RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 SAMD5Q5TGI4 173 aa7.89□□□□□ -1.15
CUX1-212ENST00000547394 TRBV7-3A0A075B6L6 115 aa7.89□□□□□ -1.15
CUX1-212ENST00000547394 A0A096LPF7 62 aa7.89□□□□□ -1.15
CUX1-212ENST00000547394 K7EQD1 137 aa7.89□□□□□ -1.15
CUX1-212ENST00000547394 MTURNQ8N3F0 131 aa7.89□□□□□ -1.15
CUX1-212ENST00000547394 CLUHP3Q96NS8 147 aa7.89□□□□□ -1.15
CUX1-212ENST00000547394 HERVK_113P61574 105 aa7.89□□□□□ -1.15
CUX1-212ENST00000547394 DEFB135Q30KP9 77 aa7.89□□□□□ -1.15
CUX1-212ENST00000547394 DGAT2L7PQ6IED9 249 aa7.89□□□□□ -1.15
CUX1-212ENST00000547394 TRAV13-1A0A0B4J241 112 aa7.88□□□□□ -1.15
CUX1-212ENST00000547394 LGALS3P17931 250 aaKnown RBP7.88□□□□□ -1.15
CUX1-212ENST00000547394 RPL24P83731 157 aaKnown RBP7.88□□□□□ -1.15
CUX1-212ENST00000547394 TRGV4A0A0C4DH28 118 aa7.88□□□□□ -1.15
CUX1-212ENST00000547394 TMEM223A0PJW6 202 aa7.88□□□□□ -1.15
CUX1-212ENST00000547394 APOMO95445 188 aa7.88□□□□□ -1.15
CUX1-212ENST00000547394 NPC2P61916 151 aa7.88□□□□□ -1.15
CUX1-212ENST00000547394 OR5A1Q8NGJ0 315 aa7.88□□□□□ -1.15
CUX1-212ENST00000547394 TM2D2Q9BX73 214 aa7.88□□□□□ -1.15
CUX1-212ENST00000547394 C12orf74Q32Q52 190 aa7.87□□□□□ -1.15
CUX1-212ENST00000547394 AMELXQ99217 191 aa7.87□□□□□ -1.15
CUX1-212ENST00000547394 TENM3Q9P273 2699 aa7.87□□□□□ -1.15
CUX1-212ENST00000547394 TRAV4A0A0B4J268 109 aa7.87□□□□□ -1.15
CUX1-212ENST00000547394 A0A0J9YY99 117 aa7.87□□□□□ -1.15
CUX1-212ENST00000547394 RPL36AP83881 106 aaKnown RBP7.87□□□□□ -1.15
CUX1-212ENST00000547394 COX6A2Q02221 97 aa7.87□□□□□ -1.15
CUX1-212ENST00000547394 RPL36ALQ969Q0 106 aaKnown RBP7.87□□□□□ -1.15
CUX1-212ENST00000547394 C16orf74Q96GX8 76 aa7.87□□□□□ -1.15
CUX1-212ENST00000547394 NFE4Q86UQ8 179 aa7.86□□□□□ -1.15
CUX1-212ENST00000547394 EDA2RQ9HAV5 297 aa7.86□□□□□ -1.15
CUX1-212ENST00000547394 NBEAL1Q6ZS30 2694 aa7.86□□□□□ -1.15
CUX1-212ENST00000547394 TMEM238C9JI98 176 aa7.86□□□□□ -1.15
CUX1-212ENST00000547394 A0A0U1RRA0 63 aa7.85□□□□□ -1.15
CUX1-212ENST00000547394 TEX48A0A1B0GUV7 120 aa7.85□□□□□ -1.15
CUX1-212ENST00000547394 IGHV3-30-3P0DP02 117 aa7.85□□□□□ -1.15
CUX1-212ENST00000547394 DAZ2Q13117 558 aaKnown RBP7.85□□□□□ -1.15
CUX1-212ENST00000547394 PAPPA-AS1Q5QFB9 102 aa7.85□□□□□ -1.15
CUX1-212ENST00000547394 PIK3CD-AS1Q5SR53 167 aa7.85□□□□□ -1.15
CUX1-212ENST00000547394 CDKN2A-AS1Q9UH64 79 aa7.85□□□□□ -1.15
CUX1-212ENST00000547394 C10orf126Q8N4M7 172 aa7.85□□□□□ -1.15
CUX1-212ENST00000547394 ZNF625Q96I27 306 aaPredicted RBP7.85□□□□□ -1.15
CUX1-212ENST00000547394 C1QTNF4Q9BXJ3 329 aa7.85□□□□□ -1.15
CUX1-212ENST00000547394 GAGE6Q13070 117 aa7.85□□□□□ -1.15
CUX1-212ENST00000547394 DAND5Q8N907 189 aa7.85□□□□□ -1.15
CUX1-212ENST00000547394 PTH2Q96A98 100 aa7.85□□□□□ -1.15
CUX1-212ENST00000547394 UBE2D3P61077 147 aa7.84□□□□□ -1.15
CUX1-212ENST00000547394 UBE2D2P62837 147 aa7.84□□□□□ -1.15
CUX1-212ENST00000547394 TIMM21Q9BVV7 248 aa7.84□□□□□ -1.15
CUX1-212ENST00000547394 GEMIN7Q9H840 131 aaKnown RBP7.84□□□□□ -1.15
CUX1-212ENST00000547394 PYGO1Q9Y3Y4 419 aa7.84□□□□□ -1.15
CUX1-212ENST00000547394 LINC01549A6NIU2 74 aa7.84□□□□□ -1.15
CUX1-212ENST00000547394 IGLL5B9A064 214 aa7.84□□□□□ -1.15
CUX1-212ENST00000547394 H7C2G1 150 aa7.84□□□□□ -1.15
CUX1-212ENST00000547394 DNAJC30Q96LL9 226 aa7.84□□□□□ -1.15
CUX1-212ENST00000547394 CMC4P56277 68 aaPredicted RBP7.83□□□□□ -1.16
CUX1-212ENST00000547394 MRPS36P82909 103 aaKnown RBP7.83□□□□□ -1.16
CUX1-212ENST00000547394 FHL2Q14192 279 aa7.83□□□□□ -1.16
CUX1-212ENST00000547394 X6R8D5 127 aa7.83□□□□□ -1.16
CUX1-212ENST00000547394 LEPROTO15243 131 aa7.83□□□□□ -1.16
CUX1-212ENST00000547394 OXLD1Q5BKU9 147 aa7.83□□□□□ -1.16
CUX1-212ENST00000547394 SPANXA1Q9NS26 97 aa7.83□□□□□ -1.16
CUX1-212ENST00000547394 PGPEP1Q9NXJ5 209 aa7.83□□□□□ -1.16
CUX1-212ENST00000547394 CYSRT1A8MQ03 144 aa7.82□□□□□ -1.16
CUX1-212ENST00000547394 PRSS2P07478 247 aa7.82□□□□□ -1.16
CUX1-212ENST00000547394 UBE2D1P51668 147 aa7.82□□□□□ -1.16
CUX1-212ENST00000547394 CITED1Q99966 193 aa7.82□□□□□ -1.16
CUX1-212ENST00000547394 FAM110AQ9BQ89 295 aa7.82□□□□□ -1.16
CUX1-212ENST00000547394 WFDC2Q14508 124 aa7.81□□□□□ -1.16
CUX1-212ENST00000547394 C9orf66Q5T8R8 295 aa7.81□□□□□ -1.16
CUX1-212ENST00000547394 FAM222AQ5U5X8 452 aa7.81□□□□□ -1.16
CUX1-212ENST00000547394 H3BMG7 143 aa7.81□□□□□ -1.16
CUX1-212ENST00000547394 EIF4EBP3O60516 100 aaPredicted RBP7.81□□□□□ -1.16
CUX1-212ENST00000547394 IGHV3-30P01768 117 aa7.81□□□□□ -1.16
CUX1-212ENST00000547394 IGHV3-30-5P0DP03 117 aa7.81□□□□□ -1.16
CUX1-212ENST00000547394 ADAMTSL4-AS1Q5T5F5 129 aa7.81□□□□□ -1.16
CUX1-212ENST00000547394 MGAM2Q2M2H8 2515 aa7.81□□□□□ -1.16
CUX1-212ENST00000547394 UBE2L6O14933 153 aa7.81□□□□□ -1.16
CUX1-212ENST00000547394 HTN3P15516 51 aa7.81□□□□□ -1.16
CUX1-212ENST00000547394 LINC00242Q5T6M2 205 aa7.81□□□□□ -1.16
CUX1-212ENST00000547394 CLPSL2Q6UWE3 100 aa7.81□□□□□ -1.16
CUX1-212ENST00000547394 OVOL2Q9BRP0 275 aa7.81□□□□□ -1.16
CUX1-212ENST00000547394 IGLV4-60A0A075B6I1 120 aa7.8□□□□□ -1.16
CUX1-212ENST00000547394 A0A0J9YXY3 114 aa7.8□□□□□ -1.16
CUX1-212ENST00000547394 TAL2Q16559 108 aa7.8□□□□□ -1.16
CUX1-212ENST00000547394 SH2D6Q7Z4S9 175 aa7.8□□□□□ -1.16
CUX1-212ENST00000547394 CHCHD5Q9BSY4 110 aa7.8□□□□□ -1.16
CUX1-212ENST00000547394 GTSF1LQ9H1H1 148 aa7.8□□□□□ -1.16
CUX1-212ENST00000547394 NDUFA12Q9UI09 145 aa7.8□□□□□ -1.16
CUX1-212ENST00000547394 LOC107984156A0A0G2JMH3 177 aa7.8□□□□□ -1.16
CUX1-212ENST00000547394 TRBV10-1A0A0K0K1A3 114 aa7.8□□□□□ -1.16
CUX1-212ENST00000547394 GYPEP15421 78 aa7.8□□□□□ -1.16
CUX1-212ENST00000547394 DAZ4Q86SG3 579 aaKnown RBP7.8□□□□□ -1.16
CUX1-212ENST00000547394 MUSTN1Q8IVN3 82 aa7.8□□□□□ -1.16
CUX1-212ENST00000547394 ARL17AQ8IVW1 177 aa7.8□□□□□ -1.16
CUX1-212ENST00000547394 Q8N3U1 123 aa7.8□□□□□ -1.16
CUX1-212ENST00000547394 DAZ3Q9NR90 486 aaKnown RBP7.8□□□□□ -1.16
CUX1-212ENST00000547394 TINCRA0A1B0GVN0 87 aa7.79□□□□□ -1.16
CUX1-212ENST00000547394 A4D1N5 150 aa7.79□□□□□ -1.16
CUX1-212ENST00000547394 CIDEAO60543 219 aa7.79□□□□□ -1.16
CUX1-212ENST00000547394 VSIG2Q96IQ7 327 aa7.79□□□□□ -1.16
CUX1-212ENST00000547394 TMEM243Q9BU79 118 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms