RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 NACAE9PAV3 2078 aa10.37□□□□□ -0.75
LIG1-202ENST00000427526 AKAP9Q99996 3911 aa10.37□□□□□ -0.75
LIG1-202ENST00000427526 A0A0B4J2C4 111 aa10.37□□□□□ -0.75
LIG1-202ENST00000427526 CHCHD7Q9BUK0 85 aa10.37□□□□□ -0.75
LIG1-202ENST00000427526 C11orf72Q8NBR9 251 aa10.36□□□□□ -0.75
LIG1-202ENST00000427526 C4orf3Q8WVX3 66 aa10.36□□□□□ -0.75
LIG1-202ENST00000427526 C5orf47Q569G3 176 aa10.36□□□□□ -0.75
LIG1-202ENST00000427526 LITAFQ99732 161 aa10.36□□□□□ -0.75
LIG1-202ENST00000427526 ZNF415Q09FC8 603 aa10.36□□□□□ -0.75
LIG1-202ENST00000427526 CARD19Q96LW7 228 aa10.36□□□□□ -0.75
LIG1-202ENST00000427526 SMR3AQ99954 134 aa10.36□□□□□ -0.75
LIG1-202ENST00000427526 LINC00467Q9BRT7 94 aa10.36□□□□□ -0.75
LIG1-202ENST00000427526 TIMM21Q9BVV7 248 aa10.36□□□□□ -0.75
LIG1-202ENST00000427526 PEMTQ9UBM1 199 aa10.36□□□□□ -0.75
LIG1-202ENST00000427526 TEN1Q86WV5 123 aa10.35□□□□□ -0.75
LIG1-202ENST00000427526 MAP6D1Q9H9H5 199 aa10.35□□□□□ -0.75
LIG1-202ENST00000427526 UBE2D4Q9Y2X8 147 aa10.35□□□□□ -0.75
LIG1-202ENST00000427526 TRAV8-3A0A0A6YYJ7 113 aa10.34□□□□□ -0.75
LIG1-202ENST00000427526 SCGB1C2P0DMR2 95 aa10.34□□□□□ -0.75
LIG1-202ENST00000427526 SETD2Q9BYW2 2564 aaPredicted RBP10.34□□□□□ -0.75
LIG1-202ENST00000427526 IGHV1-58A0A0C4DH39 117 aa10.34□□□□□ -0.75
LIG1-202ENST00000427526 A0A1W2PRX2 142 aa10.34□□□□□ -0.75
LIG1-202ENST00000427526 BEAN1Q3B7T3 259 aa10.34□□□□□ -0.75
LIG1-202ENST00000427526 RNASE13Q5GAN3 156 aaKnown RBP10.34□□□□□ -0.75
LIG1-202ENST00000427526 TINCRA0A1B0GVN0 87 aa10.33□□□□□ -0.75
LIG1-202ENST00000427526 PPDPFLQ8WWR9 84 aa10.33□□□□□ -0.75
LIG1-202ENST00000427526 SPANXA1Q9NS26 97 aa10.33□□□□□ -0.75
LIG1-202ENST00000427526 CSDC2Q9Y534 153 aaKnown RBP10.33□□□□□ -0.75
LIG1-202ENST00000427526 NOTCH2Q04721 2471 aa10.33□□□□□ -0.76
LIG1-202ENST00000427526 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.33□□□□□ -0.76
LIG1-202ENST00000427526 ADARB2-AS1A8MUL3 147 aa10.33□□□□□ -0.76
LIG1-202ENST00000427526 IGHV3-53P01767 116 aa10.33□□□□□ -0.76
LIG1-202ENST00000427526 DEFB114Q30KQ6 69 aa10.33□□□□□ -0.76
LIG1-202ENST00000427526 LINC01587Q99440 93 aa10.33□□□□□ -0.76
LIG1-202ENST00000427526 NDUFV3P56181 108 aaKnown RBP10.32□□□□□ -0.76
LIG1-202ENST00000427526 VSIG2Q96IQ7 327 aa10.32□□□□□ -0.76
LIG1-202ENST00000427526 DNAJC30Q96LL9 226 aa10.32□□□□□ -0.76
LIG1-202ENST00000427526 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.31□□□□□ -0.76
LIG1-202ENST00000427526 IGKV2-29A2NJV5 120 aaPredicted RBP10.31□□□□□ -0.76
LIG1-202ENST00000427526 ADAMTSL4-AS1Q5T5F5 129 aa10.31□□□□□ -0.76
LIG1-202ENST00000427526 RS1O15537 224 aa10.31□□□□□ -0.76
LIG1-202ENST00000427526 TRAV25A0A0B4J276 109 aa10.3□□□□□ -0.76
LIG1-202ENST00000427526 LINC01006Q8NI28 216 aa10.3□□□□□ -0.76
LIG1-202ENST00000427526 SPANXDQ9BXN6 97 aa10.3□□□□□ -0.76
LIG1-202ENST00000427526 SPANXCQ9NY87 97 aa10.3□□□□□ -0.76
LIG1-202ENST00000427526 NDUFA12Q9UI09 145 aa10.3□□□□□ -0.76
LIG1-202ENST00000427526 ANKRD29Q8N6D5 301 aa10.3□□□□□ -0.76
LIG1-202ENST00000427526 DYNLRB2Q8TF09 96 aa10.3□□□□□ -0.76
LIG1-202ENST00000427526 ANK3Q12955 4377 aaKnown RBP10.3□□□□□ -0.76
LIG1-202ENST00000427526 A8MZ25 164 aa10.29□□□□□ -0.76
LIG1-202ENST00000427526 H7C2G1 150 aa10.29□□□□□ -0.76
LIG1-202ENST00000427526 INSP01308 110 aa10.29□□□□□ -0.76
LIG1-202ENST00000427526 IGHV3-38A0A0C4DH36 116 aa10.29□□□□□ -0.76
LIG1-202ENST00000427526 SLC25A20O43772 301 aa10.29□□□□□ -0.76
LIG1-202ENST00000427526 CITED2Q99967 270 aaPredicted RBP10.29□□□□□ -0.76
LIG1-202ENST00000427526 RNASE1P07998 156 aaKnown RBP10.28□□□□□ -0.76
LIG1-202ENST00000427526 TRBV30A0A0K0K1B3 111 aa10.28□□□□□ -0.76
LIG1-202ENST00000427526 C9JAW5 83 aa10.28□□□□□ -0.76
LIG1-202ENST00000427526 WNK1Q9H4A3 2382 aa10.28□□□□□ -0.76
LIG1-202ENST00000427526 PRSS2P07478 247 aa10.27□□□□□ -0.77
LIG1-202ENST00000427526 IGLV5-45A0A087WSX0 123 aa10.27□□□□□ -0.77
LIG1-202ENST00000427526 MIAQ16674 131 aa10.27□□□□□ -0.77
LIG1-202ENST00000427526 ODF3L2Q3SX64 289 aa10.27□□□□□ -0.77
LIG1-202ENST00000427526 LINC01600Q96MT4 127 aa10.27□□□□□ -0.77
LIG1-202ENST00000427526 CCL24O00175 119 aa10.26□□□□□ -0.77
LIG1-202ENST00000427526 HIVEP2P31629 2446 aa10.26□□□□□ -0.77
LIG1-202ENST00000427526 WIPF1O43516 503 aa10.26□□□□□ -0.77
LIG1-202ENST00000427526 TIRAPP58753 221 aa10.26□□□□□ -0.77
LIG1-202ENST00000427526 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.26□□□□□ -0.77
LIG1-202ENST00000427526 IL17DQ8TAD2 202 aa10.26□□□□□ -0.77
LIG1-202ENST00000427526 XCL2Q9UBD3 114 aa10.26□□□□□ -0.77
LIG1-202ENST00000427526 CDKN2A-AS1Q9UH64 79 aa10.26□□□□□ -0.77
LIG1-202ENST00000427526 TRIAP1O43715 76 aa10.25□□□□□ -0.77
LIG1-202ENST00000427526 Q1RN00 199 aa10.25□□□□□ -0.77
LIG1-202ENST00000427526 GAGE2BQ13066 116 aa10.25□□□□□ -0.77
LIG1-202ENST00000427526 ATXN8Q156A1 80 aa10.25□□□□□ -0.77
LIG1-202ENST00000427526 GAGE2EQ4V326 116 aa10.25□□□□□ -0.77
LIG1-202ENST00000427526 C1orf158Q8N1D5 194 aa10.25□□□□□ -0.77
LIG1-202ENST00000427526 GAGE2DQ9UEU5 116 aa10.25□□□□□ -0.77
LIG1-202ENST00000427526 IFITM1P13164 125 aa10.25□□□□□ -0.77
LIG1-202ENST00000427526 MEIG1Q5JSS6 88 aa10.25□□□□□ -0.77
LIG1-202ENST00000427526 C16orf95Q9H693 158 aa10.25□□□□□ -0.77
LIG1-202ENST00000427526 TIMM17BO60830 172 aa10.24□□□□□ -0.77
LIG1-202ENST00000427526 LY6G6DO95868 133 aa10.24□□□□□ -0.77
LIG1-202ENST00000427526 HILS1P60008 231 aa10.24□□□□□ -0.77
LIG1-202ENST00000427526 LINC01620Q4KN68 170 aa10.24□□□□□ -0.77
LIG1-202ENST00000427526 TTC32Q5I0X7 151 aa10.24□□□□□ -0.77
LIG1-202ENST00000427526 TMEM101Q96IK0 257 aa10.24□□□□□ -0.77
LIG1-202ENST00000427526 IGHV3OR16-12A0A075B7B8 117 aa10.23□□□□□ -0.77
LIG1-202ENST00000427526 NIPBLQ6KC79 2804 aaeCLIP10.23□□□□□ -0.77
LIG1-202ENST00000427526 COX6A2Q02221 97 aa10.23□□□□□ -0.77
LIG1-202ENST00000427526 SMIM9A6NGZ8 99 aa10.23□□□□□ -0.77
LIG1-202ENST00000427526 OTOGQ6ZRI0 2925 aa10.22□□□□□ -0.77
LIG1-202ENST00000427526 NDUFA1O15239 70 aa10.22□□□□□ -0.77
LIG1-202ENST00000427526 STHQ8IWL8 128 aa10.22□□□□□ -0.77
LIG1-202ENST00000427526 ICOSQ9Y6W8 199 aa10.22□□□□□ -0.77
LIG1-202ENST00000427526 TRAV4A0A0B4J268 109 aa10.21□□□□□ -0.77
LIG1-202ENST00000427526 NPC2P61916 151 aa10.21□□□□□ -0.77
LIG1-202ENST00000427526 FAM19A3Q7Z5A8 133 aa10.21□□□□□ -0.77
LIG1-202ENST00000427526 IGLV5-39A0A0G2JS06 123 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 161.3 ms