RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TRAV8-3A0A0A6YYJ7 113 aa11.63□□□□□ -0.55
COL4A1-204ENST00000543140 DGAT2L7PQ6IED9 249 aa11.63□□□□□ -0.55
COL4A1-204ENST00000543140 LOC100131303A0A0U1RQF7 123 aa11.63□□□□□ -0.55
COL4A1-204ENST00000543140 LINC00694P0DN24 101 aa11.63□□□□□ -0.55
COL4A1-204ENST00000543140 TEP1Q99973 2627 aaKnown RBP11.63□□□□□ -0.55
COL4A1-204ENST00000543140 IGLL5B9A064 214 aa11.62□□□□□ -0.55
COL4A1-204ENST00000543140 CRYBA4P53673 196 aa11.62□□□□□ -0.55
COL4A1-204ENST00000543140 NTM-AS1Q6ZSK4 140 aa11.62□□□□□ -0.55
COL4A1-204ENST00000543140 TRBV10-1A0A0K0K1A3 114 aa11.62□□□□□ -0.55
COL4A1-204ENST00000543140 TIMM21Q9BVV7 248 aa11.62□□□□□ -0.55
COL4A1-204ENST00000543140 IGHV3-30-3P0DP02 117 aa11.61□□□□□ -0.55
COL4A1-204ENST00000543140 UBE2D3P61077 147 aa11.61□□□□□ -0.55
COL4A1-204ENST00000543140 UBE2D2P62837 147 aa11.61□□□□□ -0.55
COL4A1-204ENST00000543140 CRLF1O75462 422 aa11.61□□□□□ -0.55
COL4A1-204ENST00000543140 TRGV4A0A0C4DH28 118 aa11.6□□□□□ -0.55
COL4A1-204ENST00000543140 OVOL2Q9BRP0 275 aa11.6□□□□□ -0.55
COL4A1-204ENST00000543140 A8MZ25 164 aa11.6□□□□□ -0.55
COL4A1-204ENST00000543140 DAZ4Q86SG3 579 aaKnown RBP11.6□□□□□ -0.55
COL4A1-204ENST00000543140 OR5A1Q8NGJ0 315 aa11.6□□□□□ -0.55
COL4A1-204ENST00000543140 DAZ3Q9NR90 486 aaKnown RBP11.6□□□□□ -0.55
COL4A1-204ENST00000543140 TINCRA0A1B0GVN0 87 aa11.59□□□□□ -0.55
COL4A1-204ENST00000543140 SPINK8P0C7L1 97 aa11.59□□□□□ -0.55
COL4A1-204ENST00000543140 GEMIN7Q9H840 131 aaKnown RBP11.59□□□□□ -0.55
COL4A1-204ENST00000543140 A0A1B0GWB2 263 aa11.59□□□□□ -0.55
COL4A1-204ENST00000543140 APOMO95445 188 aa11.59□□□□□ -0.55
COL4A1-204ENST00000543140 DEFB130BP0DP73 79 aa11.59□□□□□ -0.55
COL4A1-204ENST00000543140 DEFB130AP0DP74 79 aa11.59□□□□□ -0.55
COL4A1-204ENST00000543140 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.59□□□□□ -0.55
COL4A1-204ENST00000543140 IGHV3-30P01768 117 aa11.58□□□□□ -0.56
COL4A1-204ENST00000543140 IGHV3-30-5P0DP03 117 aa11.58□□□□□ -0.56
COL4A1-204ENST00000543140 UBE2D1P51668 147 aa11.58□□□□□ -0.56
COL4A1-204ENST00000543140 C10orf126Q8N4M7 172 aa11.58□□□□□ -0.56
COL4A1-204ENST00000543140 TMEM238LA0A1B0GVL6 79 aa11.58□□□□□ -0.56
COL4A1-204ENST00000543140 A6NJY4 79 aa11.58□□□□□ -0.56
COL4A1-204ENST00000543140 FLNBO75369 2602 aaKnown RBP11.57□□□□□ -0.56
COL4A1-204ENST00000543140 SPANXB1Q9NS25 103 aaPredicted RBP11.57□□□□□ -0.56
COL4A1-204ENST00000543140 CDKN2A-AS1Q9UH64 79 aa11.57□□□□□ -0.56
COL4A1-204ENST00000543140 C9orf66Q5T8R8 295 aa11.57□□□□□ -0.56
COL4A1-204ENST00000543140 PGPEP1Q9NXJ5 209 aa11.57□□□□□ -0.56
COL4A1-204ENST00000543140 IGHV1-58A0A0C4DH39 117 aa11.56□□□□□ -0.56
COL4A1-204ENST00000543140 COX6A2Q02221 97 aa11.56□□□□□ -0.56
COL4A1-204ENST00000543140 FHL2Q14192 279 aa11.56□□□□□ -0.56
COL4A1-204ENST00000543140 SFTA2Q6UW10 78 aa11.56□□□□□ -0.56
COL4A1-204ENST00000543140 VSIG2Q96IQ7 327 aa11.56□□□□□ -0.56
COL4A1-204ENST00000543140 TRBV6-4A0A1B0GX49 114 aa11.55□□□□□ -0.56
COL4A1-204ENST00000543140 INSL3P51460 131 aa11.55□□□□□ -0.56
COL4A1-204ENST00000543140 F8P00451 2351 aa11.55□□□□□ -0.56
COL4A1-204ENST00000543140 TRAV13-1A0A0B4J241 112 aa11.55□□□□□ -0.56
COL4A1-204ENST00000543140 A0A0J9YXY3 114 aa11.55□□□□□ -0.56
COL4A1-204ENST00000543140 SBSPONQ8IVN8 264 aa11.54□□□□□ -0.56
COL4A1-204ENST00000543140 K7ERU9 68 aa11.54□□□□□ -0.56
COL4A1-204ENST00000543140 MTURNQ8N3F0 131 aa11.54□□□□□ -0.56
COL4A1-204ENST00000543140 UBE2L6O14933 153 aa11.53□□□□□ -0.56
COL4A1-204ENST00000543140 CITED1Q99966 193 aa11.53□□□□□ -0.56
COL4A1-204ENST00000543140 TMEM243Q9BU79 118 aa11.53□□□□□ -0.56
COL4A1-204ENST00000543140 NDUFA12Q9UI09 145 aa11.53□□□□□ -0.56
COL4A1-204ENST00000543140 LINC00242Q5T6M2 205 aa11.53□□□□□ -0.56
COL4A1-204ENST00000543140 X6R8D5 127 aa11.53□□□□□ -0.56
COL4A1-204ENST00000543140 CFC1BP0CG36 223 aa11.52□□□□□ -0.56
COL4A1-204ENST00000543140 CFC1P0CG37 223 aa11.52□□□□□ -0.56
COL4A1-204ENST00000543140 MUSTN1Q8IVN3 82 aa11.52□□□□□ -0.57
COL4A1-204ENST00000543140 CDC42SE2Q9NRR3 84 aa11.52□□□□□ -0.57
COL4A1-204ENST00000543140 TRRAPQ9Y4A5 3859 aa11.51□□□□□ -0.57
COL4A1-204ENST00000543140 H3BMG7 143 aa11.51□□□□□ -0.57
COL4A1-204ENST00000543140 DEFB4AO15263 64 aa11.51□□□□□ -0.57
COL4A1-204ENST00000543140 TIRAPP58753 221 aa11.51□□□□□ -0.57
COL4A1-204ENST00000543140 DEFB135Q30KP9 77 aa11.51□□□□□ -0.57
COL4A1-204ENST00000543140 GTSF1LQ9H1H1 148 aa11.51□□□□□ -0.57
COL4A1-204ENST00000543140 CSDC2Q9Y534 153 aaKnown RBP11.51□□□□□ -0.57
COL4A1-204ENST00000543140 A4D1N5 150 aa11.51□□□□□ -0.57
COL4A1-204ENST00000543140 TMEM238C9JI98 176 aa11.51□□□□□ -0.57
COL4A1-204ENST00000543140 CIDEAO60543 219 aa11.51□□□□□ -0.57
COL4A1-204ENST00000543140 TSPAN13O95857 204 aa11.51□□□□□ -0.57
COL4A1-204ENST00000543140 TMEM101Q96IK0 257 aa11.51□□□□□ -0.57
COL4A1-204ENST00000543140 PRSS2P07478 247 aa11.5□□□□□ -0.57
COL4A1-204ENST00000543140 GAGE6Q13070 117 aa11.5□□□□□ -0.57
COL4A1-204ENST00000543140 IGLV5-45A0A087WSX0 123 aa11.49□□□□□ -0.57
COL4A1-204ENST00000543140 LOC107984156A0A0G2JMH3 177 aa11.49□□□□□ -0.57
COL4A1-204ENST00000543140 HERVK_113P63121 156 aa11.49□□□□□ -0.57
COL4A1-204ENST00000543140 RPL24P83731 157 aaKnown RBP11.49□□□□□ -0.57
COL4A1-204ENST00000543140 ADAMTSL4-AS1Q5T5F5 129 aa11.49□□□□□ -0.57
COL4A1-204ENST00000543140 ARL17AQ8IVW1 177 aa11.49□□□□□ -0.57
COL4A1-204ENST00000543140 KIR2DL5BQ8NHK3 375 aa11.49□□□□□ -0.57
COL4A1-204ENST00000543140 LITAFQ99732 161 aa11.49□□□□□ -0.57
COL4A1-204ENST00000543140 G3V4G9 280 aa11.48□□□□□ -0.57
COL4A1-204ENST00000543140 NPC2P61916 151 aa11.48□□□□□ -0.57
COL4A1-204ENST00000543140 ZFAND6Q6FIF0 208 aa11.48□□□□□ -0.57
COL4A1-204ENST00000543140 IGKV3OR2-268A0A0C4DH90 116 aa11.47□□□□□ -0.57
COL4A1-204ENST00000543140 TEX48A0A1B0GUV7 120 aa11.47□□□□□ -0.57
COL4A1-204ENST00000543140 EIF4EBP3O60516 100 aaPredicted RBP11.47□□□□□ -0.57
COL4A1-204ENST00000543140 FAM222AQ5U5X8 452 aa11.47□□□□□ -0.57
COL4A1-204ENST00000543140 CHCHD5Q9BSY4 110 aa11.47□□□□□ -0.57
COL4A1-204ENST00000543140 TRBV6-8A0A0A6YYG3 113 aa11.46□□□□□ -0.57
COL4A1-204ENST00000543140 GYPEP15421 78 aa11.46□□□□□ -0.57
COL4A1-204ENST00000543140 LINC00612Q8N6U2 182 aa11.46□□□□□ -0.57
COL4A1-204ENST00000543140 PRO1854Q9UHT4 67 aa11.46□□□□□ -0.57
COL4A1-204ENST00000543140 SMIM9A6NGZ8 99 aa11.46□□□□□ -0.58
COL4A1-204ENST00000543140 H7C2G1 150 aa11.46□□□□□ -0.58
COL4A1-204ENST00000543140 SMAGPQ0VAQ4 97 aa11.46□□□□□ -0.58
COL4A1-204ENST00000543140 WFDC2Q14508 124 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms