RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 DEFB114Q30KQ6 69 aa11.9□□□□□ -0.5
VARS2-212ENST00000542001 TINCRA0A1B0GVN0 87 aa11.9□□□□□ -0.51
VARS2-212ENST00000542001 HERVK_113P63121 156 aa11.9□□□□□ -0.51
VARS2-212ENST00000542001 KLLNB2CW77 178 aa11.89□□□□□ -0.51
VARS2-212ENST00000542001 MED14OSP0DP75 135 aa11.89□□□□□ -0.51
VARS2-212ENST00000542001 SS18Q15532 418 aa11.89□□□□□ -0.51
VARS2-212ENST00000542001 DEFB135Q30KP9 77 aa11.89□□□□□ -0.51
VARS2-212ENST00000542001 SMIM20Q8N5G0 67 aa11.89□□□□□ -0.51
VARS2-212ENST00000542001 ZNF702PQ9H963 129 aa11.89□□□□□ -0.51
VARS2-212ENST00000542001 POLR2KP53803 58 aaKnown RBP11.88□□□□□ -0.51
VARS2-212ENST00000542001 NFE4Q86UQ8 179 aa11.88□□□□□ -0.51
VARS2-212ENST00000542001 SPANXA1Q9NS26 97 aa11.88□□□□□ -0.51
VARS2-212ENST00000542001 A0A0J9YXY3 114 aa11.88□□□□□ -0.51
VARS2-212ENST00000542001 HIST1H4AP62805 103 aaKnown RBP11.88□□□□□ -0.51
VARS2-212ENST00000542001 K7EQD1 137 aa11.87□□□□□ -0.51
VARS2-212ENST00000542001 FOXI1Q12951 378 aa11.87□□□□□ -0.51
VARS2-212ENST00000542001 VSIG2Q96IQ7 327 aa11.87□□□□□ -0.51
VARS2-212ENST00000542001 LOC100131303A0A0U1RQF7 123 aa11.86□□□□□ -0.51
VARS2-212ENST00000542001 LINC01620Q4KN68 170 aa11.86□□□□□ -0.51
VARS2-212ENST00000542001 DEFB121Q5J5C9 76 aa11.86□□□□□ -0.51
VARS2-212ENST00000542001 DPH3Q96FX2 82 aa11.86□□□□□ -0.51
VARS2-212ENST00000542001 SMR3AQ99954 134 aa11.86□□□□□ -0.51
VARS2-212ENST00000542001 CRIP2P52943 208 aaPredicted RBP11.86□□□□□ -0.51
VARS2-212ENST00000542001 ZNF843Q8N446 348 aa11.86□□□□□ -0.51
VARS2-212ENST00000542001 C15orf53Q8NAA6 179 aa11.86□□□□□ -0.51
VARS2-212ENST00000542001 NBEAL2Q6ZNJ1 2754 aa11.85□□□□□ -0.51
VARS2-212ENST00000542001 TSHBP01222 138 aa11.85□□□□□ -0.51
VARS2-212ENST00000542001 TEN1Q86WV5 123 aa11.85□□□□□ -0.51
VARS2-212ENST00000542001 LINC00482Q8N8I6 264 aa11.85□□□□□ -0.51
VARS2-212ENST00000542001 CMC4P56277 68 aaPredicted RBP11.85□□□□□ -0.51
VARS2-212ENST00000542001 ICOSQ9Y6W8 199 aa11.85□□□□□ -0.51
VARS2-212ENST00000542001 IGSF10Q6WRI0 2623 aa11.85□□□□□ -0.51
VARS2-212ENST00000542001 COL27A1Q8IZC6 1860 aaPredicted RBP11.85□□□□□ -0.51
VARS2-212ENST00000542001 IGHV1-58A0A0C4DH39 117 aa11.85□□□□□ -0.51
VARS2-212ENST00000542001 TRBV27A0A0K0K1C4 114 aa11.85□□□□□ -0.51
VARS2-212ENST00000542001 BBC3Q96PG8 261 aaPredicted RBP11.85□□□□□ -0.51
VARS2-212ENST00000542001 Q9UF83 564 aa11.85□□□□□ -0.51
VARS2-212ENST00000542001 LAMTOR3Q9UHA4 124 aa11.85□□□□□ -0.51
VARS2-212ENST00000542001 TSPEAR-AS2P59090 65 aa11.84□□□□□ -0.51
VARS2-212ENST00000542001 CFAP126Q5VTH2 177 aa11.84□□□□□ -0.51
VARS2-212ENST00000542001 MT-ATP8P03928 68 aa11.84□□□□□ -0.51
VARS2-212ENST00000542001 SLC25A29Q8N8R3 303 aa11.84□□□□□ -0.51
VARS2-212ENST00000542001 C4orf3Q8WVX3 66 aa11.84□□□□□ -0.51
VARS2-212ENST00000542001 LGALS9O00182 355 aa11.84□□□□□ -0.51
VARS2-212ENST00000542001 IGLV2-18A0A075B6J9 118 aa11.83□□□□□ -0.52
VARS2-212ENST00000542001 PLA2G2AP14555 144 aa11.83□□□□□ -0.52
VARS2-212ENST00000542001 Q9HAA7 133 aa11.83□□□□□ -0.52
VARS2-212ENST00000542001 TEX15Q9BXT5 2789 aa11.83□□□□□ -0.52
VARS2-212ENST00000542001 PIK3CD-AS1Q5SR53 167 aa11.83□□□□□ -0.52
VARS2-212ENST00000542001 RNF183Q96D59 192 aa11.83□□□□□ -0.52
VARS2-212ENST00000542001 ZANQ9Y493 2812 aa11.83□□□□□ -0.52
VARS2-212ENST00000542001 SPANXB1Q9NS25 103 aaPredicted RBP11.83□□□□□ -0.52
VARS2-212ENST00000542001 MIR7-3HGQ8N6C7 128 aa11.82□□□□□ -0.52
VARS2-212ENST00000542001 TRAV4A0A0B4J268 109 aa11.82□□□□□ -0.52
VARS2-212ENST00000542001 TEX49A0A1B0GTD5 131 aa11.82□□□□□ -0.52
VARS2-212ENST00000542001 SND1-IT1Q9HBX3 110 aa11.82□□□□□ -0.52
VARS2-212ENST00000542001 IGHV4-4A0A075B6R2 117 aa11.81□□□□□ -0.52
VARS2-212ENST00000542001 BAALC-AS2P0C853 105 aa11.81□□□□□ -0.52
VARS2-212ENST00000542001 ATP6V0E2Q8NHE4 81 aa11.81□□□□□ -0.52
VARS2-212ENST00000542001 IGIPA6NJ69 53 aa11.81□□□□□ -0.52
VARS2-212ENST00000542001 SOCS3O14543 225 aa11.81□□□□□ -0.52
VARS2-212ENST00000542001 GCN1Q92616 2671 aaKnown RBP11.8□□□□□ -0.52
VARS2-212ENST00000542001 ATP5G1P05496 136 aa11.8□□□□□ -0.52
VARS2-212ENST00000542001 TMEM223A0PJW6 202 aa11.8□□□□□ -0.52
VARS2-212ENST00000542001 PSMG3-AS1Q96PY0 264 aa11.8□□□□□ -0.52
VARS2-212ENST00000542001 Q6ZSN1 163 aa11.79□□□□□ -0.52
VARS2-212ENST00000542001 C9orf85Q96MD7 179 aa11.78□□□□□ -0.52
VARS2-212ENST00000542001 MRAPQ8TCY5 172 aa11.78□□□□□ -0.52
VARS2-212ENST00000542001 EDA2RQ9HAV5 297 aa11.78□□□□□ -0.52
VARS2-212ENST00000542001 IGHV3-30P01768 117 aa11.78□□□□□ -0.52
VARS2-212ENST00000542001 IGHV3-33P01772 117 aa11.78□□□□□ -0.52
VARS2-212ENST00000542001 IGHV3-30-5P0DP03 117 aa11.78□□□□□ -0.52
VARS2-212ENST00000542001 LINC00526Q96FQ7 95 aa11.77□□□□□ -0.52
VARS2-212ENST00000542001 TMEM89A2RUT3 159 aa11.77□□□□□ -0.53
VARS2-212ENST00000542001 ZMAT4Q9H898 229 aa11.77□□□□□ -0.53
VARS2-212ENST00000542001 COX8CQ7Z4L0 72 aa11.77□□□□□ -0.53
VARS2-212ENST00000542001 TMEM263Q8WUH6 116 aaKnown RBP11.77□□□□□ -0.53
VARS2-212ENST00000542001 CITED1Q99966 193 aa11.77□□□□□ -0.53
VARS2-212ENST00000542001 TRIAP1O43715 76 aa11.76□□□□□ -0.53
VARS2-212ENST00000542001 DAZ2Q13117 558 aaKnown RBP11.76□□□□□ -0.53
VARS2-212ENST00000542001 DAZ4Q86SG3 579 aaKnown RBP11.76□□□□□ -0.53
VARS2-212ENST00000542001 DAZ3Q9NR90 486 aaKnown RBP11.76□□□□□ -0.53
VARS2-212ENST00000542001 ODF3L2Q3SX64 289 aa11.76□□□□□ -0.53
VARS2-212ENST00000542001 UBR5O95071 2799 aaPredicted RBP11.76□□□□□ -0.53
VARS2-212ENST00000542001 IFITM1P13164 125 aa11.76□□□□□ -0.53
VARS2-212ENST00000542001 LINC01006Q8NI28 216 aa11.76□□□□□ -0.53
VARS2-212ENST00000542001 C16orf74Q96GX8 76 aa11.76□□□□□ -0.53
VARS2-212ENST00000542001 DNAJC30Q96LL9 226 aa11.76□□□□□ -0.53
VARS2-212ENST00000542001 CRYBG3Q68DQ2 2970 aa11.76□□□□□ -0.53
VARS2-212ENST00000542001 IGLV4-69A0A075B6H9 119 aa11.76□□□□□ -0.53
VARS2-212ENST00000542001 POM121L12Q8N7R1 296 aa11.76□□□□□ -0.53
VARS2-212ENST00000542001 COX7B2Q8TF08 81 aa11.75□□□□□ -0.53
VARS2-212ENST00000542001 UFSP1Q6NVU6 142 aa11.75□□□□□ -0.53
VARS2-212ENST00000542001 TRBV6-5A0A0K0K1A5 114 aa11.73□□□□□ -0.53
VARS2-212ENST00000542001 KLK12Q9UKR0 248 aa11.73□□□□□ -0.53
VARS2-212ENST00000542001 INAFM1C9JVW0 142 aa11.73□□□□□ -0.53
VARS2-212ENST00000542001 RBMY1FQ15415 496 aaKnown RBP11.73□□□□□ -0.53
VARS2-212ENST00000542001 MIAQ16674 131 aa11.73□□□□□ -0.53
VARS2-212ENST00000542001 ODF3Q96PU9 254 aa11.73□□□□□ -0.53
VARS2-212ENST00000542001 LECT2O14960 151 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms