RNA–Protein interactions for RNA: ENST00000524165.5

PVT1-220, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 458 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-220ENST00000524165 GATD1Q8NB37 220 aa10.09□□□□□ -0.79
PVT1-220ENST00000524165 PPDPFQ9H3Y8 114 aa10.09□□□□□ -0.79
PVT1-220ENST00000524165 C1orf196B1AJZ1 125 aa10.08□□□□□ -0.8
PVT1-220ENST00000524165 F2Z2F3 143 aa10.08□□□□□ -0.8
PVT1-220ENST00000524165 INMT-MINDY4F8WBC2 141 aa10.08□□□□□ -0.8
PVT1-220ENST00000524165 CTAG1AP78358 180 aa10.08□□□□□ -0.8
PVT1-220ENST00000524165 F8WDY8 70 aa10.07□□□□□ -0.8
PVT1-220ENST00000524165 RPS20P60866 119 aaKnown RBP10.07□□□□□ -0.8
PVT1-220ENST00000524165 SPAG11BQ08648 103 aa10.07□□□□□ -0.8
PVT1-220ENST00000524165 MRPL52Q86TS9 123 aaKnown RBP10.06□□□□□ -0.8
PVT1-220ENST00000524165 LINC00304Q8N9R0 145 aa10.06□□□□□ -0.8
PVT1-220ENST00000524165 MAP1LC3B2A6NCE7 125 aa10.05□□□□□ -0.8
PVT1-220ENST00000524165 NUPR1O60356 82 aa10.05□□□□□ -0.8
PVT1-220ENST00000524165 TSHBP01222 138 aa10.05□□□□□ -0.8
PVT1-220ENST00000524165 CFC1BP0CG36 223 aa10.05□□□□□ -0.8
PVT1-220ENST00000524165 OR10D4PQ8NGN7 298 aa10.05□□□□□ -0.8
PVT1-220ENST00000524165 RPL39LQ96EH5 51 aaKnown RBP10.05□□□□□ -0.8
PVT1-220ENST00000524165 MAP1LC3BQ9GZQ8 125 aa10.05□□□□□ -0.8
PVT1-220ENST00000524165 SDHAF1A6NFY7 115 aa10.04□□□□□ -0.8
PVT1-220ENST00000524165 TMEM241Q24JQ0 296 aa10.04□□□□□ -0.8
PVT1-220ENST00000524165 LCE2CQ5TA81 110 aa10.04□□□□□ -0.8
PVT1-220ENST00000524165 MRAP2Q96G30 205 aa10.04□□□□□ -0.8
PVT1-220ENST00000524165 I3L3M4 83 aa10.03□□□□□ -0.8
PVT1-220ENST00000524165 SSNA1O43805 119 aa10.03□□□□□ -0.8
PVT1-220ENST00000524165 GAGE2EQ4V326 116 aa10.03□□□□□ -0.8
PVT1-220ENST00000524165 KRTAP13-2Q52LG2 175 aa10.03□□□□□ -0.8
PVT1-220ENST00000524165 ENKURQ8TC29 256 aa10.03□□□□□ -0.8
PVT1-220ENST00000524165 SMDT1Q9H4I9 107 aa10.03□□□□□ -0.8
PVT1-220ENST00000524165 GAGE2DQ9UEU5 116 aa10.03□□□□□ -0.8
PVT1-220ENST00000524165 SCO2A0A1W2PP80 73 aa10.02□□□□□ -0.81
PVT1-220ENST00000524165 NDUFA1O15239 70 aa10.02□□□□□ -0.81
PVT1-220ENST00000524165 PAGE4O60829 102 aa10.02□□□□□ -0.81
PVT1-220ENST00000524165 PMCHP20382 165 aa10.02□□□□□ -0.81
PVT1-220ENST00000524165 LYZL1Q6UWQ5 148 aa10.02□□□□□ -0.81
PVT1-220ENST00000524165 C5orf38Q86SI9 138 aa10.02□□□□□ -0.81
PVT1-220ENST00000524165 FAM210AQ96ND0 272 aa10.02□□□□□ -0.81
PVT1-220ENST00000524165 AKR1C8PQ5T2L2 129 aa10.01□□□□□ -0.81
PVT1-220ENST00000524165 LINC00337Q8N6G1 96 aa10.01□□□□□ -0.81
PVT1-220ENST00000524165 ALG5Q9Y673 324 aa10.01□□□□□ -0.81
PVT1-220ENST00000524165 XKRY2A2RUG3 117 aa10□□□□□ -0.81
PVT1-220ENST00000524165 RPL28P46779 137 aaKnown RBP10□□□□□ -0.81
PVT1-220ENST00000524165 SEC61BP60468 96 aaKnown RBP10□□□□□ -0.81
PVT1-220ENST00000524165 C10orf25Q5T742 122 aa10□□□□□ -0.81
PVT1-220ENST00000524165 TEX261Q6UWH6 196 aa10□□□□□ -0.81
PVT1-220ENST00000524165 RPL7L1Q6DKI1 246 aaKnown RBP9.99□□□□□ -0.81
PVT1-220ENST00000524165 TMUB2Q71RG4 321 aa9.99□□□□□ -0.81
PVT1-220ENST00000524165 CTDSP1Q9GZU7 261 aa9.99□□□□□ -0.81
PVT1-220ENST00000524165 C6orf48Q9UBA6 75 aa9.99□□□□□ -0.81
PVT1-220ENST00000524165 C9orf62Q8N4C0 152 aa9.98□□□□□ -0.81
PVT1-220ENST00000524165 ANAPC11Q9NYG5 84 aa9.98□□□□□ -0.81
PVT1-220ENST00000524165 BORCS7-ASMTA0A0B4J1R7 106 aa9.97□□□□□ -0.81
PVT1-220ENST00000524165 CTRLP40313 264 aa9.97□□□□□ -0.81
PVT1-220ENST00000524165 MT1HP80294 61 aa9.97□□□□□ -0.81
PVT1-220ENST00000524165 TWIST1Q15672 202 aa9.97□□□□□ -0.81
PVT1-220ENST00000524165 UNQ6190/PRO20217Q6UXQ8 127 aa9.97□□□□□ -0.81
PVT1-220ENST00000524165 ORAOV1Q8WV07 137 aa9.97□□□□□ -0.81
PVT1-220ENST00000524165 CNFNQ9BYD5 112 aa9.97□□□□□ -0.81
PVT1-220ENST00000524165 TRAV13-1A0A0B4J241 112 aa9.96□□□□□ -0.82
PVT1-220ENST00000524165 TRBV6-5A0A0K0K1A5 114 aa9.96□□□□□ -0.82
PVT1-220ENST00000524165 PFDN1O60925 122 aa9.96□□□□□ -0.82
PVT1-220ENST00000524165 IFNA1P01562 189 aa9.96□□□□□ -0.82
PVT1-220ENST00000524165 LORP23490 312 aaPredicted RBP9.96□□□□□ -0.82
PVT1-220ENST00000524165 DEFA1P59665 94 aa9.96□□□□□ -0.82
PVT1-220ENST00000524165 KRTAP13-3Q3SY46 172 aa9.96□□□□□ -0.82
PVT1-220ENST00000524165 FAM229BQ4G0N7 80 aa9.96□□□□□ -0.82
PVT1-220ENST00000524165 LINC00242Q5T6M2 205 aa9.96□□□□□ -0.82
PVT1-220ENST00000524165 FP248Q71RG6 208 aaPredicted RBP9.96□□□□□ -0.82
PVT1-220ENST00000524165 CSDC2Q9Y534 153 aaKnown RBP9.96□□□□□ -0.82
PVT1-220ENST00000524165 RPL35P42766 123 aaKnown RBP9.95□□□□□ -0.82
PVT1-220ENST00000524165 C9orf129Q5T035 196 aaKnown RBP9.95□□□□□ -0.82
PVT1-220ENST00000524165 MARVELD1Q9BSK0 173 aa9.95□□□□□ -0.82
PVT1-220ENST00000524165 TMEM242Q9NWH2 141 aa9.95□□□□□ -0.82
PVT1-220ENST00000524165 C7orf77A4D0Y5 90 aa9.94□□□□□ -0.82
PVT1-220ENST00000524165 CYTL1Q9NRR1 136 aa9.94□□□□□ -0.82
PVT1-220ENST00000524165 NDUFC2-KCTD14E9PQ53 114 aa9.92□□□□□ -0.82
PVT1-220ENST00000524165 BCE1O60756 84 aa9.92□□□□□ -0.82
PVT1-220ENST00000524165 RNASE13Q5GAN3 156 aaKnown RBP9.92□□□□□ -0.82
PVT1-220ENST00000524165 KRTAP10-6P60371 365 aaPredicted RBP9.91□□□□□ -0.82
PVT1-220ENST00000524165 SMAGPQ0VAQ4 97 aa9.91□□□□□ -0.82
PVT1-220ENST00000524165 LBHQ53QV2 105 aaPredicted RBP9.91□□□□□ -0.82
PVT1-220ENST00000524165 SMIM15Q7Z3B0 74 aa9.91□□□□□ -0.82
PVT1-220ENST00000524165 RNASE7Q9H1E1 156 aaKnown RBP9.91□□□□□ -0.82
PVT1-220ENST00000524165 KRTAP19-2Q3LHN2 52 aa9.9□□□□□ -0.82
PVT1-220ENST00000524165 CENPWQ5EE01 88 aa9.9□□□□□ -0.82
PVT1-220ENST00000524165 ST20Q9HBF5 79 aa9.9□□□□□ -0.82
PVT1-220ENST00000524165 UBE2D4Q9Y2X8 147 aa9.9□□□□□ -0.82
PVT1-220ENST00000524165 C22orf24Q9Y442 160 aa9.9□□□□□ -0.82
PVT1-220ENST00000524165 IGKV2D-26A0A0A0MRZ7 120 aa9.89□□□□□ -0.83
PVT1-220ENST00000524165 TRBV30A0A0K0K1B3 111 aa9.89□□□□□ -0.83
PVT1-220ENST00000524165 SMIM12Q96EX1 92 aa9.89□□□□□ -0.83
PVT1-220ENST00000524165 IGHV3OR16-9A0A0B4J2B5 98 aa9.88□□□□□ -0.83
PVT1-220ENST00000524165 TRBV27A0A0K0K1C4 114 aa9.88□□□□□ -0.83
PVT1-220ENST00000524165 POLR2KP53803 58 aaKnown RBP9.88□□□□□ -0.83
PVT1-220ENST00000524165 FOXA3P55318 350 aaPredicted RBP9.88□□□□□ -0.83
PVT1-220ENST00000524165 C11orf52Q96A22 123 aa9.87□□□□□ -0.83
PVT1-220ENST00000524165 Q6ZUT4 128 aa9.86□□□□□ -0.83
PVT1-220ENST00000524165 SFT2D1Q8WV19 159 aa9.86□□□□□ -0.83
PVT1-220ENST00000524165 MBD3L1Q8WWY6 194 aa9.86□□□□□ -0.83
PVT1-220ENST00000524165 KIAA0087Q14695 138 aa9.85□□□□□ -0.83
PVT1-220ENST00000524165 KCNRGQ8N5I3 272 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms