RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 SPCS1Q9Y6A9 102 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 A0A0J9YXY3 114 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 H3BMG7 143 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 XAF1Q6GPH4 301 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 ACYP2P14621 99 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 Q6ZSA8 131 aa2.97□□□□□ -1.93
USH2A-202ENST00000366942 C1orf147Q96MC9 270 aaPredicted RBP2.97□□□□□ -1.93
USH2A-202ENST00000366942 UNQ9165/PRO28630Q6UXU0 137 aa2.96□□□□□ -1.94
USH2A-202ENST00000366942 A0A1B0GV72 72 aa2.96□□□□□ -1.94
USH2A-202ENST00000366942 BEAN1Q3B7T3 259 aa2.96□□□□□ -1.94
USH2A-202ENST00000366942 HRCT1Q6UXD1 115 aa2.96□□□□□ -1.94
USH2A-202ENST00000366942 HECTD1Q9ULT8 2610 aa2.96□□□□□ -1.94
USH2A-202ENST00000366942 HSD52Q0P140 79 aa2.96□□□□□ -1.94
USH2A-202ENST00000366942 COX17Q14061 63 aa2.96□□□□□ -1.94
USH2A-202ENST00000366942 NUP214P35658 2090 aaPredicted RBP2.96□□□□□ -1.94
USH2A-202ENST00000366942 IGLV1-50A0A075B6I6 118 aa2.96□□□□□ -1.94
USH2A-202ENST00000366942 DOCK5Q9H7D0 1870 aa2.96□□□□□ -1.94
USH2A-202ENST00000366942 YLPM1P49750 1951 aaKnown RBP2.96□□□□□ -1.94
USH2A-202ENST00000366942 RBBP6Q7Z6E9 1792 aaKnown RBP2.96□□□□□ -1.94
USH2A-202ENST00000366942 CASC10Q5T4H9 136 aa2.96□□□□□ -1.94
USH2A-202ENST00000366942 CEP295Q9C0D2 2601 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 RLFQ13129 1914 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 MYO16Q9Y6X6 1858 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 TMEM131Q92545 1883 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 TEX49A0A1B0GTD5 131 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 ODF3L2Q3SX64 289 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 SPATA45Q537H7 98 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 TM2D3Q9BRN9 247 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 SRP19P09132 144 aaKnown RBP2.95□□□□□ -1.94
USH2A-202ENST00000366942 LYPD5Q6UWN5 251 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 SPANXCQ9NY87 97 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 LAMA4Q16363 1823 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 OBSL1O75147 1896 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 IGLC6P0CF74 106 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 C9orf116Q5BN46 136 aaPredicted RBP2.95□□□□□ -1.94
USH2A-202ENST00000366942 XAGE1AQ9HD64 81 aa2.95□□□□□ -1.94
USH2A-202ENST00000366942 TRAV23DV6A0A075B6W5 121 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 ACYP1P07311 99 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 TSC2P49815 1807 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 MGAMO43451 1857 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 MUC4Q99102 2169 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 PIEZO2Q9H5I5 2752 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 LRRK1Q38SD2 2015 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 BRK1Q8WUW1 75 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 LINC00574Q9H8X3 128 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 TANC1Q9C0D5 1861 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 MRPL55Q7Z7F7 128 aaKnown RBP2.94□□□□□ -1.94
USH2A-202ENST00000366942 C20orf203Q8NBC4 194 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 IGKV2-28A0A075B6P5 120 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 IGKV2D-28P01615 120 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 C3orf22Q8N5N4 141 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 MIR7-3HGQ8N6C7 128 aa2.94□□□□□ -1.94
USH2A-202ENST00000366942 SCN2AQ99250 2005 aa2.93□□□□□ -1.94
USH2A-202ENST00000366942 WISP2O76076 250 aa2.93□□□□□ -1.94
USH2A-202ENST00000366942 OCC1Q8TAD7 63 aa2.93□□□□□ -1.94
USH2A-202ENST00000366942 C11orf52Q96A22 123 aa2.93□□□□□ -1.94
USH2A-202ENST00000366942 TP73-AS1Q9UF72 201 aa2.93□□□□□ -1.94
USH2A-202ENST00000366942 C12orf74Q32Q52 190 aa2.93□□□□□ -1.94
USH2A-202ENST00000366942 Q8NBF4 154 aa2.93□□□□□ -1.94
USH2A-202ENST00000366942 RTBDNQ9BSG5 229 aaPredicted RBP2.93□□□□□ -1.94
USH2A-202ENST00000366942 WFDC10AQ9H1F0 79 aa2.93□□□□□ -1.94
USH2A-202ENST00000366942 SSBP3-AS1Q7Z2R9 100 aa2.93□□□□□ -1.94
USH2A-202ENST00000366942 ZNF503-AS2A6NEH8 195 aa2.93□□□□□ -1.94
USH2A-202ENST00000366942 RNASE13Q5GAN3 156 aaKnown RBP2.93□□□□□ -1.94
USH2A-202ENST00000366942 Q6ZUT4 128 aa2.93□□□□□ -1.94
USH2A-202ENST00000366942 MYH15Q9Y2K3 1946 aa2.93□□□□□ -1.94
USH2A-202ENST00000366942 CYSRT1A8MQ03 144 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 NDUFC2-KCTD14E9PQ53 114 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 DYSFO75923 2080 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 GOLGB1Q14789 3259 aaKnown RBP2.92□□□□□ -1.94
USH2A-202ENST00000366942 TET2Q6N021 2002 aaPredicted RBP2.92□□□□□ -1.94
USH2A-202ENST00000366942 TRAV12-1A0A0B4J245 112 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 OTOFQ9HC10 1997 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 ADAMTS20P59510 1910 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 DMBT1Q9UGM3 2413 aaPredicted RBP2.92□□□□□ -1.94
USH2A-202ENST00000366942 DOCK11Q5JSL3 2073 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 SMR3BP02814 79 aaPredicted RBP2.92□□□□□ -1.94
USH2A-202ENST00000366942 CHTF8P0CG12 524 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 KIAA2026Q5HYC2 2103 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 HIST2H2BDQ6DRA6 164 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 ADAMTSL1Q8N6G6 1762 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 USP34Q70CQ2 3546 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 COL4A3Q01955 1670 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 IGLV5-37A0A075B6J1 123 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 C10orf91Q5T1B1 145 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 CFAP126Q5VTH2 177 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 LINC00173Q6ZV60 143 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 IGLV7-46A0A075B6I9 117 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 TRBV24-1A0A075B6N3 115 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 Q8IZM0 81 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 MDFICQ9P1T7 246 aa2.92□□□□□ -1.94
USH2A-202ENST00000366942 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.91□□□□□ -1.94
USH2A-202ENST00000366942 A0A0J9YXV3 536 aa2.91□□□□□ -1.94
USH2A-202ENST00000366942 TINCRA0A1B0GVN0 87 aa2.91□□□□□ -1.94
USH2A-202ENST00000366942 PDCD11Q14690 1871 aaKnown RBP2.91□□□□□ -1.94
USH2A-202ENST00000366942 MRPL51Q4U2R6 128 aaKnown RBP2.91□□□□□ -1.94
USH2A-202ENST00000366942 HELZ2Q9BYK8 2649 aaKnown RBP2.91□□□□□ -1.94
USH2A-202ENST00000366942 PRO1854Q9UHT4 67 aa2.91□□□□□ -1.94
USH2A-202ENST00000366942 PHF3Q92576 2039 aaKnown RBP2.91□□□□□ -1.94
USH2A-202ENST00000366942 LINC00959A0A1B0GUT2 108 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms