RNA–Protein interactions for RNA: ENST00000399084.5

HLA-DQB1-204, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQB1, Length 1,734 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-204ENST00000399084 KRTAP10-3P60369 221 aa12.65□□□□□ -0.38
HLA-DQB1-204ENST00000399084 HERVK_113P63121 156 aa12.65□□□□□ -0.38
HLA-DQB1-204ENST00000399084 RPL24P83731 157 aaKnown RBP12.65□□□□□ -0.38
HLA-DQB1-204ENST00000399084 OCIAD2Q56VL3 154 aa12.65□□□□□ -0.38
HLA-DQB1-204ENST00000399084 KIR2DL5BQ8NHK3 375 aa12.65□□□□□ -0.38
HLA-DQB1-204ENST00000399084 VSIG2Q96IQ7 327 aa12.65□□□□□ -0.38
HLA-DQB1-204ENST00000399084 C2CD3Q4AC94 2353 aa12.65□□□□□ -0.39
HLA-DQB1-204ENST00000399084 IGHV3-38A0A0C4DH36 116 aa12.64□□□□□ -0.39
HLA-DQB1-204ENST00000399084 F8W1H4 67 aa12.64□□□□□ -0.39
HLA-DQB1-204ENST00000399084 CEMP1Q6PRD7 247 aaPredicted RBP12.64□□□□□ -0.39
HLA-DQB1-204ENST00000399084 NAA38Q9BRA0 125 aaKnown RBP12.64□□□□□ -0.39
HLA-DQB1-204ENST00000399084 Q6ZUT4 128 aa12.63□□□□□ -0.39
HLA-DQB1-204ENST00000399084 SBSPONQ8IVN8 264 aa12.62□□□□□ -0.39
HLA-DQB1-204ENST00000399084 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.62□□□□□ -0.39
HLA-DQB1-204ENST00000399084 TIMM17BO60830 172 aa12.62□□□□□ -0.39
HLA-DQB1-204ENST00000399084 RNF183Q96D59 192 aa12.62□□□□□ -0.39
HLA-DQB1-204ENST00000399084 WFDC10AQ9H1F0 79 aa12.62□□□□□ -0.39
HLA-DQB1-204ENST00000399084 NF1P21359 2839 aa12.62□□□□□ -0.39
HLA-DQB1-204ENST00000399084 A0A0J9YXY3 114 aa12.61□□□□□ -0.39
HLA-DQB1-204ENST00000399084 GAGE7O76087 117 aa12.61□□□□□ -0.39
HLA-DQB1-204ENST00000399084 GAGE12FP0CL80 117 aa12.61□□□□□ -0.39
HLA-DQB1-204ENST00000399084 GAGE12GP0CL81 117 aa12.61□□□□□ -0.39
HLA-DQB1-204ENST00000399084 GAGE12IP0CL82 117 aa12.61□□□□□ -0.39
HLA-DQB1-204ENST00000399084 TMEM243Q9BU79 118 aa12.61□□□□□ -0.39
HLA-DQB1-204ENST00000399084 PGPEP1Q9NXJ5 209 aa12.61□□□□□ -0.39
HLA-DQB1-204ENST00000399084 TRGV4A0A0C4DH28 118 aa12.6□□□□□ -0.39
HLA-DQB1-204ENST00000399084 ZFAND6Q6FIF0 208 aa12.6□□□□□ -0.39
HLA-DQB1-204ENST00000399084 LINC00612Q8N6U2 182 aa12.6□□□□□ -0.39
HLA-DQB1-204ENST00000399084 TMEM101Q96IK0 257 aa12.6□□□□□ -0.39
HLA-DQB1-204ENST00000399084 INAFM1C9JVW0 142 aa12.59□□□□□ -0.39
HLA-DQB1-204ENST00000399084 NTM-AS1Q6ZSK4 140 aa12.59□□□□□ -0.39
HLA-DQB1-204ENST00000399084 PRO1854Q9UHT4 67 aa12.59□□□□□ -0.39
HLA-DQB1-204ENST00000399084 NDUFA12Q9UI09 145 aa12.59□□□□□ -0.39
HLA-DQB1-204ENST00000399084 A0A0B4J2C4 111 aa12.59□□□□□ -0.39
HLA-DQB1-204ENST00000399084 GAGE12JA6NER3 117 aa12.59□□□□□ -0.39
HLA-DQB1-204ENST00000399084 GAGE4Q13068 117 aa12.59□□□□□ -0.39
HLA-DQB1-204ENST00000399084 GAGE5Q13069 117 aa12.59□□□□□ -0.39
HLA-DQB1-204ENST00000399084 GAGE13Q4V321 117 aa12.59□□□□□ -0.39
HLA-DQB1-204ENST00000399084 C10orf126Q8N4M7 172 aa12.59□□□□□ -0.39
HLA-DQB1-204ENST00000399084 SPANXDQ9BXN6 97 aa12.59□□□□□ -0.39
HLA-DQB1-204ENST00000399084 SPANXCQ9NY87 97 aa12.59□□□□□ -0.39
HLA-DQB1-204ENST00000399084 UBE2L6O14933 153 aa12.58□□□□□ -0.4
HLA-DQB1-204ENST00000399084 CRLF1O75462 422 aa12.58□□□□□ -0.4
HLA-DQB1-204ENST00000399084 CFC1BP0CG36 223 aa12.58□□□□□ -0.4
HLA-DQB1-204ENST00000399084 CFC1P0CG37 223 aa12.58□□□□□ -0.4
HLA-DQB1-204ENST00000399084 CDC42SE2Q9NRR3 84 aa12.58□□□□□ -0.4
HLA-DQB1-204ENST00000399084 MTORP42345 2549 aa12.57□□□□□ -0.4
HLA-DQB1-204ENST00000399084 TRBV20-1A0A075B6N2 111 aa12.57□□□□□ -0.4
HLA-DQB1-204ENST00000399084 FHL2Q14192 279 aa12.57□□□□□ -0.4
HLA-DQB1-204ENST00000399084 AKAP9Q99996 3911 aa12.57□□□□□ -0.4
HLA-DQB1-204ENST00000399084 IFITM1P13164 125 aa12.57□□□□□ -0.4
HLA-DQB1-204ENST00000399084 RBX1P62877 108 aa12.57□□□□□ -0.4
HLA-DQB1-204ENST00000399084 LINC00242Q5T6M2 205 aa12.57□□□□□ -0.4
HLA-DQB1-204ENST00000399084 ANK3Q12955 4377 aaKnown RBP12.56□□□□□ -0.4
HLA-DQB1-204ENST00000399084 IGHV3-64A0A075B6Q5 118 aa12.56□□□□□ -0.4
HLA-DQB1-204ENST00000399084 IGLV5-39A0A0G2JS06 123 aa12.56□□□□□ -0.4
HLA-DQB1-204ENST00000399084 NDUFA1O15239 70 aa12.56□□□□□ -0.4
HLA-DQB1-204ENST00000399084 RNASE13Q5GAN3 156 aaKnown RBP12.56□□□□□ -0.4
HLA-DQB1-204ENST00000399084 CDKN2A-AS1Q9UH64 79 aa12.56□□□□□ -0.4
HLA-DQB1-204ENST00000399084 TRAV8-3A0A0A6YYJ7 113 aa12.55□□□□□ -0.4
HLA-DQB1-204ENST00000399084 APOMO95445 188 aa12.55□□□□□ -0.4
HLA-DQB1-204ENST00000399084 TSPAN13O95857 204 aa12.55□□□□□ -0.4
HLA-DQB1-204ENST00000399084 CIRBPQ14011 172 aaKnown RBP12.55□□□□□ -0.4
HLA-DQB1-204ENST00000399084 COPS9Q8WXC6 57 aa12.55□□□□□ -0.4
HLA-DQB1-204ENST00000399084 CITED1Q99966 193 aa12.55□□□□□ -0.4
HLA-DQB1-204ENST00000399084 LINC00694P0DN24 101 aa12.54□□□□□ -0.4
HLA-DQB1-204ENST00000399084 OTOGQ6ZRI0 2925 aa12.54□□□□□ -0.4
HLA-DQB1-204ENST00000399084 A4D1N5 150 aa12.54□□□□□ -0.4
HLA-DQB1-204ENST00000399084 LYRM9A8MSI8 78 aa12.54□□□□□ -0.4
HLA-DQB1-204ENST00000399084 SPINK8P0C7L1 97 aa12.54□□□□□ -0.4
HLA-DQB1-204ENST00000399084 APOC4P55056 127 aa12.54□□□□□ -0.4
HLA-DQB1-204ENST00000399084 MUSTN1Q8IVN3 82 aa12.54□□□□□ -0.4
HLA-DQB1-204ENST00000399084 LITAFQ99732 161 aa12.54□□□□□ -0.4
HLA-DQB1-204ENST00000399084 TRBV6-8A0A0A6YYG3 113 aa12.52□□□□□ -0.41
HLA-DQB1-204ENST00000399084 MIAQ16674 131 aa12.52□□□□□ -0.41
HLA-DQB1-204ENST00000399084 PPDPFQ9H3Y8 114 aa12.52□□□□□ -0.41
HLA-DQB1-204ENST00000399084 WIPF1O43516 503 aa12.51□□□□□ -0.41
HLA-DQB1-204ENST00000399084 WFDC9Q8NEX5 89 aa12.51□□□□□ -0.41
HLA-DQB1-204ENST00000399084 H3BMG7 143 aa12.51□□□□□ -0.41
HLA-DQB1-204ENST00000399084 HERV-K104P63124 156 aa12.51□□□□□ -0.41
HLA-DQB1-204ENST00000399084 ERG28Q9UKR5 140 aa12.51□□□□□ -0.41
HLA-DQB1-204ENST00000399084 X6R8D5 127 aa12.51□□□□□ -0.41
HLA-DQB1-204ENST00000399084 F8P00451 2351 aa12.5□□□□□ -0.41
HLA-DQB1-204ENST00000399084 G3V4G9 280 aa12.5□□□□□ -0.41
HLA-DQB1-204ENST00000399084 J3QR89 54 aa12.5□□□□□ -0.41
HLA-DQB1-204ENST00000399084 LOC107984156A0A0G2JMH3 177 aa12.49□□□□□ -0.41
HLA-DQB1-204ENST00000399084 IGHV3-33P01772 117 aa12.49□□□□□ -0.41
HLA-DQB1-204ENST00000399084 ARL17AQ8IVW1 177 aa12.49□□□□□ -0.41
HLA-DQB1-204ENST00000399084 PRO0255Q9UI72 69 aa12.49□□□□□ -0.41
HLA-DQB1-204ENST00000399084 PRSS2P07478 247 aa12.48□□□□□ -0.41
HLA-DQB1-204ENST00000399084 COX6A2Q02221 97 aa12.48□□□□□ -0.41
HLA-DQB1-204ENST00000399084 TRAV13-1A0A0B4J241 112 aa12.48□□□□□ -0.41
HLA-DQB1-204ENST00000399084 SMIM1B2RUZ4 78 aa12.48□□□□□ -0.41
HLA-DQB1-204ENST00000399084 PRO0461Q9UI25 63 aa12.48□□□□□ -0.41
HLA-DQB1-204ENST00000399084 SETD2Q9BYW2 2564 aaPredicted RBP12.47□□□□□ -0.41
HLA-DQB1-204ENST00000399084 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.47□□□□□ -0.41
HLA-DQB1-204ENST00000399084 DEFB130BP0DP73 79 aa12.46□□□□□ -0.41
HLA-DQB1-204ENST00000399084 DEFB130AP0DP74 79 aa12.46□□□□□ -0.41
HLA-DQB1-204ENST00000399084 LOC100131303A0A0U1RQF7 123 aa12.45□□□□□ -0.42
HLA-DQB1-204ENST00000399084 F5H768 121 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms