RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 SRRM2Q9UQ35 2752 aaKnown RBP10.89□□□□□ -0.67
HMGN4-201ENST00000377575 LINC00862A6NCI5 91 aa10.89□□□□□ -0.67
HMGN4-201ENST00000377575 F8W036 122 aa10.89□□□□□ -0.67
HMGN4-201ENST00000377575 CNBPP62633 177 aaKnown RBP10.89□□□□□ -0.67
HMGN4-201ENST00000377575 HBBP68871 147 aa10.89□□□□□ -0.67
HMGN4-201ENST00000377575 CFAP161Q6P656 301 aa10.89□□□□□ -0.67
HMGN4-201ENST00000377575 C9orf163Q8N9P6 203 aa10.89□□□□□ -0.67
HMGN4-201ENST00000377575 CHCHD10Q8WYQ3 142 aaPredicted RBP10.89□□□□□ -0.67
HMGN4-201ENST00000377575 KIR2DL4Q99706 377 aa10.89□□□□□ -0.67
HMGN4-201ENST00000377575 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.88□□□□□ -0.67
HMGN4-201ENST00000377575 SMAGPQ0VAQ4 97 aa10.88□□□□□ -0.67
HMGN4-201ENST00000377575 MRPL54Q6P161 138 aaKnown RBP10.88□□□□□ -0.67
HMGN4-201ENST00000377575 MRPL52Q86TS9 123 aaKnown RBP10.88□□□□□ -0.67
HMGN4-201ENST00000377575 PNRC1Q12796 327 aaPredicted RBP10.87□□□□□ -0.67
HMGN4-201ENST00000377575 CIRBP-AS1Q8TBR5 109 aa10.87□□□□□ -0.67
HMGN4-201ENST00000377575 CKS2P33552 79 aa10.86□□□□□ -0.67
HMGN4-201ENST00000377575 LCE2CQ5TA81 110 aa10.86□□□□□ -0.67
HMGN4-201ENST00000377575 ATP5L2Q7Z4Y8 100 aa10.86□□□□□ -0.67
HMGN4-201ENST00000377575 C20orf78Q9BR46 151 aa10.86□□□□□ -0.67
HMGN4-201ENST00000377575 A0A1B0GXF2 115 aa10.85□□□□□ -0.67
HMGN4-201ENST00000377575 TCAPO15273 167 aa10.85□□□□□ -0.67
HMGN4-201ENST00000377575 C15orf56Q8N910 161 aa10.85□□□□□ -0.67
HMGN4-201ENST00000377575 TRBV24-1A0A075B6N3 115 aa10.84□□□□□ -0.67
HMGN4-201ENST00000377575 IGHV3-64A0A075B6Q5 118 aa10.84□□□□□ -0.67
HMGN4-201ENST00000377575 LINC00959A0A1B0GUT2 108 aa10.84□□□□□ -0.67
HMGN4-201ENST00000377575 RPL32P62910 135 aaKnown RBP10.84□□□□□ -0.67
HMGN4-201ENST00000377575 SS18Q15532 418 aa10.84□□□□□ -0.67
HMGN4-201ENST00000377575 ZNF664Q8N3J9 261 aa10.84□□□□□ -0.67
HMGN4-201ENST00000377575 TMEM18Q96B42 140 aa10.84□□□□□ -0.67
HMGN4-201ENST00000377575 CDC42SE2Q9NRR3 84 aa10.84□□□□□ -0.67
HMGN4-201ENST00000377575 D6R8Y8 96 aa10.83□□□□□ -0.68
HMGN4-201ENST00000377575 TNFRSF6BO95407 300 aa10.83□□□□□ -0.68
HMGN4-201ENST00000377575 PPBPP02775 128 aa10.83□□□□□ -0.68
HMGN4-201ENST00000377575 XCL1P47992 114 aa10.83□□□□□ -0.68
HMGN4-201ENST00000377575 FOXI1Q12951 378 aa10.83□□□□□ -0.68
HMGN4-201ENST00000377575 CLLU1Q5K131 121 aa10.83□□□□□ -0.68
HMGN4-201ENST00000377575 ANAPC16Q96DE5 110 aa10.83□□□□□ -0.68
HMGN4-201ENST00000377575 CSDC2Q9Y534 153 aaKnown RBP10.83□□□□□ -0.68
HMGN4-201ENST00000377575 PHOX2AO14813 284 aa10.82□□□□□ -0.68
HMGN4-201ENST00000377575 CCL25O15444 150 aa10.82□□□□□ -0.68
HMGN4-201ENST00000377575 MT-ND4LP03901 98 aa10.82□□□□□ -0.68
HMGN4-201ENST00000377575 GVQW2A0A096LPI5 108 aaPredicted RBP10.81□□□□□ -0.68
HMGN4-201ENST00000377575 HIGD2BQ4VC39 106 aa10.81□□□□□ -0.68
HMGN4-201ENST00000377575 SDIM1Q6ZPB5 146 aa10.81□□□□□ -0.68
HMGN4-201ENST00000377575 SMIM2Q9BVW6 85 aa10.81□□□□□ -0.68
HMGN4-201ENST00000377575 UBE2D4Q9Y2X8 147 aa10.81□□□□□ -0.68
HMGN4-201ENST00000377575 FLG2Q5D862 2391 aaPredicted RBP10.81□□□□□ -0.68
HMGN4-201ENST00000377575 SLPIP03973 132 aa10.8□□□□□ -0.68
HMGN4-201ENST00000377575 ORMDL3Q8N138 153 aa10.8□□□□□ -0.68
HMGN4-201ENST00000377575 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.8□□□□□ -0.68
HMGN4-201ENST00000377575 MYCBP2O75592 4640 aa10.79□□□□□ -0.68
HMGN4-201ENST00000377575 IGHV1-58A0A0C4DH39 117 aa10.79□□□□□ -0.68
HMGN4-201ENST00000377575 NPYP01303 97 aa10.79□□□□□ -0.68
HMGN4-201ENST00000377575 CD164L2Q6UWJ8 174 aa10.79□□□□□ -0.68
HMGN4-201ENST00000377575 TIMM21Q9BVV7 248 aa10.79□□□□□ -0.68
HMGN4-201ENST00000377575 DMBT1Q9UGM3 2413 aaPredicted RBP10.79□□□□□ -0.68
HMGN4-201ENST00000377575 C1orf196B1AJZ1 125 aa10.78□□□□□ -0.68
HMGN4-201ENST00000377575 CIRBPQ14011 172 aaKnown RBP10.77□□□□□ -0.69
HMGN4-201ENST00000377575 UQCC3Q6UW78 93 aa10.77□□□□□ -0.69
HMGN4-201ENST00000377575 PANO1I0J062 215 aa10.76□□□□□ -0.69
HMGN4-201ENST00000377575 RNASE13Q5GAN3 156 aaKnown RBP10.76□□□□□ -0.69
HMGN4-201ENST00000377575 TMEM136Q6ZRR5 245 aa10.76□□□□□ -0.69
HMGN4-201ENST00000377575 Q6ZUT4 128 aa10.76□□□□□ -0.69
HMGN4-201ENST00000377575 PRELID3AQ96N28 172 aa10.76□□□□□ -0.69
HMGN4-201ENST00000377575 SPANXA1Q9NS26 97 aa10.76□□□□□ -0.69
HMGN4-201ENST00000377575 PKIGQ9Y2B9 76 aa10.76□□□□□ -0.69
HMGN4-201ENST00000377575 LAMTOR2Q9Y2Q5 125 aa10.76□□□□□ -0.69
HMGN4-201ENST00000377575 RPL37AP61513 92 aaKnown RBP10.75□□□□□ -0.69
HMGN4-201ENST00000377575 TRAV13-1A0A0B4J241 112 aa10.74□□□□□ -0.69
HMGN4-201ENST00000377575 ZNF561-AS1K7EIQ3 104 aa10.74□□□□□ -0.69
HMGN4-201ENST00000377575 COX7A2LO14548 114 aa10.74□□□□□ -0.69
HMGN4-201ENST00000377575 RAB5AP20339 215 aa10.74□□□□□ -0.69
HMGN4-201ENST00000377575 MALP21145 153 aa10.74□□□□□ -0.69
HMGN4-201ENST00000377575 RPL39P62891 51 aaKnown RBP10.74□□□□□ -0.69
HMGN4-201ENST00000377575 SPACA4Q8TDM5 124 aa10.74□□□□□ -0.69
HMGN4-201ENST00000377575 DPH3Q96FX2 82 aa10.74□□□□□ -0.69
HMGN4-201ENST00000377575 CHTF8P0CG12 524 aa10.73□□□□□ -0.69
HMGN4-201ENST00000377575 IFITM2Q01629 132 aa10.73□□□□□ -0.69
HMGN4-201ENST00000377575 COX6A2Q02221 97 aa10.73□□□□□ -0.69
HMGN4-201ENST00000377575 CARD19Q96LW7 228 aa10.73□□□□□ -0.69
HMGN4-201ENST00000377575 MAP1LC3AQ9H492 121 aa10.73□□□□□ -0.69
HMGN4-201ENST00000377575 KRTAP10-4P60372 401 aaPredicted RBP10.72□□□□□ -0.69
HMGN4-201ENST00000377575 IMMP2LQ96T52 175 aa10.72□□□□□ -0.69
HMGN4-201ENST00000377575 TMEM218A2RU14 115 aa10.71□□□□□ -0.69
HMGN4-201ENST00000377575 ADCYAP1P18509 176 aa10.71□□□□□ -0.69
HMGN4-201ENST00000377575 MRPS36P82909 103 aaKnown RBP10.71□□□□□ -0.69
HMGN4-201ENST00000377575 A0A087WYN8 130 aa10.7□□□□□ -0.7
HMGN4-201ENST00000377575 PRSS47A8MTI9 375 aa10.7□□□□□ -0.7
HMGN4-201ENST00000377575 APOMO95445 188 aa10.7□□□□□ -0.7
HMGN4-201ENST00000377575 IFI27P40305 119 aaPredicted RBP10.7□□□□□ -0.7
HMGN4-201ENST00000377575 PRSS3P2Q8NHM4 247 aa10.7□□□□□ -0.7
HMGN4-201ENST00000377575 LINC00526Q96FQ7 95 aa10.7□□□□□ -0.7
HMGN4-201ENST00000377575 IGKV2-24A0A0C4DH68 120 aa10.69□□□□□ -0.7
HMGN4-201ENST00000377575 SYCNQ0VAF6 134 aa10.69□□□□□ -0.7
HMGN4-201ENST00000377575 MAJINQ3KP22 176 aa10.69□□□□□ -0.7
HMGN4-201ENST00000377575 CTDSP1Q9GZU7 261 aa10.69□□□□□ -0.7
HMGN4-201ENST00000377575 LINC00474Q9P2X8 69 aa10.69□□□□□ -0.7
HMGN4-201ENST00000377575 LOC389332A0A1B0GUA5 103 aa10.68□□□□□ -0.7
HMGN4-201ENST00000377575 IFITM10A6NMD0 228 aa10.68□□□□□ -0.7
HMGN4-201ENST00000377575 SEC11CQ9BY50 192 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms