RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 DEFB136Q30KP8 78 aa7.71□□□□□ -1.17
CCDC88A-202ENST00000336838 C9orf85Q96MD7 179 aa7.71□□□□□ -1.17
CCDC88A-202ENST00000336838 PRORYQ9H606 182 aa7.71□□□□□ -1.17
CCDC88A-202ENST00000336838 IGKV3D-7A0A0C4DH55 119 aa7.71□□□□□ -1.18
CCDC88A-202ENST00000336838 C5orf47Q569G3 176 aa7.71□□□□□ -1.18
CCDC88A-202ENST00000336838 EP400Q96L91 3159 aa7.71□□□□□ -1.18
CCDC88A-202ENST00000336838 UBE2BP63146 152 aa7.7□□□□□ -1.18
CCDC88A-202ENST00000336838 Q8NA96 180 aa7.7□□□□□ -1.18
CCDC88A-202ENST00000336838 C14orf132Q9NPU4 83 aa7.7□□□□□ -1.18
CCDC88A-202ENST00000336838 IGKV2D-26A0A0A0MRZ7 120 aa7.7□□□□□ -1.18
CCDC88A-202ENST00000336838 POLR2KP53803 58 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-202ENST00000336838 CLPSL2Q6UWE3 100 aa7.7□□□□□ -1.18
CCDC88A-202ENST00000336838 PKD1L2Q7Z442 2459 aa7.7□□□□□ -1.18
CCDC88A-202ENST00000336838 LINC01546A6NGU7 62 aa7.7□□□□□ -1.18
CCDC88A-202ENST00000336838 RPL18AQ02543 176 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-202ENST00000336838 LINC00467Q9BRT7 94 aa7.69□□□□□ -1.18
CCDC88A-202ENST00000336838 Q6ZQT7 251 aa7.69□□□□□ -1.18
CCDC88A-202ENST00000336838 PSMG3-AS1Q96PY0 264 aa7.69□□□□□ -1.18
CCDC88A-202ENST00000336838 FAM236DA0A1B0GTK5 79 aa7.69□□□□□ -1.18
CCDC88A-202ENST00000336838 FAM236CP0DP71 79 aa7.69□□□□□ -1.18
CCDC88A-202ENST00000336838 RS1O15537 224 aa7.69□□□□□ -1.18
CCDC88A-202ENST00000336838 C11orf71Q6IPW1 123 aa7.69□□□□□ -1.18
CCDC88A-202ENST00000336838 C1orf229Q6ZS94 237 aaPredicted RBP7.69□□□□□ -1.18
CCDC88A-202ENST00000336838 Q8N976 141 aa7.68□□□□□ -1.18
CCDC88A-202ENST00000336838 CLPSL1A2RUU4 121 aa7.68□□□□□ -1.18
CCDC88A-202ENST00000336838 KIR2DL5BQ8NHK3 375 aa7.68□□□□□ -1.18
CCDC88A-202ENST00000336838 LINC00310P59036 64 aa7.68□□□□□ -1.18
CCDC88A-202ENST00000336838 SMAD5-AS1Q9Y6J3 95 aa7.68□□□□□ -1.18
CCDC88A-202ENST00000336838 PRRC2CQ9Y520 2896 aaKnown RBP7.68□□□□□ -1.18
CCDC88A-202ENST00000336838 UBE2D3P61077 147 aa7.68□□□□□ -1.18
CCDC88A-202ENST00000336838 UBE2D2P62837 147 aa7.68□□□□□ -1.18
CCDC88A-202ENST00000336838 Q6YL49 198 aa7.68□□□□□ -1.18
CCDC88A-202ENST00000336838 TSHBP01222 138 aa7.68□□□□□ -1.18
CCDC88A-202ENST00000336838 CRIP2P52943 208 aaPredicted RBP7.68□□□□□ -1.18
CCDC88A-202ENST00000336838 NDUFC2-KCTD14E9PQ53 114 aa7.67□□□□□ -1.18
CCDC88A-202ENST00000336838 C20orf173Q96LM9 149 aa7.67□□□□□ -1.18
CCDC88A-202ENST00000336838 CDKN2A-AS1Q9UH64 79 aa7.67□□□□□ -1.18
CCDC88A-202ENST00000336838 PTH2Q96A98 100 aa7.67□□□□□ -1.18
CCDC88A-202ENST00000336838 J3QKU1 62 aa7.67□□□□□ -1.18
CCDC88A-202ENST00000336838 BPY2O14599 106 aa7.67□□□□□ -1.18
CCDC88A-202ENST00000336838 CITED2Q99967 270 aaPredicted RBP7.67□□□□□ -1.18
CCDC88A-202ENST00000336838 DEFB121Q5J5C9 76 aa7.67□□□□□ -1.18
CCDC88A-202ENST00000336838 CSDC2Q9Y534 153 aaKnown RBP7.67□□□□□ -1.18
CCDC88A-202ENST00000336838 RNASE3P12724 160 aaKnown RBP7.66□□□□□ -1.18
CCDC88A-202ENST00000336838 UBE2D1P51668 147 aa7.66□□□□□ -1.18
CCDC88A-202ENST00000336838 TRBV6-8A0A0A6YYG3 113 aa7.66□□□□□ -1.18
CCDC88A-202ENST00000336838 MAPKAPK5-AS1Q8N8E1 139 aa7.66□□□□□ -1.18
CCDC88A-202ENST00000336838 COX7CP15954 63 aa7.66□□□□□ -1.18
CCDC88A-202ENST00000336838 DEFB114Q30KQ6 69 aa7.66□□□□□ -1.18
CCDC88A-202ENST00000336838 REG3AQ06141 175 aa7.65□□□□□ -1.18
CCDC88A-202ENST00000336838 Q6JHZ5 121 aa7.65□□□□□ -1.18
CCDC88A-202ENST00000336838 MRPS12O15235 138 aaKnown RBP7.65□□□□□ -1.18
CCDC88A-202ENST00000336838 IGLV1-40P01703 118 aa7.65□□□□□ -1.18
CCDC88A-202ENST00000336838 IGIPA6NJ69 53 aa7.65□□□□□ -1.18
CCDC88A-202ENST00000336838 WFDC9Q8NEX5 89 aa7.65□□□□□ -1.19
CCDC88A-202ENST00000336838 DHRS4-AS1Q9P1J3 65 aa7.65□□□□□ -1.19
CCDC88A-202ENST00000336838 MIFP14174 115 aa7.64□□□□□ -1.19
CCDC88A-202ENST00000336838 CD164L2Q6UWJ8 174 aa7.64□□□□□ -1.19
CCDC88A-202ENST00000336838 UBE2D4Q9Y2X8 147 aa7.64□□□□□ -1.19
CCDC88A-202ENST00000336838 F8WDY8 70 aa7.64□□□□□ -1.19
CCDC88A-202ENST00000336838 IGLV10-54A0A075B6I4 117 aa7.64□□□□□ -1.19
CCDC88A-202ENST00000336838 MRPL55Q7Z7F7 128 aaKnown RBP7.63□□□□□ -1.19
CCDC88A-202ENST00000336838 MAPK1IP1LQ8NDC0 245 aa7.63□□□□□ -1.19
CCDC88A-202ENST00000336838 IL17DQ8TAD2 202 aa7.63□□□□□ -1.19
CCDC88A-202ENST00000336838 DCANP1Q8TF63 244 aa7.63□□□□□ -1.19
CCDC88A-202ENST00000336838 DOPEY1Q5JWR5 2465 aa7.63□□□□□ -1.19
CCDC88A-202ENST00000336838 B9D2Q9BPU9 175 aa7.63□□□□□ -1.19
CCDC88A-202ENST00000336838 Q8IZM0 81 aa7.62□□□□□ -1.19
CCDC88A-202ENST00000336838 NCR3O14931 201 aa7.62□□□□□ -1.19
CCDC88A-202ENST00000336838 DEFB105AQ8NG35 78 aa7.62□□□□□ -1.19
CCDC88A-202ENST00000336838 CHCHD10Q8WYQ3 142 aaPredicted RBP7.62□□□□□ -1.19
CCDC88A-202ENST00000336838 CHKB-CPT1BH3BT56 60 aa7.62□□□□□ -1.19
CCDC88A-202ENST00000336838 A0A096LPF7 62 aa7.62□□□□□ -1.19
CCDC88A-202ENST00000336838 DNAJC9-AS1A6NH13 148 aa7.62□□□□□ -1.19
CCDC88A-202ENST00000336838 NDUFS5O43920 106 aa7.62□□□□□ -1.19
CCDC88A-202ENST00000336838 SDIM1Q6ZPB5 146 aa7.62□□□□□ -1.19
CCDC88A-202ENST00000336838 SPRY2O43597 315 aa7.61□□□□□ -1.19
CCDC88A-202ENST00000336838 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.61□□□□□ -1.19
CCDC88A-202ENST00000336838 Q9HAA7 133 aa7.61□□□□□ -1.19
CCDC88A-202ENST00000336838 LINC01561Q8N1V8 128 aa7.61□□□□□ -1.19
CCDC88A-202ENST00000336838 TRAV23DV6A0A075B6W5 121 aa7.61□□□□□ -1.19
CCDC88A-202ENST00000336838 CHCHD7Q9BUK0 85 aa7.6□□□□□ -1.19
CCDC88A-202ENST00000336838 CRYGDP07320 174 aa7.6□□□□□ -1.19
CCDC88A-202ENST00000336838 KLK12Q9UKR0 248 aa7.6□□□□□ -1.19
CCDC88A-202ENST00000336838 Q6ZTI0 123 aa7.6□□□□□ -1.19
CCDC88A-202ENST00000336838 RPL28P46779 137 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-202ENST00000336838 FAM19A3Q7Z5A8 133 aa7.6□□□□□ -1.19
CCDC88A-202ENST00000336838 UBE2AP49459 152 aa7.59□□□□□ -1.19
CCDC88A-202ENST00000336838 LINC00269Q8N2A0 174 aa7.59□□□□□ -1.19
CCDC88A-202ENST00000336838 USP17L23D6RBM5 183 aa7.59□□□□□ -1.19
CCDC88A-202ENST00000336838 XGP55808 180 aa7.59□□□□□ -1.2
CCDC88A-202ENST00000336838 DEFB135Q30KP9 77 aa7.58□□□□□ -1.2
CCDC88A-202ENST00000336838 AMELXQ99217 191 aa7.58□□□□□ -1.2
CCDC88A-202ENST00000336838 FAM110AQ9BQ89 295 aa7.58□□□□□ -1.2
CCDC88A-202ENST00000336838 MTORP42345 2549 aa7.58□□□□□ -1.2
CCDC88A-202ENST00000336838 CEMP1Q6PRD7 247 aaPredicted RBP7.58□□□□□ -1.2
CCDC88A-202ENST00000336838 LINC00526Q96FQ7 95 aa7.58□□□□□ -1.2
CCDC88A-202ENST00000336838 IGLV4-69A0A075B6H9 119 aa7.58□□□□□ -1.2
CCDC88A-202ENST00000336838 URB1-AS1Q96HZ7 61 aa7.58□□□□□ -1.2
CCDC88A-202ENST00000336838 CHD8Q9HCK8 2581 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms