RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.76■□□□□ 0.75
TRIM28-206ENST00000595974 IDH1O75874 414 aaKnown RBP19.75■□□□□ 0.75
TRIM28-206ENST00000595974 PLCG2P16885 1265 aa19.75■□□□□ 0.75
TRIM28-206ENST00000595974 INHBEP58166 350 aa19.75■□□□□ 0.75
TRIM28-206ENST00000595974 PICALMQ13492 652 aa19.75■□□□□ 0.75
TRIM28-206ENST00000595974 ZFPM1Q8IX07 1006 aa19.75■□□□□ 0.75
TRIM28-206ENST00000595974 OPTNQ96CV9 577 aa19.75■□□□□ 0.75
TRIM28-206ENST00000595974 DCTPP1Q9H773 170 aa19.75■□□□□ 0.75
TRIM28-206ENST00000595974 DOCK1Q14185 1865 aa19.75■□□□□ 0.75
TRIM28-206ENST00000595974 GJA5P36382 358 aa19.74■□□□□ 0.75
TRIM28-206ENST00000595974 MAP3K12Q12852 859 aa19.74■□□□□ 0.75
TRIM28-206ENST00000595974 TTF1Q15361 905 aaPredicted RBP19.74■□□□□ 0.75
TRIM28-206ENST00000595974 MIGA2Q7L4E1 593 aa19.74■□□□□ 0.75
TRIM28-206ENST00000595974 ZSCAN29Q8IWY8 852 aaPredicted RBP19.74■□□□□ 0.75
TRIM28-206ENST00000595974 TEX11Q8IYF3 940 aa19.74■□□□□ 0.75
TRIM28-206ENST00000595974 CRBNQ96SW2 442 aa19.74■□□□□ 0.75
TRIM28-206ENST00000595974 SNCAIPQ9Y6H5 919 aa19.74■□□□□ 0.75
TRIM28-206ENST00000595974 NDUFB9Q9Y6M9 179 aa19.74■□□□□ 0.75
TRIM28-206ENST00000595974 SPDYE5A6NIY4 337 aa19.73■□□□□ 0.75
TRIM28-206ENST00000595974 PPP4CP60510 307 aa19.73■□□□□ 0.75
TRIM28-206ENST00000595974 SH3BP5LQ7L8J4 393 aa19.73■□□□□ 0.75
TRIM28-206ENST00000595974 ADGRA1Q86SQ6 560 aa19.73■□□□□ 0.75
TRIM28-206ENST00000595974 CERS3Q8IU89 383 aa19.73■□□□□ 0.75
TRIM28-206ENST00000595974 ANTXR1Q9H6X2 564 aa19.73■□□□□ 0.75
TRIM28-206ENST00000595974 AATFQ9NY61 560 aaKnown RBP eCLIP19.73■□□□□ 0.75
TRIM28-206ENST00000595974 ZNF112Q9UJU3 913 aa19.73■□□□□ 0.75
TRIM28-206ENST00000595974 PCDHB15Q9Y5E8 787 aa19.73■□□□□ 0.75
TRIM28-206ENST00000595974 MYH1P12882 1939 aa19.72■□□□□ 0.75
TRIM28-206ENST00000595974 DDTLA6NHG4 134 aaPredicted RBP19.72■□□□□ 0.75
TRIM28-206ENST00000595974 ALDH1A1P00352 501 aa19.72■□□□□ 0.75
TRIM28-206ENST00000595974 CYP7A1P22680 504 aa19.72■□□□□ 0.75
TRIM28-206ENST00000595974 ERO1BQ86YB8 467 aa19.72■□□□□ 0.75
TRIM28-206ENST00000595974 SH3RF3Q8TEJ3 882 aaPredicted RBP19.72■□□□□ 0.75
TRIM28-206ENST00000595974 ZKSCAN4Q969J2 545 aaPredicted RBP19.72■□□□□ 0.75
TRIM28-206ENST00000595974 OSBPL5Q9H0X9 879 aaPredicted RBP19.72■□□□□ 0.75
TRIM28-206ENST00000595974 BCL11AQ9H165 835 aa19.72■□□□□ 0.75
TRIM28-206ENST00000595974 SIPA1L1O43166 1804 aa19.72■□□□□ 0.75
TRIM28-206ENST00000595974 ATP5JP18859 108 aa19.71■□□□□ 0.75
TRIM28-206ENST00000595974 INPP5BP32019 993 aa19.71■□□□□ 0.75
TRIM28-206ENST00000595974 NOL9Q5SY16 702 aaKnown RBP19.71■□□□□ 0.75
TRIM28-206ENST00000595974 MAGEB6Q8N7X4 407 aa19.71■□□□□ 0.75
TRIM28-206ENST00000595974 OTUD5Q96G74 571 aa19.71■□□□□ 0.75
TRIM28-206ENST00000595974 DNAJC2Q99543 621 aaKnown RBP19.71■□□□□ 0.75
TRIM28-206ENST00000595974 CFHR5Q9BXR6 569 aa19.71■□□□□ 0.75
TRIM28-206ENST00000595974 ATAD5Q96QE3 1844 aa19.71■□□□□ 0.75
TRIM28-206ENST00000595974 TESPA1A2RU30 521 aaPredicted RBP19.7■□□□□ 0.74
TRIM28-206ENST00000595974 SMARCA5O60264 1052 aaPredicted RBP19.7■□□□□ 0.74
TRIM28-206ENST00000595974 MAP3K10Q02779 954 aa19.7■□□□□ 0.74
TRIM28-206ENST00000595974 AAMPQ13685 434 aa19.7■□□□□ 0.74
TRIM28-206ENST00000595974 IFFO2Q5TF58 517 aa19.7■□□□□ 0.74
TRIM28-206ENST00000595974 IFNL1Q8IU54 200 aa19.7■□□□□ 0.74
TRIM28-206ENST00000595974 CNKSR2Q8WXI2 1034 aa19.7■□□□□ 0.74
TRIM28-206ENST00000595974 PTPRFP10586 1907 aa19.69■□□□□ 0.74
TRIM28-206ENST00000595974 GOLIM4O00461 696 aa19.69■□□□□ 0.74
TRIM28-206ENST00000595974 GTF2A2P52657 109 aa19.69■□□□□ 0.74
TRIM28-206ENST00000595974 PPIL2Q13356 520 aa19.69■□□□□ 0.74
TRIM28-206ENST00000595974 MS4A4AQ96JQ5 239 aa19.69■□□□□ 0.74
TRIM28-206ENST00000595974 NAV1Q8NEY1 1877 aa19.69■□□□□ 0.74
TRIM28-206ENST00000595974 PHIPQ8WWQ0 1821 aa19.68■□□□□ 0.74
TRIM28-206ENST00000595974 IGF2BP3O00425 579 aaKnown RBP eCLIP19.68■□□□□ 0.74
TRIM28-206ENST00000595974 TBC1D12O60347 775 aa19.68■□□□□ 0.74
TRIM28-206ENST00000595974 PPATQ06203 517 aa19.68■□□□□ 0.74
TRIM28-206ENST00000595974 NOM1Q5C9Z4 860 aaKnown RBP19.68■□□□□ 0.74
TRIM28-206ENST00000595974 OTUD7BQ6GQQ9 843 aa19.68■□□□□ 0.74
TRIM28-206ENST00000595974 GPATCH3Q96I76 525 aa19.68■□□□□ 0.74
TRIM28-206ENST00000595974 HAUS7Q99871 368 aa19.68■□□□□ 0.74
TRIM28-206ENST00000595974 DHX36Q9H2U1 1008 aaKnown RBP19.68■□□□□ 0.74
TRIM28-206ENST00000595974 BOLA2Q9H3K6 86 aa19.68■□□□□ 0.74
TRIM28-206ENST00000595974 PAG1Q9NWQ8 432 aa19.68■□□□□ 0.74
TRIM28-206ENST00000595974 FLT1P17948 1338 aa19.68■□□□□ 0.74
TRIM28-206ENST00000595974 DDX60LQ5H9U9 1706 aaKnown RBP19.68■□□□□ 0.74
TRIM28-206ENST00000595974 PHF20L1A8MW92 1017 aa19.67■□□□□ 0.74
TRIM28-206ENST00000595974 TBC1D8O95759 1140 aa19.67■□□□□ 0.74
TRIM28-206ENST00000595974 TGFBRAP1Q8WUH2 860 aa19.67■□□□□ 0.74
TRIM28-206ENST00000595974 CCL15-CCL14A0A0B4J2E2 113 aa19.66■□□□□ 0.74
TRIM28-206ENST00000595974 IRF6O14896 467 aa19.66■□□□□ 0.74
TRIM28-206ENST00000595974 PDE6AP16499 860 aa19.66■□□□□ 0.74
TRIM28-206ENST00000595974 DYNLL1P63167 89 aaKnown RBP19.66■□□□□ 0.74
TRIM28-206ENST00000595974 SNAPC2Q13487 334 aa19.66■□□□□ 0.74
TRIM28-206ENST00000595974 CCL15Q16663 113 aa19.66■□□□□ 0.74
TRIM28-206ENST00000595974 SLC9C2Q5TAH2 1124 aa19.66■□□□□ 0.74
TRIM28-206ENST00000595974 MAPKAPK5Q8IW41 473 aa19.66■□□□□ 0.74
TRIM28-206ENST00000595974 SCYL3Q8IZE3 742 aa19.66■□□□□ 0.74
TRIM28-206ENST00000595974 MIGA1Q8NAN2 632 aa19.66■□□□□ 0.74
TRIM28-206ENST00000595974 BRI3BPQ8WY22 251 aa19.66■□□□□ 0.74
TRIM28-206ENST00000595974 ECHDC1Q9NTX5 307 aa19.66■□□□□ 0.74
TRIM28-206ENST00000595974 HERC5Q9UII4 1024 aaKnown RBP19.66■□□□□ 0.74
TRIM28-206ENST00000595974 CETPP11597 493 aa19.65■□□□□ 0.74
TRIM28-206ENST00000595974 EDC3Q96F86 508 aaKnown RBP19.65■□□□□ 0.74
TRIM28-206ENST00000595974 PTPN18Q99952 460 aa19.65■□□□□ 0.74
TRIM28-206ENST00000595974 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.65■□□□□ 0.74
TRIM28-206ENST00000595974 PICK1Q9NRD5 415 aa19.65■□□□□ 0.74
TRIM28-206ENST00000595974 CTNND1O60716 968 aaKnown RBP19.64■□□□□ 0.73
TRIM28-206ENST00000595974 HDAC1Q13547 482 aaPredicted RBP19.64■□□□□ 0.73
TRIM28-206ENST00000595974 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.64■□□□□ 0.732e-8■■□□□ 12.6
TRIM28-206ENST00000595974 PI4KBQ9UBF8 816 aa19.64■□□□□ 0.73
TRIM28-206ENST00000595974 KCNH4Q9UQ05 1017 aa19.64■□□□□ 0.73
TRIM28-206ENST00000595974 ZNF532Q9HCE3 1301 aa19.63■□□□□ 0.73
TRIM28-206ENST00000595974 TCRBV5S4A2TA0A5A2 114 aa19.63■□□□□ 0.73
TRIM28-206ENST00000595974 GPR25O00155 361 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms