RNA–Protein interactions for RNA: ENST00000602716.5

PPFIA3-207, Transcript of PTPRF interacting protein alpha 3, humanhuman

TSL 1 (best)

Gene PPFIA3, Length 2,020 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA3-207ENST00000602716 MINDY4BA8MYZ0 360 aa20.54■□□□□ 0.88
PPFIA3-207ENST00000602716 USP17L12C9JPN9 530 aa20.54■□□□□ 0.88
PPFIA3-207ENST00000602716 USP17L21D6R901 530 aa20.54■□□□□ 0.88
PPFIA3-207ENST00000602716 VIL1P09327 827 aaKnown RBP20.54■□□□□ 0.88
PPFIA3-207ENST00000602716 USP17L8P0C7I0 530 aa20.54■□□□□ 0.88
PPFIA3-207ENST00000602716 PPARAQ07869 468 aa20.54■□□□□ 0.88
PPFIA3-207ENST00000602716 MB21D2Q8IYB1 491 aaPredicted RBP20.54■□□□□ 0.88
PPFIA3-207ENST00000602716 TEX11Q8IYF3 940 aa20.54■□□□□ 0.88
PPFIA3-207ENST00000602716 TEKT1Q969V4 418 aa20.54■□□□□ 0.88
PPFIA3-207ENST00000602716 GMLQ99445 158 aa20.54■□□□□ 0.88
PPFIA3-207ENST00000602716 NOL10Q9BSC4 688 aaKnown RBP20.54■□□□□ 0.88
PPFIA3-207ENST00000602716 CDK5RAP2Q96SN8 1893 aa20.53■□□□□ 0.88
PPFIA3-207ENST00000602716 ANTXR2P58335 489 aa20.53■□□□□ 0.88
PPFIA3-207ENST00000602716 TOB2Q14106 344 aaPredicted RBP20.53■□□□□ 0.88
PPFIA3-207ENST00000602716 GPHNQ9NQX3 736 aaPredicted RBP20.53■□□□□ 0.88
PPFIA3-207ENST00000602716 NAV1Q8NEY1 1877 aa20.53■□□□□ 0.88
PPFIA3-207ENST00000602716 USP5P45974 858 aa20.53■□□□□ 0.88
PPFIA3-207ENST00000602716 SLF2Q8IX21 1173 aa20.53■□□□□ 0.88
PPFIA3-207ENST00000602716 ATP8A2Q9NTI2 1148 aa20.53■□□□□ 0.88
PPFIA3-207ENST00000602716 SAP30BPQ9UHR5 308 aaKnown RBP20.53■□□□□ 0.88
PPFIA3-207ENST00000602716 LAMB1P07942 1786 aa20.52■□□□□ 0.88
PPFIA3-207ENST00000602716 FLT1P17948 1338 aa20.52■□□□□ 0.88
PPFIA3-207ENST00000602716 SHTN1A0MZ66 631 aa20.52■□□□□ 0.88
PPFIA3-207ENST00000602716 HHIPL2Q6UWX4 724 aa20.52■□□□□ 0.88
PPFIA3-207ENST00000602716 TMX3Q96JJ7 454 aa20.52■□□□□ 0.88
PPFIA3-207ENST00000602716 DDX4Q9NQI0 724 aaKnown RBP20.52■□□□□ 0.88
PPFIA3-207ENST00000602716 B4E1Z4 1266 aa20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 CDC42EP5Q6NZY7 148 aa20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 GIMAP6Q6P9H5 292 aa20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 ARHGAP27Q6ZUM4 889 aa20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 JDP2Q8WYK2 163 aa20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 MCM9Q9NXL9 1143 aa20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 GOLGA6L3A6NEY3 463 aa20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 WDHD1O75717 1129 aaPredicted RBP20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 CACNB3P54284 484 aa20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 EXOSC10Q01780 885 aaKnown RBP20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 RAB3GAP1Q15042 981 aa20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 CYB5R4Q7L1T6 521 aa20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 FAM43AQ8N2R8 423 aa20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 TNPO1Q92973 898 aaKnown RBP20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 ZDHHC15Q96MV8 337 aa20.51■□□□□ 0.87
PPFIA3-207ENST00000602716 ZNF541Q9H0D2 1346 aa20.5■□□□□ 0.87
PPFIA3-207ENST00000602716 DTNBO60941 627 aa20.5■□□□□ 0.87
PPFIA3-207ENST00000602716 AKNAD1Q5T1N1 836 aa20.5■□□□□ 0.87
PPFIA3-207ENST00000602716 DHX32Q7L7V1 743 aaKnown RBP20.5■□□□□ 0.87
PPFIA3-207ENST00000602716 STAG1Q8WVM7 1258 aa20.5■□□□□ 0.87
PPFIA3-207ENST00000602716 RBM5P52756 815 aaKnown RBP eCLIP20.49■□□□□ 0.87
PPFIA3-207ENST00000602716 ST3GAL1Q11201 340 aa20.49■□□□□ 0.87
PPFIA3-207ENST00000602716 NFIAQ12857 509 aa20.49■□□□□ 0.87
PPFIA3-207ENST00000602716 PICALMQ13492 652 aa20.49■□□□□ 0.87
PPFIA3-207ENST00000602716 CFAP100Q494V2 611 aa20.49■□□□□ 0.87
PPFIA3-207ENST00000602716 CIAPIN1Q6FI81 312 aa20.49■□□□□ 0.87
PPFIA3-207ENST00000602716 Q6ZUG5 572 aa20.49■□□□□ 0.87
PPFIA3-207ENST00000602716 NCOA7Q8NI08 942 aa20.49■□□□□ 0.87
PPFIA3-207ENST00000602716 GZF1Q9H116 711 aaPredicted RBP20.49■□□□□ 0.87
PPFIA3-207ENST00000602716 USP40Q9NVE5 1235 aa20.49■□□□□ 0.87
PPFIA3-207ENST00000602716 ANAPC4Q9UJX5 808 aa20.49■□□□□ 0.87
PPFIA3-207ENST00000602716 TPCN1Q9ULQ1 816 aa20.49■□□□□ 0.87
PPFIA3-207ENST00000602716 PRDM1O75626 825 aa20.49■□□□□ 0.87
PPFIA3-207ENST00000602716 PLCG2P16885 1265 aa20.48■□□□□ 0.87
PPFIA3-207ENST00000602716 RRP12Q5JTH9 1297 aaKnown RBP20.48■□□□□ 0.87
PPFIA3-207ENST00000602716 RALYLQ86SE5 291 aaKnown RBP20.48■□□□□ 0.87
PPFIA3-207ENST00000602716 ARPP21Q9UBL0 812 aaPredicted RBP20.48■□□□□ 0.87
PPFIA3-207ENST00000602716 SERPINA10Q9UK55 444 aa20.48■□□□□ 0.87
PPFIA3-207ENST00000602716 MYO3BQ8WXR4 1341 aa20.48■□□□□ 0.87
PPFIA3-207ENST00000602716 FOCADQ5VW36 1801 aa20.48■□□□□ 0.87
PPFIA3-207ENST00000602716 FZD9O00144 591 aa20.48■□□□□ 0.87
PPFIA3-207ENST00000602716 PRC1O43663 620 aa20.48■□□□□ 0.87
PPFIA3-207ENST00000602716 XRCC6P12956 609 aaKnown RBP eCLIP20.48■□□□□ 0.87
PPFIA3-207ENST00000602716 BRF1Q92994 677 aa20.48■□□□□ 0.87
PPFIA3-207ENST00000602716 DYNLL2Q96FJ2 89 aa20.48■□□□□ 0.87
PPFIA3-207ENST00000602716 PLCD1P51178 756 aa20.47■□□□□ 0.87
PPFIA3-207ENST00000602716 HDLBPQ00341 1268 aaKnown RBP20.47■□□□□ 0.87
PPFIA3-207ENST00000602716 SBK1Q52WX2 424 aa20.47■□□□□ 0.87
PPFIA3-207ENST00000602716 C12orf60Q5U649 245 aa20.47■□□□□ 0.87
PPFIA3-207ENST00000602716 SLC44A5Q8NCS7 719 aa20.47■□□□□ 0.87
PPFIA3-207ENST00000602716 KDM4AO75164 1064 aa20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 HMGB1P09429 215 aaKnown RBP20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 ME3Q16798 604 aa20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 MFSD6Q6ZSS7 791 aa20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 PRMT6Q96LA8 375 aaPredicted RBP20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 TOMM22Q9NS69 142 aa20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 LIMCH1Q9UPQ0 1083 aa20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 MCM2P49736 904 aa20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 CERS3Q8IU89 383 aa20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 ZFPM1Q8IX07 1006 aa20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 GBP4Q96PP9 640 aa20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 MRIQ9BWK5 157 aa20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 ALDH8A1Q9H2A2 487 aaPredicted RBP20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 TDRD3Q9H7E2 651 aaKnown RBP20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 SENP2Q9HC62 589 aa20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.46■□□□□ 0.87
PPFIA3-207ENST00000602716 ROBO3Q96MS0 1386 aa20.45■□□□□ 0.86
PPFIA3-207ENST00000602716 HSP90AA1P07900 732 aaKnown RBP20.45■□□□□ 0.86
PPFIA3-207ENST00000602716 NECAB1Q8N987 351 aa20.45■□□□□ 0.86
PPFIA3-207ENST00000602716 AGBL3Q8NEM8 1001 aa20.45■□□□□ 0.86
PPFIA3-207ENST00000602716 AGXT2Q9BYV1 514 aa20.45■□□□□ 0.86
PPFIA3-207ENST00000602716 EGFRP00533 1210 aa20.44■□□□□ 0.86
PPFIA3-207ENST00000602716 SLURP2P0DP57 97 aa20.44■□□□□ 0.86
PPFIA3-207ENST00000602716 MCM5P33992 734 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms