RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 PSMB2P49721 201 aa7.42□□□□□ -1.22
LIMA1-201ENST00000341247 GEMIN7Q9H840 131 aaKnown RBP7.42□□□□□ -1.22
LIMA1-201ENST00000341247 ETDBQ3ZM63 59 aa7.42□□□□□ -1.22
LIMA1-201ENST00000341247 SPATA3Q8NHX4 192 aa7.42□□□□□ -1.22
LIMA1-201ENST00000341247 TRAV13-1A0A0B4J241 112 aa7.42□□□□□ -1.22
LIMA1-201ENST00000341247 A0A0U1RRA0 63 aa7.42□□□□□ -1.22
LIMA1-201ENST00000341247 A4D1N5 150 aa7.42□□□□□ -1.22
LIMA1-201ENST00000341247 IGKV3OR2-268A0A0C4DH90 116 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 CFC1BP0CG36 223 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 CFC1P0CG37 223 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 MUSTN1Q8IVN3 82 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 PF4P02776 101 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 HILS1P60008 231 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 NDUFA11Q86Y39 141 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 PYGO1Q9Y3Y4 419 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 A0A1B0GWB2 263 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 UBE2D1P51668 147 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 KRTAP10-3P60369 221 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 DAND5Q8N907 189 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 TMEM263Q8WUH6 116 aaKnown RBP7.41□□□□□ -1.22
LIMA1-201ENST00000341247 ZNF625Q96I27 306 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-201ENST00000341247 CDKN2A-AS1Q9UH64 79 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 CMYA5Q8N3K9 4069 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 PKD1L1Q8TDX9 2849 aa7.41□□□□□ -1.22
LIMA1-201ENST00000341247 ATRQ13535 2644 aa7.4□□□□□ -1.22
LIMA1-201ENST00000341247 IGLV1-51P01701 117 aa7.4□□□□□ -1.22
LIMA1-201ENST00000341247 SCGB1C2P0DMR2 95 aa7.4□□□□□ -1.22
LIMA1-201ENST00000341247 MRPS36P82909 103 aaKnown RBP7.4□□□□□ -1.22
LIMA1-201ENST00000341247 RPL36AP83881 106 aaKnown RBP7.4□□□□□ -1.22
LIMA1-201ENST00000341247 RPL36ALQ969Q0 106 aaKnown RBP7.4□□□□□ -1.22
LIMA1-201ENST00000341247 NDUFA12Q9UI09 145 aa7.4□□□□□ -1.22
LIMA1-201ENST00000341247 FBN1P35555 2871 aaKnown RBP7.4□□□□□ -1.23
LIMA1-201ENST00000341247 A0A0J9YXY3 114 aa7.4□□□□□ -1.23
LIMA1-201ENST00000341247 K7EQD1 137 aa7.4□□□□□ -1.23
LIMA1-201ENST00000341247 COX6A2Q02221 97 aa7.4□□□□□ -1.23
LIMA1-201ENST00000341247 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.4□□□□□ -1.23
LIMA1-201ENST00000341247 EDA2RQ9HAV5 297 aa7.4□□□□□ -1.23
LIMA1-201ENST00000341247 SPANXA1Q9NS26 97 aa7.4□□□□□ -1.23
LIMA1-201ENST00000341247 LY6G6DO95868 133 aa7.39□□□□□ -1.23
LIMA1-201ENST00000341247 C16orf95Q9H693 158 aa7.39□□□□□ -1.23
LIMA1-201ENST00000341247 DEFB130BP0DP73 79 aa7.39□□□□□ -1.23
LIMA1-201ENST00000341247 DEFB130AP0DP74 79 aa7.39□□□□□ -1.23
LIMA1-201ENST00000341247 Q1RN00 199 aa7.39□□□□□ -1.23
LIMA1-201ENST00000341247 NTM-AS1Q6ZSK4 140 aa7.39□□□□□ -1.23
LIMA1-201ENST00000341247 PIK3CD-AS1Q5SR53 167 aa7.39□□□□□ -1.23
LIMA1-201ENST00000341247 DNAJC30Q96LL9 226 aa7.39□□□□□ -1.23
LIMA1-201ENST00000341247 C19orf73Q9NVV2 129 aa7.39□□□□□ -1.23
LIMA1-201ENST00000341247 ADAMTSL4-AS1Q5T5F5 129 aa7.38□□□□□ -1.23
LIMA1-201ENST00000341247 TRGV4A0A0C4DH28 118 aa7.38□□□□□ -1.23
LIMA1-201ENST00000341247 IGHV1-58A0A0C4DH39 117 aa7.38□□□□□ -1.23
LIMA1-201ENST00000341247 INAFM1C9JVW0 142 aa7.38□□□□□ -1.23
LIMA1-201ENST00000341247 EIF4EBP3O60516 100 aaPredicted RBP7.38□□□□□ -1.23
LIMA1-201ENST00000341247 SPANXB1Q9NS25 103 aaPredicted RBP7.38□□□□□ -1.23
LIMA1-201ENST00000341247 PTH2Q96A98 100 aa7.38□□□□□ -1.23
LIMA1-201ENST00000341247 G3V4G9 280 aa7.37□□□□□ -1.23
LIMA1-201ENST00000341247 INSL3P51460 131 aa7.37□□□□□ -1.23
LIMA1-201ENST00000341247 IL17DQ8TAD2 202 aa7.37□□□□□ -1.23
LIMA1-201ENST00000341247 VSIG2Q96IQ7 327 aa7.37□□□□□ -1.23
LIMA1-201ENST00000341247 PRO1854Q9UHT4 67 aa7.37□□□□□ -1.23
LIMA1-201ENST00000341247 FLNBO75369 2602 aaKnown RBP7.37□□□□□ -1.23
LIMA1-201ENST00000341247 TRAV4A0A0B4J268 109 aa7.37□□□□□ -1.23
LIMA1-201ENST00000341247 TINCRA0A1B0GVN0 87 aa7.37□□□□□ -1.23
LIMA1-201ENST00000341247 PLAC8L1A1L4L8 177 aa7.37□□□□□ -1.23
LIMA1-201ENST00000341247 TMEM238C9JI98 176 aa7.37□□□□□ -1.23
LIMA1-201ENST00000341247 LINC00482Q8N8I6 264 aa7.37□□□□□ -1.23
LIMA1-201ENST00000341247 CLUHP3Q96NS8 147 aa7.36□□□□□ -1.23
LIMA1-201ENST00000341247 TCL1BO95988 128 aa7.36□□□□□ -1.23
LIMA1-201ENST00000341247 F8W1H4 67 aa7.36□□□□□ -1.23
LIMA1-201ENST00000341247 UBE2L6O14933 153 aa7.36□□□□□ -1.23
LIMA1-201ENST00000341247 DEFB4AO15263 64 aa7.36□□□□□ -1.23
LIMA1-201ENST00000341247 GAGE6Q13070 117 aa7.36□□□□□ -1.23
LIMA1-201ENST00000341247 C16orf74Q96GX8 76 aa7.36□□□□□ -1.23
LIMA1-201ENST00000341247 CRLF1O75462 422 aa7.35□□□□□ -1.23
LIMA1-201ENST00000341247 TEP1Q99973 2627 aaKnown RBP7.35□□□□□ -1.23
LIMA1-201ENST00000341247 A0A096LPF7 62 aa7.35□□□□□ -1.23
LIMA1-201ENST00000341247 UBE2D3P61077 147 aa7.35□□□□□ -1.23
LIMA1-201ENST00000341247 UBE2D2P62837 147 aa7.35□□□□□ -1.23
LIMA1-201ENST00000341247 LINC00242Q5T6M2 205 aa7.35□□□□□ -1.23
LIMA1-201ENST00000341247 TMEM101Q96IK0 257 aa7.35□□□□□ -1.23
LIMA1-201ENST00000341247 PRO0461Q9UI25 63 aa7.35□□□□□ -1.23
LIMA1-201ENST00000341247 CSNK1G2-AS1Q8NCQ2 148 aa7.34□□□□□ -1.23
LIMA1-201ENST00000341247 ERG28Q9UKR5 140 aa7.34□□□□□ -1.23
LIMA1-201ENST00000341247 SMCPP49901 116 aaPredicted RBP7.34□□□□□ -1.24
LIMA1-201ENST00000341247 DAZ2Q13117 558 aaKnown RBP7.34□□□□□ -1.24
LIMA1-201ENST00000341247 LITAFQ99732 161 aa7.34□□□□□ -1.24
LIMA1-201ENST00000341247 C1QTNF4Q9BXJ3 329 aa7.34□□□□□ -1.24
LIMA1-201ENST00000341247 Q9H8V8 135 aa7.34□□□□□ -1.24
LIMA1-201ENST00000341247 DAZ4Q86SG3 579 aaKnown RBP7.33□□□□□ -1.24
LIMA1-201ENST00000341247 DAZ3Q9NR90 486 aaKnown RBP7.33□□□□□ -1.24
LIMA1-201ENST00000341247 TRBV10-1A0A0K0K1A3 114 aa7.33□□□□□ -1.24
LIMA1-201ENST00000341247 IGHV3-33P01772 117 aa7.33□□□□□ -1.24
LIMA1-201ENST00000341247 CRYBA4P53673 196 aa7.33□□□□□ -1.24
LIMA1-201ENST00000341247 CMC4P56277 68 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-201ENST00000341247 TMEM243Q9BU79 118 aa7.32□□□□□ -1.24
LIMA1-201ENST00000341247 CHCHD5Q9BSY4 110 aa7.32□□□□□ -1.24
LIMA1-201ENST00000341247 CDC42SE2Q9NRR3 84 aa7.31□□□□□ -1.24
LIMA1-201ENST00000341247 TOMM7Q9P0U1 55 aa7.31□□□□□ -1.24
LIMA1-201ENST00000341247 ZFAND6Q6FIF0 208 aa7.31□□□□□ -1.24
LIMA1-201ENST00000341247 HERVK_113P63121 156 aa7.31□□□□□ -1.24
LIMA1-201ENST00000341247 GTSF1LQ9H1H1 148 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms