RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 LINC00467Q9BRT7 94 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 EDA2RQ9HAV5 297 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 RETNQ9HD89 108 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 C11orf21Q9P2W6 132 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 KLK5Q9Y337 293 aaPredicted RBP5.6□□□□□ -1.51
USP4-207ENST00000462673 MUC4Q99102 2169 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 TRGV11A0A075B6L2 103 aa5.59□□□□□ -1.51
USP4-207ENST00000462673 IGHV1OR15-1A0A075B7D0 117 aa5.59□□□□□ -1.51
USP4-207ENST00000462673 IGHV4-28A0A0C4DH34 117 aa5.59□□□□□ -1.51
USP4-207ENST00000462673 ANXA2RQ3ZCQ2 193 aa5.59□□□□□ -1.51
USP4-207ENST00000462673 ZNF575Q86XF7 245 aa5.59□□□□□ -1.51
USP4-207ENST00000462673 ANKRD29Q8N6D5 301 aa5.59□□□□□ -1.51
USP4-207ENST00000462673 Q8NAQ8 132 aa5.59□□□□□ -1.51
USP4-207ENST00000462673 PLEKHB2Q96CS7 222 aa5.59□□□□□ -1.51
USP4-207ENST00000462673 X6R8D5 127 aa5.59□□□□□ -1.51
USP4-207ENST00000462673 NUPR2A6NF83 97 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 C11orf86A6NJI1 115 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 NXPH4O95158 308 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 TCL1BO95988 128 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 S100A4P26447 101 aaKnown RBP5.58□□□□□ -1.52
USP4-207ENST00000462673 EMP1P54849 157 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 PMVKQ15126 192 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 NFE4Q86UQ8 179 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 C10orf126Q8N4M7 172 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 ZFAND2AQ8N6M9 145 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 RASL10AQ92737 203 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 TMEM141Q96I45 108 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 TIMM17AQ99595 171 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 SPXQ9BT56 116 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 SPANXA1Q9NS26 97 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 PHLDA3Q9Y5J5 127 aa5.58□□□□□ -1.52
USP4-207ENST00000462673 A0A0B4J2C4 111 aa5.57□□□□□ -1.52
USP4-207ENST00000462673 A0A0J9YY99 117 aa5.57□□□□□ -1.52
USP4-207ENST00000462673 PRSS29PA6NIE9 313 aa5.57□□□□□ -1.52
USP4-207ENST00000462673 SNCGO76070 127 aa5.57□□□□□ -1.52
USP4-207ENST00000462673 RBMY1A1P0DJD3 496 aaKnown RBP5.57□□□□□ -1.52
USP4-207ENST00000462673 RBMY1CP0DJD4 496 aa5.57□□□□□ -1.52
USP4-207ENST00000462673 P0DMU3 169 aa5.57□□□□□ -1.52
USP4-207ENST00000462673 FAM231AP0DMU4 169 aa5.57□□□□□ -1.52
USP4-207ENST00000462673 FAM231CP0DMU5 169 aa5.57□□□□□ -1.52
USP4-207ENST00000462673 LGALS3P17931 250 aaKnown RBP5.57□□□□□ -1.52
USP4-207ENST00000462673 DAD1P61803 113 aa5.57□□□□□ -1.52
USP4-207ENST00000462673 ZNF415Q09FC8 603 aa5.57□□□□□ -1.52
USP4-207ENST00000462673 DAZ2Q13117 558 aaKnown RBP5.57□□□□□ -1.52
USP4-207ENST00000462673 RBMY1FQ15415 496 aaKnown RBP5.57□□□□□ -1.52
USP4-207ENST00000462673 CARD19Q96LW7 228 aa5.57□□□□□ -1.52
USP4-207ENST00000462673 PRO1854Q9UHT4 67 aa5.57□□□□□ -1.52
USP4-207ENST00000462673 IGLV4-69A0A075B6H9 119 aa5.56□□□□□ -1.52
USP4-207ENST00000462673 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.56□□□□□ -1.52
USP4-207ENST00000462673 TRAV10A0A0B4J240 114 aa5.56□□□□□ -1.52
USP4-207ENST00000462673 DEFB4AO15263 64 aa5.56□□□□□ -1.52
USP4-207ENST00000462673 SLC25A20O43772 301 aa5.56□□□□□ -1.52
USP4-207ENST00000462673 IGHV3-30P01768 117 aa5.56□□□□□ -1.52
USP4-207ENST00000462673 SCGB1C2P0DMR2 95 aa5.56□□□□□ -1.52
USP4-207ENST00000462673 IGHV3-30-5P0DP03 117 aa5.56□□□□□ -1.52
USP4-207ENST00000462673 GAGE5Q13069 117 aa5.56□□□□□ -1.52
USP4-207ENST00000462673 GAGE6Q13070 117 aa5.56□□□□□ -1.52
USP4-207ENST00000462673 PRR9Q5T870 116 aa5.56□□□□□ -1.52
USP4-207ENST00000462673 Q6Q795 121 aa5.56□□□□□ -1.52
USP4-207ENST00000462673 POM121L12Q8N7R1 296 aa5.56□□□□□ -1.52
USP4-207ENST00000462673 RPL39LQ96EH5 51 aaKnown RBP5.56□□□□□ -1.52
USP4-207ENST00000462673 DNAH3Q8TD57 4116 aa5.55□□□□□ -1.52
USP4-207ENST00000462673 LEPROTO15243 131 aa5.55□□□□□ -1.52
USP4-207ENST00000462673 RHOHQ15669 191 aa5.55□□□□□ -1.52
USP4-207ENST00000462673 ATXN8Q156A1 80 aa5.55□□□□□ -1.52
USP4-207ENST00000462673 MRPL23Q16540 153 aaKnown RBP5.55□□□□□ -1.52
USP4-207ENST00000462673 FAM222AQ5U5X8 452 aa5.55□□□□□ -1.52
USP4-207ENST00000462673 CEMP1Q6PRD7 247 aaPredicted RBP5.55□□□□□ -1.52
USP4-207ENST00000462673 SLC25A29Q8N8R3 303 aa5.55□□□□□ -1.52
USP4-207ENST00000462673 PTH2Q96A98 100 aa5.55□□□□□ -1.52
USP4-207ENST00000462673 NOP10Q9NPE3 64 aaKnown RBP5.55□□□□□ -1.52
USP4-207ENST00000462673 TRGV2A0A075B6R0 118 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 DEFB131BA0A096LNP1 70 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 TRAV8-4A0A0B4J246 113 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 SDHAF1A6NFY7 115 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 C9JAW5 83 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 J3QQQ9 107 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 ATP5G1P05496 136 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 DEFB130BP0DP73 79 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 DEFB130AP0DP74 79 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 RPL13AP40429 203 aaKnown RBP5.54□□□□□ -1.52
USP4-207ENST00000462673 Q1RN00 199 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 ZFP2Q6ZN57 461 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 UBE2WQ96B02 151 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 LINC01600Q96MT4 127 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 KIR2DL4Q99706 377 aa5.54□□□□□ -1.52
USP4-207ENST00000462673 NBEAL2Q6ZNJ1 2754 aa5.53□□□□□ -1.52
USP4-207ENST00000462673 NACAE9PAV3 2078 aa5.53□□□□□ -1.52
USP4-207ENST00000462673 M0R2P5 195 aa5.53□□□□□ -1.52
USP4-207ENST00000462673 RHODO00212 210 aa5.53□□□□□ -1.52
USP4-207ENST00000462673 IGHV3-33P01772 117 aa5.53□□□□□ -1.52
USP4-207ENST00000462673 CFC1BP0CG36 223 aa5.53□□□□□ -1.52
USP4-207ENST00000462673 CFC1P0CG37 223 aa5.53□□□□□ -1.52
USP4-207ENST00000462673 TSPEAR-AS2P59090 65 aa5.53□□□□□ -1.52
USP4-207ENST00000462673 NANOS2P60321 138 aaKnown RBP5.53□□□□□ -1.52
USP4-207ENST00000462673 GAGE2BQ13066 116 aa5.53□□□□□ -1.52
USP4-207ENST00000462673 ZNF876PQ49A33 203 aa5.53□□□□□ -1.52
USP4-207ENST00000462673 GAGE2EQ4V326 116 aa5.53□□□□□ -1.52
USP4-207ENST00000462673 PIK3CD-AS1Q5SR53 167 aa5.53□□□□□ -1.52
USP4-207ENST00000462673 CASC10Q5T4H9 136 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms