RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 SPATA45Q537H7 98 aa14.08□□□□□ -0.16
HDDC3-202ENST00000394272 MRPS36P82909 103 aaKnown RBP14.08□□□□□ -0.16
HDDC3-202ENST00000394272 Q6ZUT4 128 aa14.08□□□□□ -0.16
HDDC3-202ENST00000394272 VCX2Q9H322 139 aa14.08□□□□□ -0.16
HDDC3-202ENST00000394272 DEFB131BA0A096LNP1 70 aa14.07□□□□□ -0.16
HDDC3-202ENST00000394272 UBE2L6O14933 153 aa14.07□□□□□ -0.16
HDDC3-202ENST00000394272 PKIAP61925 76 aa14.07□□□□□ -0.16
HDDC3-202ENST00000394272 SH2D6Q7Z4S9 175 aa14.07□□□□□ -0.16
HDDC3-202ENST00000394272 PRO1933Q9H354 126 aa14.07□□□□□ -0.16
HDDC3-202ENST00000394272 IGLV4-69A0A075B6H9 119 aa14.06□□□□□ -0.16
HDDC3-202ENST00000394272 PLNP26678 52 aa14.06□□□□□ -0.16
HDDC3-202ENST00000394272 SMAGPQ0VAQ4 97 aa14.06□□□□□ -0.16
HDDC3-202ENST00000394272 DGAT2L7PQ6IED9 249 aa14.05□□□□□ -0.16
HDDC3-202ENST00000394272 HSBP1L1C9JCN9 74 aa14.04□□□□□ -0.16
HDDC3-202ENST00000394272 RNASE13Q5GAN3 156 aaKnown RBP14.04□□□□□ -0.16
HDDC3-202ENST00000394272 CHCHD5Q9BSY4 110 aa14.04□□□□□ -0.16
HDDC3-202ENST00000394272 STAB2Q8WWQ8 2551 aa14.04□□□□□ -0.16
HDDC3-202ENST00000394272 TSTD3H0UI37 97 aa14.04□□□□□ -0.16
HDDC3-202ENST00000394272 GAGE6Q13070 117 aa14.04□□□□□ -0.16
HDDC3-202ENST00000394272 STPG4Q8N801 248 aa14.04□□□□□ -0.16
HDDC3-202ENST00000394272 ZNF25P17030 456 aaPredicted RBP14.03□□□□□ -0.16
HDDC3-202ENST00000394272 DEFA6Q01524 100 aa14.03□□□□□ -0.16
HDDC3-202ENST00000394272 AMMECR1LQ6DCA0 310 aa14.03□□□□□ -0.16
HDDC3-202ENST00000394272 CDC42SE2Q9NRR3 84 aa14.03□□□□□ -0.16
HDDC3-202ENST00000394272 TRAV10A0A0B4J240 114 aa14.02□□□□□ -0.16
HDDC3-202ENST00000394272 OR5A1Q8NGJ0 315 aa14.02□□□□□ -0.16
HDDC3-202ENST00000394272 MEGF8Q7Z7M0 2845 aa14.02□□□□□ -0.17
HDDC3-202ENST00000394272 ANKRD39Q53RE8 183 aa14.01□□□□□ -0.17
HDDC3-202ENST00000394272 C11orf86A6NJI1 115 aa14.01□□□□□ -0.17
HDDC3-202ENST00000394272 NHLRC4P0CG21 123 aaPredicted RBP14.01□□□□□ -0.17
HDDC3-202ENST00000394272 NFE4Q86UQ8 179 aa14.01□□□□□ -0.17
HDDC3-202ENST00000394272 IGLC3P0DOY3 106 aa14□□□□□ -0.17
HDDC3-202ENST00000394272 TMEM101Q96IK0 257 aa14□□□□□ -0.17
HDDC3-202ENST00000394272 CTAG1AP78358 180 aa13.99□□□□□ -0.17
HDDC3-202ENST00000394272 LELP1Q5T871 98 aa13.99□□□□□ -0.17
HDDC3-202ENST00000394272 C2orf88Q9BSF0 95 aa13.99□□□□□ -0.17
HDDC3-202ENST00000394272 TIRAPP58753 221 aa13.99□□□□□ -0.17
HDDC3-202ENST00000394272 LYPD5Q6UWN5 251 aa13.99□□□□□ -0.17
HDDC3-202ENST00000394272 IGLV4-60A0A075B6I1 120 aa13.98□□□□□ -0.17
HDDC3-202ENST00000394272 A0A0J9YXV3 536 aa13.98□□□□□ -0.17
HDDC3-202ENST00000394272 A0A1B0GUV1 79 aa13.97□□□□□ -0.17
HDDC3-202ENST00000394272 UBE2D1P51668 147 aa13.97□□□□□ -0.17
HDDC3-202ENST00000394272 CHAC1Q9BUX1 264 aa13.97□□□□□ -0.17
HDDC3-202ENST00000394272 MPV17L2Q567V2 206 aa13.96□□□□□ -0.17
HDDC3-202ENST00000394272 C14orf144Q96I85 54 aa13.96□□□□□ -0.17
HDDC3-202ENST00000394272 TMEM262E9PQX1 116 aa13.95□□□□□ -0.18
HDDC3-202ENST00000394272 TCTAP57738 103 aa13.95□□□□□ -0.18
HDDC3-202ENST00000394272 RBX1P62877 108 aa13.95□□□□□ -0.18
HDDC3-202ENST00000394272 MIEN1Q9BRT3 115 aa13.95□□□□□ -0.18
HDDC3-202ENST00000394272 IGKV2D-26A0A0A0MRZ7 120 aa13.94□□□□□ -0.18
HDDC3-202ENST00000394272 TINCRA0A1B0GVN0 87 aa13.94□□□□□ -0.18
HDDC3-202ENST00000394272 FAM19A3Q7Z5A8 133 aa13.94□□□□□ -0.18
HDDC3-202ENST00000394272 DYNC2H1Q8NCM8 4307 aaKnown RBP13.94□□□□□ -0.18
HDDC3-202ENST00000394272 ZNF22P17026 224 aaPredicted RBP13.93□□□□□ -0.18
HDDC3-202ENST00000394272 DDTP30046 118 aa13.93□□□□□ -0.18
HDDC3-202ENST00000394272 UQCR10Q9UDW1 63 aa13.93□□□□□ -0.18
HDDC3-202ENST00000394272 C15orf53Q8NAA6 179 aa13.93□□□□□ -0.18
HDDC3-202ENST00000394272 COX8AP10176 69 aa13.92□□□□□ -0.18
HDDC3-202ENST00000394272 TMEM170BQ5T4T1 132 aa13.92□□□□□ -0.18
HDDC3-202ENST00000394272 TRAV13-1A0A0B4J241 112 aa13.91□□□□□ -0.18
HDDC3-202ENST00000394272 ESRGQ1W209 222 aa13.91□□□□□ -0.18
HDDC3-202ENST00000394272 LINC00242Q5T6M2 205 aa13.91□□□□□ -0.18
HDDC3-202ENST00000394272 NMUP48645 174 aa13.91□□□□□ -0.18
HDDC3-202ENST00000394272 E9PLD3 99 aa13.9□□□□□ -0.18
HDDC3-202ENST00000394272 Q8N3U1 123 aa13.9□□□□□ -0.18
HDDC3-202ENST00000394272 TP73-AS1Q9UF72 201 aa13.9□□□□□ -0.18
HDDC3-202ENST00000394272 IGLV5-45A0A087WSX0 123 aa13.89□□□□□ -0.19
HDDC3-202ENST00000394272 TRAV8-6A0A0B4J262 113 aa13.89□□□□□ -0.19
HDDC3-202ENST00000394272 TMEM223A0PJW6 202 aa13.89□□□□□ -0.19
HDDC3-202ENST00000394272 SLC25A34Q6PIV7 304 aa13.89□□□□□ -0.19
HDDC3-202ENST00000394272 PCP2Q8IVA1 136 aa13.89□□□□□ -0.19
HDDC3-202ENST00000394272 DNAH7Q8WXX0 4024 aa13.88□□□□□ -0.19
HDDC3-202ENST00000394272 HERVK_113P61574 105 aa13.88□□□□□ -0.19
HDDC3-202ENST00000394272 HERVK_113P63121 156 aa13.88□□□□□ -0.19
HDDC3-202ENST00000394272 SEC11AP67812 179 aa13.88□□□□□ -0.19
HDDC3-202ENST00000394272 COX6A2Q02221 97 aa13.88□□□□□ -0.19
HDDC3-202ENST00000394272 GEMIN7Q9H840 131 aaKnown RBP13.88□□□□□ -0.19
HDDC3-202ENST00000394272 BOD1L2Q8IYS8 172 aa13.87□□□□□ -0.19
HDDC3-202ENST00000394272 IGLL5B9A064 214 aa13.86□□□□□ -0.19
HDDC3-202ENST00000394272 DLEU1O43261 78 aa13.86□□□□□ -0.19
HDDC3-202ENST00000394272 LINC00469Q8N7U9 141 aa13.86□□□□□ -0.19
HDDC3-202ENST00000394272 TTTY13Q9BZ97 58 aa13.86□□□□□ -0.19
HDDC3-202ENST00000394272 CDKN2A-AS1Q9UH64 79 aa13.86□□□□□ -0.19
HDDC3-202ENST00000394272 IGKV3OR2-268A0A0C4DH90 116 aa13.85□□□□□ -0.19
HDDC3-202ENST00000394272 WFDC10BQ8IUB3 73 aa13.85□□□□□ -0.19
HDDC3-202ENST00000394272 CSMD3Q7Z407 3707 aa13.85□□□□□ -0.19
HDDC3-202ENST00000394272 LINC00959A0A1B0GUT2 108 aa13.84□□□□□ -0.19
HDDC3-202ENST00000394272 ANGP03950 147 aaKnown RBP13.84□□□□□ -0.19
HDDC3-202ENST00000394272 LINC00269Q8N2A0 174 aa13.84□□□□□ -0.19
HDDC3-202ENST00000394272 HNRNPA3P51991 378 aaKnown RBP13.82□□□□□ -0.2
HDDC3-202ENST00000394272 CLPSL2Q6UWE3 100 aa13.82□□□□□ -0.2
HDDC3-202ENST00000394272 MAPKAPK5-AS1Q8N8E1 139 aa13.82□□□□□ -0.2
HDDC3-202ENST00000394272 PLECQ15149 4684 aaKnown RBP13.82□□□□□ -0.2
HDDC3-202ENST00000394272 H3BRM9 83 aa13.81□□□□□ -0.2
HDDC3-202ENST00000394272 TSPEAR-AS2P59090 65 aa13.81□□□□□ -0.2
HDDC3-202ENST00000394272 REG3AQ06141 175 aa13.81□□□□□ -0.2
HDDC3-202ENST00000394272 FBN3Q75N90 2809 aa13.8□□□□□ -0.2
HDDC3-202ENST00000394272 IGHV1-58A0A0C4DH39 117 aa13.8□□□□□ -0.2
HDDC3-202ENST00000394272 LEPROTO15243 131 aa13.8□□□□□ -0.2
HDDC3-202ENST00000394272 C2orf91Q6ZV80 131 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms