RNA–Protein interactions for RNA: ENST00000538548.5

SFSWAP-207, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 2,636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-207ENST00000538548 COPS9Q8WXC6 57 aa13.52□□□□□ -0.25
SFSWAP-207ENST00000538548 PEMTQ9UBM1 199 aa13.52□□□□□ -0.25
SFSWAP-207ENST00000538548 NRGNQ92686 78 aa13.51□□□□□ -0.25
SFSWAP-207ENST00000538548 ZANQ9Y493 2812 aa13.51□□□□□ -0.25
SFSWAP-207ENST00000538548 BEAN1Q3B7T3 259 aa13.51□□□□□ -0.25
SFSWAP-207ENST00000538548 A6NDX4 124 aa13.5□□□□□ -0.25
SFSWAP-207ENST00000538548 C5orf38Q86SI9 138 aa13.5□□□□□ -0.25
SFSWAP-207ENST00000538548 LINC00467Q9BRT7 94 aa13.5□□□□□ -0.25
SFSWAP-207ENST00000538548 PTPN13Q12923 2485 aa13.5□□□□□ -0.25
SFSWAP-207ENST00000538548 H3BUX3 64 aa13.5□□□□□ -0.25
SFSWAP-207ENST00000538548 CFHR3Q02985 330 aa13.49□□□□□ -0.25
SFSWAP-207ENST00000538548 Q9H8V8 135 aa13.49□□□□□ -0.25
SFSWAP-207ENST00000538548 BAALC-AS2P0C853 105 aa13.49□□□□□ -0.25
SFSWAP-207ENST00000538548 HERVK_113P63121 156 aa13.49□□□□□ -0.25
SFSWAP-207ENST00000538548 NBPF19A0A087WUL8 3843 aa13.48□□□□□ -0.25
SFSWAP-207ENST00000538548 FAM222AQ5U5X8 452 aa13.48□□□□□ -0.25
SFSWAP-207ENST00000538548 Q8N2B8 174 aa13.48□□□□□ -0.25
SFSWAP-207ENST00000538548 Q9UF83 564 aa13.48□□□□□ -0.25
SFSWAP-207ENST00000538548 IGLV5-39A0A0G2JS06 123 aa13.48□□□□□ -0.25
SFSWAP-207ENST00000538548 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.48□□□□□ -0.25
SFSWAP-207ENST00000538548 FBN2P35556 2912 aa13.48□□□□□ -0.25
SFSWAP-207ENST00000538548 ABCA2Q9BZC7 2435 aa13.48□□□□□ -0.25
SFSWAP-207ENST00000538548 RBMY1A1P0DJD3 496 aaKnown RBP13.47□□□□□ -0.25
SFSWAP-207ENST00000538548 RBMY1CP0DJD4 496 aa13.47□□□□□ -0.25
SFSWAP-207ENST00000538548 INAFM2P0DMQ5 153 aa13.47□□□□□ -0.25
SFSWAP-207ENST00000538548 RBMY1FQ15415 496 aaKnown RBP13.47□□□□□ -0.25
SFSWAP-207ENST00000538548 BBC3Q96PG8 261 aaPredicted RBP13.46□□□□□ -0.25
SFSWAP-207ENST00000538548 NACAE9PAV3 2078 aa13.46□□□□□ -0.25
SFSWAP-207ENST00000538548 KNCNA6PVL3 124 aa13.46□□□□□ -0.25
SFSWAP-207ENST00000538548 HTN1P15515 57 aa13.46□□□□□ -0.25
SFSWAP-207ENST00000538548 COX7CP15954 63 aa13.46□□□□□ -0.25
SFSWAP-207ENST00000538548 Q6ZSN1 163 aa13.46□□□□□ -0.25
SFSWAP-207ENST00000538548 C22orf24Q9Y442 160 aa13.46□□□□□ -0.25
SFSWAP-207ENST00000538548 SORL1Q92673 2214 aa13.45□□□□□ -0.26
SFSWAP-207ENST00000538548 SOSTDC1Q6X4U4 206 aa13.45□□□□□ -0.26
SFSWAP-207ENST00000538548 PIK3CD-AS1Q5SR53 167 aa13.45□□□□□ -0.26
SFSWAP-207ENST00000538548 IGHV4-38-2P0DP08 117 aa13.44□□□□□ -0.26
SFSWAP-207ENST00000538548 ZNF625Q96I27 306 aaPredicted RBP13.44□□□□□ -0.26
SFSWAP-207ENST00000538548 A0A0U1RRA0 63 aa13.44□□□□□ -0.26
SFSWAP-207ENST00000538548 COX6A2Q02221 97 aa13.44□□□□□ -0.26
SFSWAP-207ENST00000538548 LRRC75A-AS1Q8N1F1 130 aa13.44□□□□□ -0.26
SFSWAP-207ENST00000538548 CSDC2Q9Y534 153 aaKnown RBP13.44□□□□□ -0.26
SFSWAP-207ENST00000538548 A0A1B0GX51 115 aa13.43□□□□□ -0.26
SFSWAP-207ENST00000538548 DGAT2L7PQ6IED9 249 aa13.43□□□□□ -0.26
SFSWAP-207ENST00000538548 IGHV3-38A0A0C4DH36 116 aa13.43□□□□□ -0.26
SFSWAP-207ENST00000538548 J3KT08 172 aa13.43□□□□□ -0.26
SFSWAP-207ENST00000538548 PSMB8P28062 276 aa13.43□□□□□ -0.26
SFSWAP-207ENST00000538548 HIST1H4AP62805 103 aaKnown RBP13.43□□□□□ -0.26
SFSWAP-207ENST00000538548 CRYGAP11844 174 aa13.42□□□□□ -0.26
SFSWAP-207ENST00000538548 C2orf48Q96LS8 159 aa13.42□□□□□ -0.26
SFSWAP-207ENST00000538548 FAM218AQ96MZ4 157 aa13.42□□□□□ -0.26
SFSWAP-207ENST00000538548 IGHV3OR16-12A0A075B7B8 117 aa13.42□□□□□ -0.26
SFSWAP-207ENST00000538548 GAGE2AQ6NT46 116 aa13.42□□□□□ -0.26
SFSWAP-207ENST00000538548 ATOX1O00244 68 aa13.41□□□□□ -0.26
SFSWAP-207ENST00000538548 LINC00242Q5T6M2 205 aa13.41□□□□□ -0.26
SFSWAP-207ENST00000538548 KLK5Q9Y337 293 aaPredicted RBP13.41□□□□□ -0.26
SFSWAP-207ENST00000538548 LOC107984640A0A0U1RRK4 108 aa13.41□□□□□ -0.26
SFSWAP-207ENST00000538548 IGHV3-53P01767 116 aa13.41□□□□□ -0.26
SFSWAP-207ENST00000538548 UBR5O95071 2799 aaPredicted RBP13.4□□□□□ -0.26
SFSWAP-207ENST00000538548 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.4□□□□□ -0.262e-7■■■□□ 17.9
SFSWAP-207ENST00000538548 SMIM1B2RUZ4 78 aa13.4□□□□□ -0.26
SFSWAP-207ENST00000538548 PRIMA1Q86XR5 153 aa13.4□□□□□ -0.26
SFSWAP-207ENST00000538548 TENM4Q6N022 2769 aa13.39□□□□□ -0.27
SFSWAP-207ENST00000538548 ZNF415Q09FC8 603 aa13.39□□□□□ -0.27
SFSWAP-207ENST00000538548 MALP21145 153 aa13.39□□□□□ -0.27
SFSWAP-207ENST00000538548 HIST2H2BCQ6DN03 193 aa13.39□□□□□ -0.27
SFSWAP-207ENST00000538548 HIST2H2BDQ6DRA6 164 aa13.39□□□□□ -0.27
SFSWAP-207ENST00000538548 FAM19A3Q7Z5A8 133 aa13.39□□□□□ -0.27
SFSWAP-207ENST00000538548 ANKRD17O75179 2603 aaKnown RBP13.38□□□□□ -0.27
SFSWAP-207ENST00000538548 CSPG4Q6UVK1 2322 aa13.37□□□□□ -0.27
SFSWAP-207ENST00000538548 SYNJ2BPP57105 145 aa13.37□□□□□ -0.27
SFSWAP-207ENST00000538548 PF4P02776 101 aa13.37□□□□□ -0.27
SFSWAP-207ENST00000538548 PRM2P04554 102 aa13.37□□□□□ -0.27
SFSWAP-207ENST00000538548 TLN2Q9Y4G6 2542 aa13.36□□□□□ -0.27
SFSWAP-207ENST00000538548 RPL28P46779 137 aaKnown RBP13.36□□□□□ -0.27
SFSWAP-207ENST00000538548 RPS28P62857 69 aaKnown RBP13.36□□□□□ -0.27
SFSWAP-207ENST00000538548 Q9HAA7 133 aa13.36□□□□□ -0.27
SFSWAP-207ENST00000538548 CCDC168Q8NDH2 2452 aa13.35□□□□□ -0.27
SFSWAP-207ENST00000538548 TRAV13-2A0A0B4J235 113 aa13.35□□□□□ -0.27
SFSWAP-207ENST00000538548 NAV2Q8IVL1 2488 aa13.34□□□□□ -0.27
SFSWAP-207ENST00000538548 IGHV4-61A0A0C4DH41 118 aa13.34□□□□□ -0.27
SFSWAP-207ENST00000538548 A8MTW9 85 aa13.34□□□□□ -0.27
SFSWAP-207ENST00000538548 C5orf47Q569G3 176 aa13.34□□□□□ -0.27
SFSWAP-207ENST00000538548 FAM19A5Q7Z5A7 132 aaPredicted RBP13.34□□□□□ -0.27
SFSWAP-207ENST00000538548 OVOL2Q9BRP0 275 aa13.34□□□□□ -0.27
SFSWAP-207ENST00000538548 HELZ2Q9BYK8 2649 aaKnown RBP13.34□□□□□ -0.27
SFSWAP-207ENST00000538548 DNAL4O96015 105 aa13.34□□□□□ -0.27
SFSWAP-207ENST00000538548 C10orf99Q6UWK7 81 aa13.34□□□□□ -0.27
SFSWAP-207ENST00000538548 CREBBPQ92793 2442 aa13.34□□□□□ -0.27
SFSWAP-207ENST00000538548 TMEM89A2RUT3 159 aa13.33□□□□□ -0.28
SFSWAP-207ENST00000538548 RPL18AQ02543 176 aaKnown RBP13.33□□□□□ -0.28
SFSWAP-207ENST00000538548 hADV29S1A0JD25 119 aa13.32□□□□□ -0.28
SFSWAP-207ENST00000538548 CRPP02741 224 aa13.32□□□□□ -0.28
SFSWAP-207ENST00000538548 TRAV13-1A0A0B4J241 112 aa13.31□□□□□ -0.28
SFSWAP-207ENST00000538548 RBMY1BA6NDE4 496 aaKnown RBP13.31□□□□□ -0.28
SFSWAP-207ENST00000538548 RBMY1EA6NEQ0 496 aaKnown RBP13.31□□□□□ -0.28
SFSWAP-207ENST00000538548 SMIM9A6NGZ8 99 aa13.31□□□□□ -0.28
SFSWAP-207ENST00000538548 F5H768 121 aa13.31□□□□□ -0.28
SFSWAP-207ENST00000538548 RBMY1DP0C7P1 496 aaKnown RBP13.31□□□□□ -0.28
SFSWAP-207ENST00000538548 C11orf72Q8NBR9 251 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms