RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 ZC3H15Q8WU90 426 aaKnown RBP20.53■□□□□ 0.88
CLN3-256ENST00000637107 TM6SF1Q9BZW5 370 aa20.53■□□□□ 0.88
CLN3-256ENST00000637107 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.53■□□□□ 0.882e-6■■■■■ 40.7
CLN3-256ENST00000637107 RFX7Q2KHR2 1363 aa20.52■□□□□ 0.88
CLN3-256ENST00000637107 GPR75-ASB3A0A0A6YYF3 556 aa20.52■□□□□ 0.88
CLN3-256ENST00000637107 MYO1BO43795 1136 aa20.52■□□□□ 0.88
CLN3-256ENST00000637107 IGSF3O75054 1194 aa20.52■□□□□ 0.88
CLN3-256ENST00000637107 TOMM70O94826 608 aa20.52■□□□□ 0.88
CLN3-256ENST00000637107 CACNB3P54284 484 aa20.52■□□□□ 0.88
CLN3-256ENST00000637107 AK2P54819 239 aa20.52■□□□□ 0.88
CLN3-256ENST00000637107 L1TD1Q5T7N2 865 aaKnown RBP20.52■□□□□ 0.88
CLN3-256ENST00000637107 CDC42EP5Q6NZY7 148 aa20.52■□□□□ 0.88
CLN3-256ENST00000637107 MIGA1Q8NAN2 632 aa20.52■□□□□ 0.88
CLN3-256ENST00000637107 AATFQ9NY61 560 aaKnown RBP eCLIP20.52■□□□□ 0.88
CLN3-256ENST00000637107 ZNF70Q9UC06 446 aaPredicted RBP20.52■□□□□ 0.88
CLN3-256ENST00000637107 CASTP20810 708 aaKnown RBP20.51■□□□□ 0.87
CLN3-256ENST00000637107 ADCK5Q3MIX3 580 aa20.51■□□□□ 0.87
CLN3-256ENST00000637107 CREB3L3Q68CJ9 461 aa20.51■□□□□ 0.87
CLN3-256ENST00000637107 MCTP1Q6DN14 999 aa20.51■□□□□ 0.87
CLN3-256ENST00000637107 FSD2A1L4K1 749 aa20.51■□□□□ 0.87
CLN3-256ENST00000637107 SPDYE2Q495Y8 402 aa20.51■□□□□ 0.87
CLN3-256ENST00000637107 DLK2Q6UY11 383 aa20.51■□□□□ 0.87
CLN3-256ENST00000637107 JAKMIP1Q96N16 626 aaKnown RBP20.51■□□□□ 0.87
CLN3-256ENST00000637107 VEZTQ9HBM0 779 aa20.51■□□□□ 0.87
CLN3-256ENST00000637107 ZSWIM6Q9HCJ5 1215 aa20.51■□□□□ 0.87
CLN3-256ENST00000637107 CPA1P15085 419 aa20.5■□□□□ 0.87
CLN3-256ENST00000637107 DYNLL1P63167 89 aaKnown RBP20.5■□□□□ 0.87
CLN3-256ENST00000637107 CHADLQ6NUI6 762 aa20.5■□□□□ 0.87
CLN3-256ENST00000637107 RUFY3Q7L099 469 aa20.5■□□□□ 0.87
CLN3-256ENST00000637107 DCPSQ96C86 337 aaKnown RBP20.5■□□□□ 0.87
CLN3-256ENST00000637107 USP40Q9NVE5 1235 aa20.5■□□□□ 0.87
CLN3-256ENST00000637107 LIMCH1Q9UPQ0 1083 aa20.5■□□□□ 0.87
CLN3-256ENST00000637107 GOLGA6L3A6NEY3 463 aa20.49■□□□□ 0.87
CLN3-256ENST00000637107 BRD1O95696 1058 aa20.49■□□□□ 0.87
CLN3-256ENST00000637107 ZKSCAN1P17029 563 aaPredicted RBP20.49■□□□□ 0.87
CLN3-256ENST00000637107 RHBDL3P58872 404 aa20.49■□□□□ 0.87
CLN3-256ENST00000637107 UBE3CQ15386 1083 aa20.49■□□□□ 0.87
CLN3-256ENST00000637107 ZNF589Q86UQ0 364 aaPredicted RBP20.49■□□□□ 0.87
CLN3-256ENST00000637107 SLC27A2O14975 620 aa20.49■□□□□ 0.87
CLN3-256ENST00000637107 ZSCAN25Q6NSZ9 544 aa20.49■□□□□ 0.87
CLN3-256ENST00000637107 GLIS2Q9BZE0 524 aaPredicted RBP20.49■□□□□ 0.87
CLN3-256ENST00000637107 PDRG1Q9NUG6 133 aa20.49■□□□□ 0.87
CLN3-256ENST00000637107 TCP10L2B9ZVM9 353 aa20.48■□□□□ 0.87
CLN3-256ENST00000637107 ADM5C9JUS6 153 aa20.48■□□□□ 0.87
CLN3-256ENST00000637107 RNF113AO15541 343 aaKnown RBP20.48■□□□□ 0.87
CLN3-256ENST00000637107 NFIAQ12857 509 aa20.48■□□□□ 0.87
CLN3-256ENST00000637107 VPS53Q5VIR6 699 aa20.48■□□□□ 0.87
CLN3-256ENST00000637107 KRT26Q7Z3Y9 468 aa20.48■□□□□ 0.87
CLN3-256ENST00000637107 RBM46Q8TBY0 533 aaKnown RBP20.48■□□□□ 0.87
CLN3-256ENST00000637107 SH3RF3Q8TEJ3 882 aaPredicted RBP20.48■□□□□ 0.87
CLN3-256ENST00000637107 PUS7LQ9H0K6 701 aaKnown RBP20.48■□□□□ 0.87
CLN3-256ENST00000637107 CYP46A1Q9Y6A2 500 aa20.48■□□□□ 0.87
CLN3-256ENST00000637107 PITPNM2Q9BZ72 1349 aa20.48■□□□□ 0.87
CLN3-256ENST00000637107 BAG3O95817 575 aa20.47■□□□□ 0.87
CLN3-256ENST00000637107 FMR1Q06787 632 aaKnown RBP eCLIP20.47■□□□□ 0.87
CLN3-256ENST00000637107 TMED8Q6PL24 325 aaPredicted RBP20.47■□□□□ 0.87
CLN3-256ENST00000637107 USP48Q86UV5 1035 aa20.47■□□□□ 0.87
CLN3-256ENST00000637107 SMC1BQ8NDV3 1235 aa20.47■□□□□ 0.87
CLN3-256ENST00000637107 RIOK1Q9BRS2 568 aaKnown RBP20.47■□□□□ 0.87
CLN3-256ENST00000637107 NOL10Q9BSC4 688 aaKnown RBP20.47■□□□□ 0.87
CLN3-256ENST00000637107 LMBRD1Q9NUN5 540 aa20.47■□□□□ 0.87
CLN3-256ENST00000637107 PPP4CP60510 307 aa20.47■□□□□ 0.87
CLN3-256ENST00000637107 OSBP2Q969R2 916 aa20.47■□□□□ 0.87
CLN3-256ENST00000637107 BRPF3Q9ULD4 1205 aa20.47■□□□□ 0.87
CLN3-256ENST00000637107 TRAF5O00463 557 aa20.46■□□□□ 0.87
CLN3-256ENST00000637107 ZFYP08048 801 aaPredicted RBP20.46■□□□□ 0.87
CLN3-256ENST00000637107 PRAMEF18Q5VWM3 479 aa20.46■□□□□ 0.87
CLN3-256ENST00000637107 CDC37L1Q7L3B6 337 aa20.46■□□□□ 0.87
CLN3-256ENST00000637107 APOBEC3FQ8IUX4 373 aaKnown RBP20.46■□□□□ 0.87
CLN3-256ENST00000637107 SULF1Q8IWU6 871 aa20.46■□□□□ 0.87
CLN3-256ENST00000637107 SEC62Q99442 399 aaKnown RBP20.46■□□□□ 0.87
CLN3-256ENST00000637107 LARP6Q9BRS8 491 aaKnown RBP20.46■□□□□ 0.87
CLN3-256ENST00000637107 RPAP1Q9BWH6 1393 aaPredicted RBP20.46■□□□□ 0.87
CLN3-256ENST00000637107 MAGEB6P1A0A0J9YX57 407 aa20.45■□□□□ 0.86
CLN3-256ENST00000637107 WDHD1O75717 1129 aaPredicted RBP20.45■□□□□ 0.86
CLN3-256ENST00000637107 ITGBL1O95965 494 aaPredicted RBP20.45■□□□□ 0.86
CLN3-256ENST00000637107 KLHL40Q2TBA0 621 aa20.45■□□□□ 0.86
CLN3-256ENST00000637107 RNF20Q5VTR2 975 aa20.45■□□□□ 0.86
CLN3-256ENST00000637107 FOXD4L5Q5VV16 416 aaPredicted RBP20.45■□□□□ 0.86
CLN3-256ENST00000637107 FOXD4L4Q8WXT5 416 aaPredicted RBP20.45■□□□□ 0.86
CLN3-256ENST00000637107 APPBP2Q92624 585 aa20.45■□□□□ 0.86
CLN3-256ENST00000637107 DEFB129Q9H1M3 183 aa20.45■□□□□ 0.86
CLN3-256ENST00000637107 TMOD2Q9NZR1 351 aa20.45■□□□□ 0.86
CLN3-256ENST00000637107 CDK5RAP2Q96SN8 1893 aa20.45■□□□□ 0.86
CLN3-256ENST00000637107 PSMA5P28066 241 aa20.45■□□□□ 0.86
CLN3-256ENST00000637107 TCP10Q12799 353 aa20.45■□□□□ 0.86
CLN3-256ENST00000637107 LRRFIP1Q32MZ4 808 aaKnown RBP20.45■□□□□ 0.86
CLN3-256ENST00000637107 LCORLQ8N3X6 602 aa20.45■□□□□ 0.86
CLN3-256ENST00000637107 ARMT1Q9H993 441 aa20.45■□□□□ 0.86
CLN3-256ENST00000637107 DDX4Q9NQI0 724 aaKnown RBP20.45■□□□□ 0.86
CLN3-256ENST00000637107 FAM198AQ9UFP1 575 aa20.45■□□□□ 0.86
CLN3-256ENST00000637107 DDX49Q9Y6V7 483 aaKnown RBP20.45■□□□□ 0.86
CLN3-256ENST00000637107 MBD4O95243 580 aa20.44■□□□□ 0.86
CLN3-256ENST00000637107 PICALMQ13492 652 aa20.44■□□□□ 0.86
CLN3-256ENST00000637107 RASA3Q14644 834 aa20.44■□□□□ 0.86
CLN3-256ENST00000637107 TEX11Q8IYF3 940 aa20.44■□□□□ 0.86
CLN3-256ENST00000637107 ZSCAN31Q96LW9 406 aaPredicted RBP20.44■□□□□ 0.86
CLN3-256ENST00000637107 CNTNAP1P78357 1384 aa20.44■□□□□ 0.86
CLN3-256ENST00000637107 M0R2C6 588 aa20.43■□□□□ 0.86
CLN3-256ENST00000637107 LARGE1O95461 756 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms