RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 LOC107984640A0A0U1RRK4 108 aa10.54□□□□□ -0.72
CCDC88A-201ENST00000263630 IGKV2-28A0A075B6P5 120 aa10.54□□□□□ -0.72
CCDC88A-201ENST00000263630 IGKV2D-28P01615 120 aa10.54□□□□□ -0.72
CCDC88A-201ENST00000263630 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.54□□□□□ -0.72
CCDC88A-201ENST00000263630 NUPR1O60356 82 aa10.53□□□□□ -0.72
CCDC88A-201ENST00000263630 DOPEY1Q5JWR5 2465 aa10.53□□□□□ -0.72
CCDC88A-201ENST00000263630 NEXN-AS1Q8NBZ9 246 aa10.53□□□□□ -0.72
CCDC88A-201ENST00000263630 PTPRSQ13332 1948 aa10.53□□□□□ -0.72
CCDC88A-201ENST00000263630 LRP4O75096 1905 aa10.52□□□□□ -0.72
CCDC88A-201ENST00000263630 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.52□□□□□ -0.73
CCDC88A-201ENST00000263630 TRBV6-8A0A0A6YYG3 113 aa10.52□□□□□ -0.73
CCDC88A-201ENST00000263630 IGLV4-69A0A075B6H9 119 aa10.52□□□□□ -0.73
CCDC88A-201ENST00000263630 PRAC2D3DTV9 90 aa10.52□□□□□ -0.73
CCDC88A-201ENST00000263630 CEMP1Q6PRD7 247 aaPredicted RBP10.52□□□□□ -0.73
CCDC88A-201ENST00000263630 NOTCH4Q99466 2003 aa10.51□□□□□ -0.73
CCDC88A-201ENST00000263630 C19orf71A6NCJ1 209 aa10.51□□□□□ -0.73
CCDC88A-201ENST00000263630 IGLV3-1P01715 115 aa10.51□□□□□ -0.73
CCDC88A-201ENST00000263630 Q8N976 141 aa10.51□□□□□ -0.73
CCDC88A-201ENST00000263630 XAGE1AQ9HD64 81 aa10.51□□□□□ -0.73
CCDC88A-201ENST00000263630 ABCA2Q9BZC7 2435 aa10.51□□□□□ -0.73
CCDC88A-201ENST00000263630 LINC00694P0DN24 101 aa10.51□□□□□ -0.73
CCDC88A-201ENST00000263630 DCANP1Q8TF63 244 aa10.51□□□□□ -0.73
CCDC88A-201ENST00000263630 Q6JHZ5 121 aa10.5□□□□□ -0.73
CCDC88A-201ENST00000263630 CDKN2A-AS1Q9UH64 79 aa10.5□□□□□ -0.73
CCDC88A-201ENST00000263630 A6NDX4 124 aa10.49□□□□□ -0.73
CCDC88A-201ENST00000263630 PLA2G2AP14555 144 aa10.49□□□□□ -0.73
CCDC88A-201ENST00000263630 YPEL4Q96NS1 127 aa10.49□□□□□ -0.73
CCDC88A-201ENST00000263630 C22orf34Q6ZV56 151 aa10.49□□□□□ -0.73
CCDC88A-201ENST00000263630 PPDPFQ9H3Y8 114 aa10.49□□□□□ -0.73
CCDC88A-201ENST00000263630 PLAC8L1A1L4L8 177 aa10.49□□□□□ -0.73
CCDC88A-201ENST00000263630 RITA1Q96K30 269 aa10.49□□□□□ -0.73
CCDC88A-201ENST00000263630 PYGO1Q9Y3Y4 419 aa10.49□□□□□ -0.73
CCDC88A-201ENST00000263630 RPL28P46779 137 aaKnown RBP10.48□□□□□ -0.73
CCDC88A-201ENST00000263630 CD164L2Q6UWJ8 174 aa10.48□□□□□ -0.73
CCDC88A-201ENST00000263630 Q6ZQY7 126 aa10.48□□□□□ -0.73
CCDC88A-201ENST00000263630 IGLV4-3A0A075B6K6 122 aa10.48□□□□□ -0.73
CCDC88A-201ENST00000263630 MRPS12O15235 138 aaKnown RBP10.48□□□□□ -0.73
CCDC88A-201ENST00000263630 PATE2Q6UY27 113 aa10.48□□□□□ -0.73
CCDC88A-201ENST00000263630 FAM215AQ9Y5M1 114 aa10.48□□□□□ -0.73
CCDC88A-201ENST00000263630 ZNF503-AS2A6NEH8 195 aa10.48□□□□□ -0.73
CCDC88A-201ENST00000263630 Q6Q795 121 aa10.48□□□□□ -0.73
CCDC88A-201ENST00000263630 LINC00208Q96KT6 92 aa10.48□□□□□ -0.73
CCDC88A-201ENST00000263630 TRAV10A0A0B4J240 114 aa10.47□□□□□ -0.73
CCDC88A-201ENST00000263630 NANOS2P60321 138 aaKnown RBP10.47□□□□□ -0.73
CCDC88A-201ENST00000263630 TRBV6-4A0A1B0GX49 114 aa10.47□□□□□ -0.73
CCDC88A-201ENST00000263630 Q6ZTI0 123 aa10.47□□□□□ -0.73
CCDC88A-201ENST00000263630 LST1O00453 97 aa10.46□□□□□ -0.73
CCDC88A-201ENST00000263630 CELA1Q9UNI1 258 aa10.46□□□□□ -0.73
CCDC88A-201ENST00000263630 CCDC179H3BU77 68 aa10.46□□□□□ -0.74
CCDC88A-201ENST00000263630 LTBP1Q14766 1721 aa10.45□□□□□ -0.74
CCDC88A-201ENST00000263630 SPAG11AQ6PDA7 123 aa10.45□□□□□ -0.74
CCDC88A-201ENST00000263630 ZNF22P17026 224 aaPredicted RBP10.44□□□□□ -0.74
CCDC88A-201ENST00000263630 C11orf53Q8IXP5 236 aa10.44□□□□□ -0.74
CCDC88A-201ENST00000263630 ZNF73O43830 326 aaPredicted RBP10.44□□□□□ -0.74
CCDC88A-201ENST00000263630 PLA2G1BP04054 148 aaKnown RBP10.44□□□□□ -0.74
CCDC88A-201ENST00000263630 PROK2Q9HC23 129 aa10.44□□□□□ -0.74
CCDC88A-201ENST00000263630 CIRBP-AS1Q8TBR5 109 aa10.44□□□□□ -0.74
CCDC88A-201ENST00000263630 LIMD2Q9BT23 127 aa10.44□□□□□ -0.74
CCDC88A-201ENST00000263630 M0QXV9 152 aa10.44□□□□□ -0.74
CCDC88A-201ENST00000263630 SMIM11BQ8TCY0 68 aa10.44□□□□□ -0.74
CCDC88A-201ENST00000263630 TP73-AS1Q9UF72 201 aa10.44□□□□□ -0.74
CCDC88A-201ENST00000263630 PSPHP1O15172 72 aa10.44□□□□□ -0.74
CCDC88A-201ENST00000263630 ZNF843Q8N446 348 aa10.43□□□□□ -0.74
CCDC88A-201ENST00000263630 DNAJC9-AS1A6NH13 148 aa10.43□□□□□ -0.74
CCDC88A-201ENST00000263630 SOSTDC1Q6X4U4 206 aa10.43□□□□□ -0.74
CCDC88A-201ENST00000263630 CCDC168Q8NDH2 2452 aa10.42□□□□□ -0.74
CCDC88A-201ENST00000263630 LOC100131303A0A0U1RQF7 123 aa10.42□□□□□ -0.74
CCDC88A-201ENST00000263630 TRBV7-7A0A0K0K1E9 115 aa10.42□□□□□ -0.74
CCDC88A-201ENST00000263630 UNQ9165/PRO28630Q6UXU0 137 aa10.42□□□□□ -0.74
CCDC88A-201ENST00000263630 ZFP36P26651 326 aaKnown RBP10.41□□□□□ -0.74
CCDC88A-201ENST00000263630 RSPO1Q2MKA7 263 aaPredicted RBP10.41□□□□□ -0.74
CCDC88A-201ENST00000263630 RPL37AP8A6NKH3 93 aa10.41□□□□□ -0.74
CCDC88A-201ENST00000263630 LINC01547P58512 204 aaPredicted RBP10.4□□□□□ -0.74
CCDC88A-201ENST00000263630 hDV103S1A0JD37 113 aa10.4□□□□□ -0.74
CCDC88A-201ENST00000263630 H0Y9P7 68 aa10.4□□□□□ -0.74
CCDC88A-201ENST00000263630 LELP1Q5T871 98 aa10.4□□□□□ -0.74
CCDC88A-201ENST00000263630 TP53TG3Q9ULZ0 132 aa10.4□□□□□ -0.74
CCDC88A-201ENST00000263630 CXCL6P80162 114 aa10.4□□□□□ -0.74
CCDC88A-201ENST00000263630 ADAMTS20P59510 1910 aa10.39□□□□□ -0.75
CCDC88A-201ENST00000263630 DAZAP2Q15038 168 aaPredicted RBP10.39□□□□□ -0.75
CCDC88A-201ENST00000263630 IGHV6-1A0A0B4J1U7 121 aa10.39□□□□□ -0.75
CCDC88A-201ENST00000263630 FSHBP01225 129 aa10.39□□□□□ -0.75
CCDC88A-201ENST00000263630 M0QY20 66 aa10.39□□□□□ -0.75
CCDC88A-201ENST00000263630 REG3GQ6UW15 175 aa10.38□□□□□ -0.75
CCDC88A-201ENST00000263630 GPR179Q6PRD1 2367 aa10.38□□□□□ -0.75
CCDC88A-201ENST00000263630 NTM-AS1Q6ZSK4 140 aa10.38□□□□□ -0.75
CCDC88A-201ENST00000263630 C1orf137Q5JT78 98 aa10.38□□□□□ -0.75
CCDC88A-201ENST00000263630 SPINK1P00995 79 aa10.37□□□□□ -0.75
CCDC88A-201ENST00000263630 CRYGAP11844 174 aa10.37□□□□□ -0.75
CCDC88A-201ENST00000263630 POM121L12Q8N7R1 296 aa10.37□□□□□ -0.75
CCDC88A-201ENST00000263630 A8MZ25 164 aa10.36□□□□□ -0.75
CCDC88A-201ENST00000263630 Q8IZM0 81 aa10.36□□□□□ -0.75
CCDC88A-201ENST00000263630 MYO18BQ8IUG5 2567 aa10.36□□□□□ -0.75
CCDC88A-201ENST00000263630 DEFB114Q30KQ6 69 aa10.36□□□□□ -0.75
CCDC88A-201ENST00000263630 TMEM254Q8TBM7 123 aa10.36□□□□□ -0.75
CCDC88A-201ENST00000263630 KPRPQ5T749 579 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-201ENST00000263630 BEAN1Q3B7T3 259 aa10.36□□□□□ -0.75
CCDC88A-201ENST00000263630 SHISA2Q6UWI4 295 aa10.36□□□□□ -0.75
CCDC88A-201ENST00000263630 Q6ZSR3 168 aa10.36□□□□□ -0.75
CCDC88A-201ENST00000263630 U3KQK5 164 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms