RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 KIF4BQ2VIQ3 1234 aa12.77□□□□□ -0.37
SS18-213ENST00000579640 MAPKAPK5Q8IW41 473 aa12.77□□□□□ -0.37
SS18-213ENST00000579640 TDRD3Q9H7E2 651 aaKnown RBP12.77□□□□□ -0.37
SS18-213ENST00000579640 MCM9Q9NXL9 1143 aa12.77□□□□□ -0.37
SS18-213ENST00000579640 ZNF70Q9UC06 446 aaPredicted RBP12.77□□□□□ -0.37
SS18-213ENST00000579640 ANAPC4Q9UJX5 808 aa12.77□□□□□ -0.37
SS18-213ENST00000579640 SNX14Q9Y5W7 946 aa12.77□□□□□ -0.37
SS18-213ENST00000579640 BAZ2AQ9UIF9 1905 aaKnown RBP12.77□□□□□ -0.37
SS18-213ENST00000579640 LAMB1P07942 1786 aa12.77□□□□□ -0.37
SS18-213ENST00000579640 DDX60LQ5H9U9 1706 aaKnown RBP12.76□□□□□ -0.37
SS18-213ENST00000579640 SHTN1A0MZ66 631 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 ENTPD3O75355 529 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 CTR9Q6PD62 1173 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 ADARB2Q9NS39 739 aaKnown RBP12.76□□□□□ -0.37
SS18-213ENST00000579640 PALD1Q9ULE6 856 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 COL2A1P02458 1487 aaPredicted RBP12.76□□□□□ -0.37
SS18-213ENST00000579640 MYH1P12882 1939 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 USP17L12C9JPN9 530 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 USP17L21D6R901 530 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 SLC3A2P08195 630 aaKnown RBP12.76□□□□□ -0.37
SS18-213ENST00000579640 PCP11498 1178 aaKnown RBP12.76□□□□□ -0.37
SS18-213ENST00000579640 PSMA5P28066 241 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 PPARAQ07869 468 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 PICALMQ13492 652 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 TBC1D10BQ4KMP7 808 aaPredicted RBP12.76□□□□□ -0.37
SS18-213ENST00000579640 SAMD7Q7Z3H4 446 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 RASEFQ8IZ41 740 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 TM6SF1Q9BZW5 370 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 OSBPL5Q9H0X9 879 aaPredicted RBP12.76□□□□□ -0.37
SS18-213ENST00000579640 TAOK2Q9UL54 1235 aa12.76□□□□□ -0.37
SS18-213ENST00000579640 SCN4AP35499 1836 aa12.75□□□□□ -0.37
SS18-213ENST00000579640 IQCA1LA6NCM1 817 aa12.75□□□□□ -0.37
SS18-213ENST00000579640 MINDY4BA8MYZ0 360 aa12.75□□□□□ -0.37
SS18-213ENST00000579640 POLR3DP05423 398 aaPredicted RBP12.75□□□□□ -0.37
SS18-213ENST00000579640 EPS15P42566 896 aa12.75□□□□□ -0.37
SS18-213ENST00000579640 TNFAIP1Q13829 316 aa12.75□□□□□ -0.37
SS18-213ENST00000579640 RABEP1Q15276 862 aa12.75□□□□□ -0.37
SS18-213ENST00000579640 NBPF9Q3BBW0 867 aa12.75□□□□□ -0.37
SS18-213ENST00000579640 RBM26Q5T8P6 1007 aaKnown RBP12.75□□□□□ -0.37
SS18-213ENST00000579640 C12orf60Q5U649 245 aa12.75□□□□□ -0.37
SS18-213ENST00000579640 TTC6Q86TZ1 520 aa12.75□□□□□ -0.37
SS18-213ENST00000579640 FAM83AQ86UY5 434 aa12.75□□□□□ -0.37
SS18-213ENST00000579640 DHX36Q9H2U1 1008 aaKnown RBP12.75□□□□□ -0.37
SS18-213ENST00000579640 RNF41Q9H4P4 317 aaPredicted RBP12.75□□□□□ -0.37
SS18-213ENST00000579640 DDX4Q9NQI0 724 aaKnown RBP12.75□□□□□ -0.37
SS18-213ENST00000579640 HACL1Q9UJ83 578 aa12.75□□□□□ -0.37
SS18-213ENST00000579640 WDR90Q96KV7 1748 aa12.75□□□□□ -0.37
SS18-213ENST00000579640 CLRN2A0PK11 232 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 TNNI2P48788 182 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 NT5C2P49902 561 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 HAND2P61296 217 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 NFIAQ12857 509 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 KIF2CQ99661 725 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 FAM198AQ9UFP1 575 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 ATRNL1Q5VV63 1379 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 ROBO3Q96MS0 1386 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 E7EWF7 191 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 EGFRP00533 1210 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 HLA-DOAP06340 250 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 HMGB1P09429 215 aaKnown RBP12.74□□□□□ -0.37
SS18-213ENST00000579640 CACNB3P54284 484 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 TRDNQ13061 729 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 AKNAD1Q5T1N1 836 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 TRPM4Q8TD43 1214 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 STAG1Q8WVM7 1258 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 FAM151AQ8WW52 585 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 CNNM2Q9H8M5 875 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 VEZTQ9HBM0 779 aa12.74□□□□□ -0.37
SS18-213ENST00000579640 PDE4BQ07343 736 aa12.73□□□□□ -0.37
SS18-213ENST00000579640 MFSD6Q6ZSS7 791 aa12.73□□□□□ -0.37
SS18-213ENST00000579640 USP50Q70EL3 339 aaPredicted RBP12.73□□□□□ -0.37
SS18-213ENST00000579640 APOBEC3FQ8IUX4 373 aaKnown RBP12.73□□□□□ -0.37
SS18-213ENST00000579640 JAKMIP1Q96N16 626 aaKnown RBP12.73□□□□□ -0.37
SS18-213ENST00000579640 NEK1Q96PY6 1258 aa12.73□□□□□ -0.37
SS18-213ENST00000579640 NBPF3Q9H094 633 aa12.73□□□□□ -0.37
SS18-213ENST00000579640 ZNF287Q9HBT7 754 aa12.73□□□□□ -0.37
SS18-213ENST00000579640 SAP30BPQ9UHR5 308 aaKnown RBP12.73□□□□□ -0.37
SS18-213ENST00000579640 TCP10L2B9ZVM9 353 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 FGRP09769 529 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 CYP2D6P10635 497 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 EPHX2P34913 555 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 CTDSPL2Q05D32 466 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 TCP10Q12799 353 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 STOX1Q6ZVD7 989 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 RALYLQ86SE5 291 aaKnown RBP12.72□□□□□ -0.37
SS18-213ENST00000579640 TBC1D10CQ8IV04 446 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 NCOA7Q8NI08 942 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 KRT23Q9C075 422 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 EHD4Q9H223 541 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 ZSWIM6Q9HCJ5 1215 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 RBM19Q9Y4C8 960 aaKnown RBP12.72□□□□□ -0.37
SS18-213ENST00000579640 PITPNM2Q9BZ72 1349 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 CYP2D7A0A087X1C5 515 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 CASTP20810 708 aaKnown RBP12.72□□□□□ -0.37
SS18-213ENST00000579640 ADCK5Q3MIX3 580 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 BLOC1S2Q6QNY1 142 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 PI4KBQ9UBF8 816 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 CYP46A1Q9Y6A2 500 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 TAF6LQ9Y6J9 622 aa12.72□□□□□ -0.37
SS18-213ENST00000579640 CNTNAP1P78357 1384 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 142.4 ms