RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 IGLV4-60A0A075B6I1 120 aa6.75□□□□□ -1.33
NUP54-203ENST00000504173 A0A1B0GUV1 79 aa6.75□□□□□ -1.33
NUP54-203ENST00000504173 K7EMI3 77 aa6.75□□□□□ -1.33
NUP54-203ENST00000504173 CRPP02741 224 aa6.75□□□□□ -1.33
NUP54-203ENST00000504173 ZNF25P17030 456 aaPredicted RBP6.75□□□□□ -1.33
NUP54-203ENST00000504173 LAGE3Q14657 143 aa6.75□□□□□ -1.33
NUP54-203ENST00000504173 ORMDL2Q53FV1 153 aa6.75□□□□□ -1.33
NUP54-203ENST00000504173 FA2HQ7L5A8 372 aa6.75□□□□□ -1.33
NUP54-203ENST00000504173 C20orf203Q8NBC4 194 aa6.75□□□□□ -1.33
NUP54-203ENST00000504173 C18orf32Q8TCD1 76 aa6.75□□□□□ -1.33
NUP54-203ENST00000504173 UBE2WQ96B02 151 aa6.75□□□□□ -1.33
NUP54-203ENST00000504173 TMEM101Q96IK0 257 aa6.75□□□□□ -1.33
NUP54-203ENST00000504173 Q9HAA7 133 aa6.75□□□□□ -1.33
NUP54-203ENST00000504173 TRAV8-3A0A0A6YYJ7 113 aa6.74□□□□□ -1.33
NUP54-203ENST00000504173 BTF3P20290 206 aaKnown RBP6.74□□□□□ -1.33
NUP54-203ENST00000504173 RPL39P62891 51 aaKnown RBP6.74□□□□□ -1.33
NUP54-203ENST00000504173 DGAT2L7PQ6IED9 249 aa6.74□□□□□ -1.33
NUP54-203ENST00000504173 CLPSL2Q6UWE3 100 aa6.74□□□□□ -1.33
NUP54-203ENST00000504173 MRPL52Q86TS9 123 aaKnown RBP6.74□□□□□ -1.33
NUP54-203ENST00000504173 NFE4Q86UQ8 179 aa6.74□□□□□ -1.33
NUP54-203ENST00000504173 OR5A1Q8NGJ0 315 aa6.74□□□□□ -1.33
NUP54-203ENST00000504173 RAB5BP61020 215 aa6.73□□□□□ -1.33
NUP54-203ENST00000504173 Q0VG73 95 aa6.73□□□□□ -1.33
NUP54-203ENST00000504173 LINC00269Q8N2A0 174 aa6.73□□□□□ -1.33
NUP54-203ENST00000504173 CYSLTR1Q9Y271 337 aa6.73□□□□□ -1.33
NUP54-203ENST00000504173 UBE2D4Q9Y2X8 147 aa6.73□□□□□ -1.33
NUP54-203ENST00000504173 LINC01546A6NGU7 62 aa6.72□□□□□ -1.33
NUP54-203ENST00000504173 G0S2P27469 103 aa6.72□□□□□ -1.33
NUP54-203ENST00000504173 REG3AQ06141 175 aa6.72□□□□□ -1.33
NUP54-203ENST00000504173 ENHOQ6UWT2 76 aa6.72□□□□□ -1.33
NUP54-203ENST00000504173 C2orf66Q6UXQ4 117 aa6.72□□□□□ -1.33
NUP54-203ENST00000504173 RMI2Q96E14 147 aa6.72□□□□□ -1.33
NUP54-203ENST00000504173 TIMM21Q9BVV7 248 aa6.72□□□□□ -1.33
NUP54-203ENST00000504173 SPANXA1Q9NS26 97 aa6.72□□□□□ -1.33
NUP54-203ENST00000504173 AP5S1Q9NUS5 200 aa6.72□□□□□ -1.33
NUP54-203ENST00000504173 DNAH5Q8TE73 4624 aa6.72□□□□□ -1.33
NUP54-203ENST00000504173 IGKV2D-24A0A075B6R9 120 aa6.71□□□□□ -1.34
NUP54-203ENST00000504173 IGKV3OR2-268A0A0C4DH90 116 aa6.71□□□□□ -1.34
NUP54-203ENST00000504173 LINC00614P0C842 121 aa6.71□□□□□ -1.34
NUP54-203ENST00000504173 INAFM2P0DMQ5 153 aa6.71□□□□□ -1.34
NUP54-203ENST00000504173 MIAQ16674 131 aa6.71□□□□□ -1.34
NUP54-203ENST00000504173 BAGE3Q86Y29 109 aa6.71□□□□□ -1.34
NUP54-203ENST00000504173 TM2D2Q9BX73 214 aa6.71□□□□□ -1.34
NUP54-203ENST00000504173 PRR34Q9NV39 138 aa6.71□□□□□ -1.34
NUP54-203ENST00000504173 CSDC2Q9Y534 153 aaKnown RBP6.71□□□□□ -1.34
NUP54-203ENST00000504173 PSCAO43653 123 aa6.7□□□□□ -1.34
NUP54-203ENST00000504173 RNASE13Q5GAN3 156 aaKnown RBP6.7□□□□□ -1.34
NUP54-203ENST00000504173 Q6ZRN7 208 aaPredicted RBP6.7□□□□□ -1.34
NUP54-203ENST00000504173 Q6ZUT4 128 aa6.7□□□□□ -1.34
NUP54-203ENST00000504173 ZNF664Q8N3J9 261 aa6.7□□□□□ -1.34
NUP54-203ENST00000504173 URB1-AS1Q96HZ7 61 aa6.7□□□□□ -1.34
NUP54-203ENST00000504173 C1orf43Q9BWL3 253 aa6.7□□□□□ -1.34
NUP54-203ENST00000504173 CDC42SE2Q9NRR3 84 aa6.7□□□□□ -1.34
NUP54-203ENST00000504173 C16orf90A8MZG2 172 aa6.69□□□□□ -1.34
NUP54-203ENST00000504173 MRPS36P82909 103 aaKnown RBP6.69□□□□□ -1.34
NUP54-203ENST00000504173 TOMM6Q96B49 74 aa6.69□□□□□ -1.34
NUP54-203ENST00000504173 CHCHD1Q96BP2 118 aaKnown RBP6.69□□□□□ -1.34
NUP54-203ENST00000504173 OPRPNQ99935 248 aaPredicted RBP6.69□□□□□ -1.34
NUP54-203ENST00000504173 PYGO1Q9Y3Y4 419 aa6.69□□□□□ -1.34
NUP54-203ENST00000504173 COX11Q9Y6N1 276 aa6.69□□□□□ -1.34
NUP54-203ENST00000504173 IGLV10-54A0A075B6I4 117 aa6.68□□□□□ -1.34
NUP54-203ENST00000504173 IGLV4-3A0A075B6K6 122 aa6.68□□□□□ -1.34
NUP54-203ENST00000504173 TRAV8-4A0A0B4J246 113 aa6.68□□□□□ -1.34
NUP54-203ENST00000504173 LINC01549A6NIU2 74 aa6.68□□□□□ -1.34
NUP54-203ENST00000504173 HBDP02042 147 aa6.68□□□□□ -1.34
NUP54-203ENST00000504173 PMCHL1Q16048 86 aa6.68□□□□□ -1.34
NUP54-203ENST00000504173 Q6ZN92 141 aa6.68□□□□□ -1.34
NUP54-203ENST00000504173 SCGB3A1Q96QR1 104 aa6.68□□□□□ -1.34
NUP54-203ENST00000504173 FLG2Q5D862 2391 aaPredicted RBP6.68□□□□□ -1.34
NUP54-203ENST00000504173 LINC00959A0A1B0GUT2 108 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 IGIPA6NJ69 53 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 C1orf196B1AJZ1 125 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 EPM2AB3EWF7 344 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 HIST1H2BKO60814 126 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 HSBP1O75506 76 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 SERF1AO75920 110 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 HIST1H2BJP06899 126 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 HIST1H2BOP23527 126 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 HIST1H2BBP33778 126 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 HIST1H2BDP58876 126 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 HIST1H2BCP62807 126 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 TNP2Q05952 138 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 SS18Q15532 418 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 HIST2H2BEQ16778 126 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.67□□□□□ -1.34
NUP54-203ENST00000504173 HIST1H2BHQ93079 126 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 TMEM141Q96I45 108 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 TIMM17AQ99595 171 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 HIST1H2BNQ99877 126 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 HIST1H2BMQ99879 126 aa6.67□□□□□ -1.34
NUP54-203ENST00000504173 TRAV13-1A0A0B4J241 112 aa6.66□□□□□ -1.34
NUP54-203ENST00000504173 IFITM10A6NMD0 228 aa6.66□□□□□ -1.34
NUP54-203ENST00000504173 NPSP0C0P6 89 aa6.66□□□□□ -1.34
NUP54-203ENST00000504173 PAPPA-AS1Q5QFB9 102 aa6.66□□□□□ -1.34
NUP54-203ENST00000504173 TEX43Q6ZNM6 134 aa6.66□□□□□ -1.34
NUP54-203ENST00000504173 ERASQ7Z444 233 aa6.66□□□□□ -1.34
NUP54-203ENST00000504173 CHCHD10Q8WYQ3 142 aaPredicted RBP6.66□□□□□ -1.34
NUP54-203ENST00000504173 FAM104AQ969W3 186 aa6.66□□□□□ -1.34
NUP54-203ENST00000504173 A0A096LNJ9 63 aa6.65□□□□□ -1.34
NUP54-203ENST00000504173 GAGE12HA6NDE8 117 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms