RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 RFX7Q2KHR2 1363 aa23.41■■□□□ 1.34
CCDC28A-203ENST00000617445 MAP3K10Q02779 954 aa23.41■■□□□ 1.34
CCDC28A-203ENST00000617445 ZSCAN29Q8IWY8 852 aaPredicted RBP23.41■■□□□ 1.34
CCDC28A-203ENST00000617445 ZFPM1Q8IX07 1006 aa23.41■■□□□ 1.34
CCDC28A-203ENST00000617445 RAI14Q9P0K7 980 aa23.41■■□□□ 1.34
CCDC28A-203ENST00000617445 CEP85Q6P2H3 762 aa23.4■■□□□ 1.34
CCDC28A-203ENST00000617445 PI16Q6UXB8 463 aa23.4■■□□□ 1.34
CCDC28A-203ENST00000617445 TBC1D9Q6ZT07 1266 aa23.4■■□□□ 1.34
CCDC28A-203ENST00000617445 ERC1Q8IUD2 1116 aa23.4■■□□□ 1.34
CCDC28A-203ENST00000617445 FAM43AQ8N2R8 423 aa23.4■■□□□ 1.34
CCDC28A-203ENST00000617445 ZNF384Q8TF68 577 aa23.4■■□□□ 1.34
CCDC28A-203ENST00000617445 TRIM17Q9Y577 477 aa23.4■■□□□ 1.34
CCDC28A-203ENST00000617445 DOCK2Q92608 1830 aa23.4■■□□□ 1.34
CCDC28A-203ENST00000617445 RHBDL3P58872 404 aa23.39■■□□□ 1.33
CCDC28A-203ENST00000617445 OTOP1Q7RTM1 612 aa23.39■■□□□ 1.33
CCDC28A-203ENST00000617445 PANK1Q8TE04 598 aa23.39■■□□□ 1.33
CCDC28A-203ENST00000617445 DBNDD2Q9BQY9 259 aa23.39■■□□□ 1.33
CCDC28A-203ENST00000617445 CHMP4BQ9H444 224 aaKnown RBP23.39■■□□□ 1.33
CCDC28A-203ENST00000617445 KCNH4Q9UQ05 1017 aa23.39■■□□□ 1.33
CCDC28A-203ENST00000617445 ATRNL1Q5VV63 1379 aa23.39■■□□□ 1.33
CCDC28A-203ENST00000617445 PHF20L1A8MW92 1017 aa23.38■■□□□ 1.33
CCDC28A-203ENST00000617445 HSP90AB4PQ58FF6 505 aa23.38■■□□□ 1.33
CCDC28A-203ENST00000617445 NOL10Q9BSC4 688 aaKnown RBP23.38■■□□□ 1.33
CCDC28A-203ENST00000617445 BTBD19C9JJ37 291 aa23.37■■□□□ 1.33
CCDC28A-203ENST00000617445 CXCL11O14625 94 aa23.37■■□□□ 1.33
CCDC28A-203ENST00000617445 TBC1D12O60347 775 aa23.37■■□□□ 1.33
CCDC28A-203ENST00000617445 SH3BP5LQ7L8J4 393 aa23.37■■□□□ 1.33
CCDC28A-203ENST00000617445 EFCC1Q9HA90 598 aa23.37■■□□□ 1.33
CCDC28A-203ENST00000617445 DDX4Q9NQI0 724 aaKnown RBP23.37■■□□□ 1.33
CCDC28A-203ENST00000617445 PICK1Q9NRD5 415 aa23.37■■□□□ 1.33
CCDC28A-203ENST00000617445 DDTLA6NHG4 134 aaPredicted RBP23.36■■□□□ 1.33
CCDC28A-203ENST00000617445 TLR2O60603 784 aa23.36■■□□□ 1.33
CCDC28A-203ENST00000617445 BAG3O95817 575 aa23.36■■□□□ 1.33
CCDC28A-203ENST00000617445 PLCG2P16885 1265 aa23.36■■□□□ 1.33
CCDC28A-203ENST00000617445 PICALMQ13492 652 aa23.36■■□□□ 1.33
CCDC28A-203ENST00000617445 ANKRD23Q86SG2 305 aa23.36■■□□□ 1.33
CCDC28A-203ENST00000617445 SCYL3Q8IZE3 742 aa23.36■■□□□ 1.33
CCDC28A-203ENST00000617445 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.36■■□□□ 1.33
CCDC28A-203ENST00000617445 CD99L2Q8TCZ2 262 aa23.36■■□□□ 1.33
CCDC28A-203ENST00000617445 DDX19BQ9UMR2 479 aa23.36■■□□□ 1.33
CCDC28A-203ENST00000617445 CTNND1O60716 968 aaKnown RBP23.35■■□□□ 1.33
CCDC28A-203ENST00000617445 NAA16Q6N069 864 aaPredicted RBP23.35■■□□□ 1.33
CCDC28A-203ENST00000617445 RPAP2Q8IXW5 612 aaPredicted RBP23.35■■□□□ 1.33
CCDC28A-203ENST00000617445 SNRKQ9NRH2 765 aa23.35■■□□□ 1.33
CCDC28A-203ENST00000617445 DBNLQ9UJU6 430 aaKnown RBP23.35■■□□□ 1.33
CCDC28A-203ENST00000617445 COL2A1P02458 1487 aaPredicted RBP23.35■■□□□ 1.33
CCDC28A-203ENST00000617445 SOX10P56693 466 aa23.34■■□□□ 1.33
CCDC28A-203ENST00000617445 EAF2Q96CJ1 260 aaPredicted RBP23.34■■□□□ 1.33
CCDC28A-203ENST00000617445 RCAN3Q9UKA8 241 aa23.34■■□□□ 1.33
CCDC28A-203ENST00000617445 PTPN22Q9Y2R2 807 aa23.34■■□□□ 1.33
CCDC28A-203ENST00000617445 HMMRO75330 724 aa23.33■■□□□ 1.33
CCDC28A-203ENST00000617445 CYP2E1P05181 493 aaPredicted RBP23.33■■□□□ 1.33
CCDC28A-203ENST00000617445 PPP4CP60510 307 aa23.33■■□□□ 1.33
CCDC28A-203ENST00000617445 TMED8Q6PL24 325 aaPredicted RBP23.33■■□□□ 1.33
CCDC28A-203ENST00000617445 TEX11Q8IYF3 940 aa23.33■■□□□ 1.33
CCDC28A-203ENST00000617445 PDE4DIPQ5VU43 2346 aa23.33■■□□□ 1.33
CCDC28A-203ENST00000617445 PTPRAP18433 802 aa23.32■■□□□ 1.32
CCDC28A-203ENST00000617445 KIF22Q14807 665 aa23.32■■□□□ 1.32
CCDC28A-203ENST00000617445 CCDC8Q9H0W5 538 aaPredicted RBP23.32■■□□□ 1.32
CCDC28A-203ENST00000617445 OSBPL5Q9H0X9 879 aaPredicted RBP23.32■■□□□ 1.32
CCDC28A-203ENST00000617445 GNRH1P01148 92 aa23.31■■□□□ 1.32
CCDC28A-203ENST00000617445 ZAP70P43403 619 aa23.31■■□□□ 1.32
CCDC28A-203ENST00000617445 FASTKD5Q7L8L6 764 aaKnown RBP23.31■■□□□ 1.32
CCDC28A-203ENST00000617445 DHX36Q9H2U1 1008 aaKnown RBP23.31■■□□□ 1.32
CCDC28A-203ENST00000617445 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.31■■□□□ 1.32
CCDC28A-203ENST00000617445 ZBTB40Q9NUA8 1239 aa23.31■■□□□ 1.32
CCDC28A-203ENST00000617445 EXOC6BQ9Y2D4 811 aa23.31■■□□□ 1.32
CCDC28A-203ENST00000617445 ZHX2Q9Y6X8 837 aa23.31■■□□□ 1.32
CCDC28A-203ENST00000617445 MAST2Q6P0Q8 1798 aa23.31■■□□□ 1.32
CCDC28A-203ENST00000617445 PDHXO00330 501 aa23.3■■□□□ 1.32
CCDC28A-203ENST00000617445 CERS3Q8IU89 383 aa23.3■■□□□ 1.32
CCDC28A-203ENST00000617445 AFG3L2Q9Y4W6 797 aa23.3■■□□□ 1.32
CCDC28A-203ENST00000617445 MOGSQ13724 837 aa23.29■■□□□ 1.32
CCDC28A-203ENST00000617445 DOCK1Q14185 1865 aa23.29■■□□□ 1.32
CCDC28A-203ENST00000617445 AACSQ86V21 672 aa23.29■■□□□ 1.32
CCDC28A-203ENST00000617445 SH3RF3Q8TEJ3 882 aaPredicted RBP23.29■■□□□ 1.32
CCDC28A-203ENST00000617445 AATFQ9NY61 560 aaKnown RBP eCLIP23.29■■□□□ 1.32
CCDC28A-203ENST00000617445 TLR7Q9NYK1 1049 aaKnown RBP23.29■■□□□ 1.32
CCDC28A-203ENST00000617445 PI4KBQ9UBF8 816 aa23.29■■□□□ 1.32
CCDC28A-203ENST00000617445 HERC5Q9UII4 1024 aaKnown RBP23.29■■□□□ 1.32
CCDC28A-203ENST00000617445 COG6Q9Y2V7 657 aa23.29■■□□□ 1.32
CCDC28A-203ENST00000617445 A0A0G2JLL6 359 aaPredicted RBP23.28■■□□□ 1.32
CCDC28A-203ENST00000617445 LACTBP83111 547 aaPredicted RBP23.28■■□□□ 1.32
CCDC28A-203ENST00000617445 C17orf99Q6UX52 265 aa23.28■■□□□ 1.32
CCDC28A-203ENST00000617445 PRRT2Q7Z6L0 340 aaPredicted RBP23.28■■□□□ 1.32
CCDC28A-203ENST00000617445 RHPN1Q8TCX5 695 aa23.28■■□□□ 1.32
CCDC28A-203ENST00000617445 KIF1BPQ96EK5 621 aa23.28■■□□□ 1.32
CCDC28A-203ENST00000617445 PARK7Q99497 189 aaKnown RBP23.28■■□□□ 1.32
CCDC28A-203ENST00000617445 TBC1D2Q9BYX2 928 aa23.28■■□□□ 1.32
CCDC28A-203ENST00000617445 SLC45A1Q9Y2W3 748 aa23.28■■□□□ 1.32
CCDC28A-203ENST00000617445 KIAA0100Q14667 2235 aaKnown RBP23.28■■□□□ 1.32
CCDC28A-203ENST00000617445 PRMT2P55345 433 aa23.27■■□□□ 1.32
CCDC28A-203ENST00000617445 PDE3AQ14432 1141 aa23.27■■□□□ 1.32
CCDC28A-203ENST00000617445 CLASRPQ8N2M8 674 aaKnown RBP23.27■■□□□ 1.32
CCDC28A-203ENST00000617445 ARMC5Q96C12 935 aa23.27■■□□□ 1.32
CCDC28A-203ENST00000617445 PIH1D3Q9NQM4 214 aaKnown RBP23.27■■□□□ 1.32
CCDC28A-203ENST00000617445 MYO5AQ9Y4I1 1855 aaKnown RBP23.27■■□□□ 1.32
CCDC28A-203ENST00000617445 RAB11FIP3O75154 756 aa23.26■■□□□ 1.31
CCDC28A-203ENST00000617445 IDH1O75874 414 aaKnown RBP23.25■■□□□ 1.31
CCDC28A-203ENST00000617445 CAP1Q01518 475 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms