RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 NOL9Q5SY16 702 aaKnown RBP9.76□□□□□ -0.85
CLK1-215ENST00000621181 SLAIN1Q8ND83 568 aa9.76□□□□□ -0.85
CLK1-215ENST00000621181 NR2E3Q9Y5X4 410 aa9.76□□□□□ -0.85
CLK1-215ENST00000621181 EYA2O00167 538 aa9.75□□□□□ -0.85
CLK1-215ENST00000621181 CXCL11O14625 94 aa9.75□□□□□ -0.85
CLK1-215ENST00000621181 FARP2O94887 1054 aaPredicted RBP9.75□□□□□ -0.85
CLK1-215ENST00000621181 FASTKD5Q7L8L6 764 aaKnown RBP9.75□□□□□ -0.85
CLK1-215ENST00000621181 FAM9BQ8IZU0 186 aa9.75□□□□□ -0.85
CLK1-215ENST00000621181 U2AF1L4Q8WU68 220 aaKnown RBP9.75□□□□□ -0.85
CLK1-215ENST00000621181 USP44Q9H0E7 712 aa9.75□□□□□ -0.85
CLK1-215ENST00000621181 PICK1Q9NRD5 415 aa9.75□□□□□ -0.85
CLK1-215ENST00000621181 USP40Q9NVE5 1235 aa9.75□□□□□ -0.85
CLK1-215ENST00000621181 GNL3LQ9NVN8 582 aaKnown RBP9.75□□□□□ -0.85
CLK1-215ENST00000621181 ZHX2Q9Y6X8 837 aa9.75□□□□□ -0.85
CLK1-215ENST00000621181 BCRP11274 1271 aa9.75□□□□□ -0.85
CLK1-215ENST00000621181 MOGSQ13724 837 aa9.75□□□□□ -0.85
CLK1-215ENST00000621181 UBE2Q1Q7Z7E8 422 aa9.75□□□□□ -0.85
CLK1-215ENST00000621181 ZSCAN29Q8IWY8 852 aaPredicted RBP9.75□□□□□ -0.85
CLK1-215ENST00000621181 PIP4P2Q8N4L2 257 aa9.75□□□□□ -0.85
CLK1-215ENST00000621181 SMCR8Q8TEV9 937 aaPredicted RBP9.75□□□□□ -0.85
CLK1-215ENST00000621181 FAM198AQ9UFP1 575 aa9.75□□□□□ -0.85
CLK1-215ENST00000621181 ATP2B3Q16720 1220 aa9.74□□□□□ -0.85
CLK1-215ENST00000621181 GPAT2Q6NUI2 795 aa9.74□□□□□ -0.85
CLK1-215ENST00000621181 GADL1Q6ZQY3 521 aa9.74□□□□□ -0.85
CLK1-215ENST00000621181 SCYL3Q8IZE3 742 aa9.74□□□□□ -0.85
CLK1-215ENST00000621181 MRPL50Q8N5N7 158 aaKnown RBP9.74□□□□□ -0.85
CLK1-215ENST00000621181 SIL1Q9H173 461 aa9.74□□□□□ -0.85
CLK1-215ENST00000621181 UNC93B1Q9H1C4 597 aa9.74□□□□□ -0.85
CLK1-215ENST00000621181 GABRQQ9UN88 632 aa9.74□□□□□ -0.85
CLK1-215ENST00000621181 MGAMO43451 1857 aa9.73□□□□□ -0.85
CLK1-215ENST00000621181 A0A0G2JLL6 359 aaPredicted RBP9.73□□□□□ -0.85
CLK1-215ENST00000621181 TNPO2O14787 897 aaKnown RBP9.73□□□□□ -0.85
CLK1-215ENST00000621181 ADCY3O60266 1144 aa9.73□□□□□ -0.85
CLK1-215ENST00000621181 EVI5O60447 810 aa9.73□□□□□ -0.85
CLK1-215ENST00000621181 PTPRAP18433 802 aa9.73□□□□□ -0.85
CLK1-215ENST00000621181 FLT3LGP49771 235 aa9.73□□□□□ -0.85
CLK1-215ENST00000621181 PRRT2Q7Z6L0 340 aaPredicted RBP9.73□□□□□ -0.85
CLK1-215ENST00000621181 ZFPM1Q8IX07 1006 aa9.73□□□□□ -0.85
CLK1-215ENST00000621181 CEP126Q9P2H0 1117 aa9.73□□□□□ -0.85
CLK1-215ENST00000621181 TAOK2Q9UL54 1235 aa9.73□□□□□ -0.85
CLK1-215ENST00000621181 DENND2AQ9ULE3 1009 aa9.73□□□□□ -0.85
CLK1-215ENST00000621181 LRRFIP2Q9Y608 721 aaKnown RBP9.73□□□□□ -0.85
CLK1-215ENST00000621181 PHF20L1A8MW92 1017 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 SGPL1O95470 568 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 TFRCP02786 760 aaKnown RBP9.72□□□□□ -0.85
CLK1-215ENST00000621181 ELNP15502 786 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 RFX5P48382 616 aaPredicted RBP9.72□□□□□ -0.85
CLK1-215ENST00000621181 RGS3P49796 1198 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 ATG9AQ7Z3C6 839 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 DZIP1Q86YF9 867 aaKnown RBP9.72□□□□□ -0.85
CLK1-215ENST00000621181 ZGPATQ8N5A5 531 aaKnown RBP9.72□□□□□ -0.85
CLK1-215ENST00000621181 AFG3L2Q9Y4W6 797 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 MYH2Q9UKX2 1941 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 SALL1Q9NSC2 1324 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 TRIM75PA6NK02 468 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 SEMA3EO15041 775 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 ENTPD3O75355 529 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 INHAP05111 366 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 PHKA1P46020 1223 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 PXYLP1Q8TE99 480 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 SSH1Q8WYL5 1049 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 DEFB118Q96PH6 123 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 IDI2Q9BXS1 227 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 FBXO3Q9UK99 471 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 SLC45A1Q9Y2W3 748 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 DOCK2Q92608 1830 aa9.72□□□□□ -0.85
CLK1-215ENST00000621181 ZBTB7BO15156 539 aaPredicted RBP9.71□□□□□ -0.85
CLK1-215ENST00000621181 CIAO1O76071 339 aa9.71□□□□□ -0.85
CLK1-215ENST00000621181 UBTFL1P0CB47 393 aaPredicted RBP9.71□□□□□ -0.85
CLK1-215ENST00000621181 FXR2P51116 673 aaKnown RBP eCLIP9.71□□□□□ -0.85
CLK1-215ENST00000621181 PICALMQ13492 652 aa9.71□□□□□ -0.85
CLK1-215ENST00000621181 SLF2Q8IX21 1173 aa9.71□□□□□ -0.85
CLK1-215ENST00000621181 ANKRD13CQ8N6S4 541 aa9.71□□□□□ -0.85
CLK1-215ENST00000621181 COA7Q96BR5 231 aa9.71□□□□□ -0.85
CLK1-215ENST00000621181 PRO3102Q9H379 93 aa9.71□□□□□ -0.85
CLK1-215ENST00000621181 ABCF2Q9UG63 623 aa9.71□□□□□ -0.85
CLK1-215ENST00000621181 ATRNL1Q5VV63 1379 aa9.71□□□□□ -0.85
CLK1-215ENST00000621181 DOCK3Q8IZD9 2030 aa9.71□□□□□ -0.86
CLK1-215ENST00000621181 CTNND1O60716 968 aaKnown RBP9.7□□□□□ -0.86
CLK1-215ENST00000621181 HNRNPUQ00839 825 aaKnown RBP eCLIP9.7□□□□□ -0.86
CLK1-215ENST00000621181 IRF5Q13568 498 aa9.7□□□□□ -0.86
CLK1-215ENST00000621181 SLC17A8Q8NDX2 589 aa9.7□□□□□ -0.86
CLK1-215ENST00000621181 PNMA3Q9UL41 463 aa9.7□□□□□ -0.86
CLK1-215ENST00000621181 AGTPBP1Q9UPW5 1226 aa9.7□□□□□ -0.86
CLK1-215ENST00000621181 PTPRFP10586 1907 aa9.7□□□□□ -0.86
CLK1-215ENST00000621181 ZNF521Q96K83 1311 aa9.7□□□□□ -0.86
CLK1-215ENST00000621181 A0A1W2PPC1 479 aa9.7□□□□□ -0.86
CLK1-215ENST00000621181 DDTLA6NHG4 134 aaPredicted RBP9.7□□□□□ -0.86
CLK1-215ENST00000621181 NEFLP07196 543 aa9.7□□□□□ -0.86
CLK1-215ENST00000621181 IL15P40933 162 aaPredicted RBP9.7□□□□□ -0.86
CLK1-215ENST00000621181 BTDP43251 543 aa9.7□□□□□ -0.86
CLK1-215ENST00000621181 RASGRF1Q13972 1273 aa9.7□□□□□ -0.86
CLK1-215ENST00000621181 CCDC102BQ68D86 513 aa9.7□□□□□ -0.86
CLK1-215ENST00000621181 SH3BP5LQ7L8J4 393 aa9.7□□□□□ -0.86
CLK1-215ENST00000621181 DDX4Q9NQI0 724 aaKnown RBP9.7□□□□□ -0.86
CLK1-215ENST00000621181 PAK6Q9NQU5 681 aaPredicted RBP9.7□□□□□ -0.86
CLK1-215ENST00000621181 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.7□□□□□ -0.86
CLK1-215ENST00000621181 GAKO14976 1311 aa9.69□□□□□ -0.86
CLK1-215ENST00000621181 DOCK1Q14185 1865 aa9.69□□□□□ -0.86
CLK1-215ENST00000621181 E9PSI1 815 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms