RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 LOC100131303A0A0U1RQF7 123 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 TEX49A0A1B0GTD5 131 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 UBE2L5PA0A1B0GUS4 154 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 A0A1W2PQD3 144 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 C17orf51A8MQB3 221 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 C10orf142B7Z368 130 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 C4orf51C9J302 202 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 F6UB75 175 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 SMKR1H3BMG3 65 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 H3BMM0 161 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 HMGN4O00479 90 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 TIMM17BO60830 172 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 IGHV3-48P01763 117 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 PIRTP0C851 137 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 ZNF22P17026 224 aaPredicted RBP1.36□□□□□ -2.19
HMGB1-208ENST00000490788 CR1P17927 2039 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 CD24P25063 80 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 CXCL5P42830 114 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 SPINT3P49223 89 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 UBE2D3P61077 147 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 PCBD1P61457 104 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 DAD1P61803 113 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 UBE2D2P62837 147 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 RPL30P62888 115 aaKnown RBP1.36□□□□□ -2.19
HMGB1-208ENST00000490788 QRFPP83859 136 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 RPL18Q07020 188 aaKnown RBP1.36□□□□□ -2.19
HMGB1-208ENST00000490788 CENPWQ5EE01 88 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 FREM1Q5H8C1 2179 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 C1orf100Q5SVJ3 147 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 S100A7L2Q5SY68 101 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 TMEM170BQ5T4T1 132 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 C1orf140Q5VVS0 124 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 LGALS9CQ6DKI2 356 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 Q6ZRU5 148 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 C17orf82Q86X59 251 aaPredicted RBP1.36□□□□□ -2.19
HMGB1-208ENST00000490788 PDPNQ86YL7 162 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 FAM223AQ8IWN6 122 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 DEFB106AQ8N104 65 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 RPRMLQ8N4K4 120 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 C20orf203Q8NBC4 194 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 MYOZ3Q8TDC0 251 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 UBE2WQ96B02 151 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 ABHD14BQ96IU4 210 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 TRGV9Q99603 122 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 B9D2Q9BPU9 175 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 SRXN1Q9BYN0 137 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 OSTCQ9NRP0 149 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 TIMM9Q9Y5J7 89 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 LY96Q9Y6Y9 160 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 PRR14LQ5THK1 2151 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 NYNRINQ9P2P1 1898 aaKnown RBP1.35□□□□□ -2.19
HMGB1-208ENST00000490788 TRBV19A0A075B6N1 114 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 A0A0B4J2C4 111 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 IGHV1-58A0A0C4DH39 117 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 TRBV7-6A0A0J9YX20 115 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 A0A1B0GWA3 101 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 A0A1B0GXF2 115 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 FAM223BA6NKX1 122 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 IQCF6A8MYZ5 107 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 C9JCJ5 164 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 LINC01619G3V211 115 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 J3QT63 122 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 K7EIL1 84 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 LY6G6CO95867 125 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 IAPPP10997 89 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 LGALS3P17931 250 aaKnown RBP1.35□□□□□ -2.19
HMGB1-208ENST00000490788 COX5AP20674 150 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 CD70P32970 193 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 IFI27P40305 119 aaPredicted RBP1.35□□□□□ -2.19
HMGB1-208ENST00000490788 ZNF137PP52743 207 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 FXYD4P59646 89 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 HIST1H4AP62805 103 aaKnown RBP1.35□□□□□ -2.19
HMGB1-208ENST00000490788 MRPS36P82909 103 aaKnown RBP1.35□□□□□ -2.19
HMGB1-208ENST00000490788 RPL18AQ02543 176 aaKnown RBP1.35□□□□□ -2.19
HMGB1-208ENST00000490788 PSMG4Q5JS54 123 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 C2orf82Q6UX34 121 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 FAM19A3Q7Z5A8 133 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 C5orf38Q86SI9 138 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 LINC00643Q86TS7 51 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 MARCH3Q86UD3 253 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 CCL4L1Q8NHW4 92 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 SMCR5Q8TEV8 140 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 PATE1Q8WXA2 126 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 COPS9Q8WXC6 57 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 IFI27L1Q96BM0 104 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 ARHGAP5-AS1Q96IT6 56 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 ZNF714Q96N38 554 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 TXNDC17Q9BRA2 123 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 TM2D3Q9BRN9 247 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 SLC50A1Q9BRV3 221 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 SLC25A2Q9BXI2 301 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 PSENENQ9NZ42 101 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 LAMTOR3Q9UHA4 124 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 CCDC88CQ9P219 2028 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 CMYA5Q8N3K9 4069 aa1.35□□□□□ -2.19
HMGB1-208ENST00000490788 HRNRQ86YZ3 2850 aaPredicted RBP1.34□□□□□ -2.19
HMGB1-208ENST00000490788 ROS1P08922 2347 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 TRIP11Q15643 1979 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 DOCK10Q96BY6 2186 aa1.34□□□□□ -2.19
HMGB1-208ENST00000490788 MUC4Q99102 2169 aa1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms