP1-4P0C5Y4 121 aa10.15□□□□□ -0.78
VPS29-204ENST00000548259 KIR2DL4Q99706 377 aa10.15□□□□□ -0.78
VPS29-204ENST00000548259 OCC1Q8TAD7 63 aa10.14□□□□□ -0.79
VPS29-204ENST00000548259 ORAOV1Q8WV07 137 aa10.14□□□□□ -0.79
VPS29-204ENST00000548259 K7EN84 100 aa10.13□□□□□ -0.79
VPS29-204ENST00000548259 TLX1NBP0CAT3 122 aa10.13□□□□□ -0.79
VPS29-204ENST00000548259 RNASE13Q5GAN3 156 aaKnown RBP10.13□□□□□ -0.79
VPS29-204ENST00000548259 TMEM191AQ9H0A3 160 aa10.13□□□□□ -0.79
VPS29-204ENST00000548259 UBE2D4Q9Y2X8 147 aa10.13□□□□□ -0.79
VPS29-204ENST00000548259 FAM168BA1KXE4 195 aa10.12□□□□□ -0.79
VPS29-204ENST00000548259 M0QXV9 152 aa10.12□□□□□ -0.79
VPS29-204ENST00000548259 A0A1B0GUT8 65 aa10.11□□□□□ -0.79
VPS29-204ENST00000548259 GAGE2EQ4V326 116 aa10.11□□□□□ -0.79
VPS29-204ENST00000548259 CT83Q5H943 113 aa10.11□□□□□ -0.79
VPS29-204ENST00000548259 TIMM21Q9BVV7 248 aa10.11□□□□□ -0.79
VPS29-204ENST00000548259 GAGE2DQ9UEU5 116 aa10.11□□□□□ -0.79
VPS29-204ENST00000548259 TSPAN13O95857 204 aa10.1□□□□□ -0.79
VPS29-204ENST00000548259 LCE2AQ5TA79 106 aaPredicted RBP10.1□□□□□ -0.79
VPS29-204ENST00000548259 Q6ZUT4 128 aa10.1□□□□□ -0.79
VPS29-204ENST00000548259 FAM231DQ6ZW35 169 aa10.1□□□□□ -0.79
VPS29-204ENST00000548259 PPP1R2P9O14990 202 aa10.09□□□□□ -0.79
VPS29-204ENST00000548259 RAB4AP20338 218 aa10.09□□□□□ -0.79
VPS29-204ENST00000548259 SUMO2P61956 95 aaKnown RBP10.09□□□□□ -0.79
VPS29-204ENST00000548259 RGS21Q2M5E4 152 aa10.09□□□□□ -0.79
VPS29-204ENST00000548259 KRTAP11-1Q8IUC1 163 aa10.09□□□□□ -0.79
VPS29-204ENST00000548259 SMDT1Q9H4I9 107 aa10.09□□□□□ -0.79
VPS29-204ENST00000548259 TCAPO15273 167 aa10.08□□□□□ -0.8
VPS29-204ENST00000548259 ZNF861PO60384 105 aa10.07□□□□□ -0.8
VPS29-204ENST00000548259 UNQ6190/PRO20217Q6UXQ8 127 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 314.8 ms