RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 TEX11Q8IYF3 940 aa11.37□□□□□ -0.59
LDLR-211ENST00000560173 MAGEB6Q8N7X4 407 aa11.37□□□□□ -0.59
LDLR-211ENST00000560173 SH3RF3Q8TEJ3 882 aaPredicted RBP11.37□□□□□ -0.59
LDLR-211ENST00000560173 NOL10Q9BSC4 688 aaKnown RBP11.37□□□□□ -0.59
LDLR-211ENST00000560173 BEGAINQ9BUH8 593 aa11.37□□□□□ -0.59
LDLR-211ENST00000560173 DDX4Q9NQI0 724 aaKnown RBP11.37□□□□□ -0.59
LDLR-211ENST00000560173 ANGEL1Q9UNK9 670 aaKnown RBP11.37□□□□□ -0.59
LDLR-211ENST00000560173 TTC41PQ6P2S7 1318 aa11.36□□□□□ -0.59
LDLR-211ENST00000560173 PDE4DIPQ5VU43 2346 aa11.36□□□□□ -0.59
LDLR-211ENST00000560173 AOC2O75106 756 aa11.36□□□□□ -0.59
LDLR-211ENST00000560173 USP2O75604 605 aaPredicted RBP11.36□□□□□ -0.59
LDLR-211ENST00000560173 BAG3O95817 575 aa11.36□□□□□ -0.59
LDLR-211ENST00000560173 PLCG2P16885 1265 aa11.36□□□□□ -0.59
LDLR-211ENST00000560173 MX1P20591 662 aa11.36□□□□□ -0.59
LDLR-211ENST00000560173 IREB2P48200 963 aaKnown RBP11.36□□□□□ -0.59
LDLR-211ENST00000560173 SH3BP5LQ7L8J4 393 aa11.36□□□□□ -0.59
LDLR-211ENST00000560173 RASAL3Q86YV0 1011 aa11.36□□□□□ -0.59
LDLR-211ENST00000560173 PI4K2BQ8TCG2 481 aa11.36□□□□□ -0.59
LDLR-211ENST00000560173 CCDC102AQ96A19 550 aa11.36□□□□□ -0.59
LDLR-211ENST00000560173 MCOLN1Q9GZU1 580 aa11.36□□□□□ -0.59
LDLR-211ENST00000560173 AATFQ9NY61 560 aaKnown RBP eCLIP11.36□□□□□ -0.59
LDLR-211ENST00000560173 ZBTB47Q9UFB7 747 aaPredicted RBP11.36□□□□□ -0.59
LDLR-211ENST00000560173 TSKSQ9UJT2 592 aa11.36□□□□□ -0.59
LDLR-211ENST00000560173 ATRNL1Q5VV63 1379 aa11.36□□□□□ -0.59
LDLR-211ENST00000560173 COL2A1P02458 1487 aaPredicted RBP11.36□□□□□ -0.59
LDLR-211ENST00000560173 TCRBV5S4A2TA0A5A2 114 aa11.35□□□□□ -0.59
LDLR-211ENST00000560173 UNCXA6NJT0 531 aa11.35□□□□□ -0.59
LDLR-211ENST00000560173 MAP2K2P36507 400 aa11.35□□□□□ -0.59
LDLR-211ENST00000560173 DYNLL1P63167 89 aaKnown RBP11.35□□□□□ -0.59
LDLR-211ENST00000560173 NOGQ13253 232 aa11.35□□□□□ -0.59
LDLR-211ENST00000560173 PICALMQ13492 652 aa11.35□□□□□ -0.59
LDLR-211ENST00000560173 SLC9C2Q5TAH2 1124 aa11.35□□□□□ -0.59
LDLR-211ENST00000560173 MIGA1Q8NAN2 632 aa11.35□□□□□ -0.59
LDLR-211ENST00000560173 HOOK2Q96ED9 719 aa11.35□□□□□ -0.59
LDLR-211ENST00000560173 CLMNQ96JQ2 1002 aa11.35□□□□□ -0.59
LDLR-211ENST00000560173 OTOFQ9HC10 1997 aa11.35□□□□□ -0.59
LDLR-211ENST00000560173 ZNF532Q9HCE3 1301 aa11.35□□□□□ -0.59
LDLR-211ENST00000560173 DDTLA6NHG4 134 aaPredicted RBP11.34□□□□□ -0.59
LDLR-211ENST00000560173 ERC2O15083 957 aa11.34□□□□□ -0.59
LDLR-211ENST00000560173 GLRX3O76003 335 aaKnown RBP11.34□□□□□ -0.59
LDLR-211ENST00000560173 ADD2P35612 726 aa11.34□□□□□ -0.59
LDLR-211ENST00000560173 NUCB1Q02818 461 aa11.34□□□□□ -0.59
LDLR-211ENST00000560173 DCAF15Q66K64 600 aa11.34□□□□□ -0.59
LDLR-211ENST00000560173 B4GALNT3Q6L9W6 998 aa11.34□□□□□ -0.59
LDLR-211ENST00000560173 CERS3Q8IU89 383 aa11.34□□□□□ -0.59
LDLR-211ENST00000560173 ANKRD13AQ8IZ07 590 aa11.34□□□□□ -0.59
LDLR-211ENST00000560173 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.34□□□□□ -0.59
LDLR-211ENST00000560173 CSRNP1Q96S65 589 aa11.34□□□□□ -0.59
LDLR-211ENST00000560173 ZIC5Q96T25 663 aa11.34□□□□□ -0.59
LDLR-211ENST00000560173 RIOK1Q9BRS2 568 aaKnown RBP11.34□□□□□ -0.59
LDLR-211ENST00000560173 LNPKQ9C0E8 428 aa11.34□□□□□ -0.59
LDLR-211ENST00000560173 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.34□□□□□ -0.595e-11■■□□□ 14.5
LDLR-211ENST00000560173 OSBPL5Q9H0X9 879 aaPredicted RBP11.34□□□□□ -0.59
LDLR-211ENST00000560173 STAP2Q9UGK3 403 aa11.34□□□□□ -0.59
LDLR-211ENST00000560173 FLT1P17948 1338 aa11.34□□□□□ -0.59
LDLR-211ENST00000560173 PDE1AP54750 535 aa11.33□□□□□ -0.6
LDLR-211ENST00000560173 MAP3K9P80192 1104 aa11.33□□□□□ -0.6
LDLR-211ENST00000560173 UBE3CQ15386 1083 aa11.33□□□□□ -0.6
LDLR-211ENST00000560173 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.33□□□□□ -0.6
LDLR-211ENST00000560173 MIGA2Q7L4E1 593 aa11.33□□□□□ -0.6
LDLR-211ENST00000560173 CHD1LQ86WJ1 897 aa11.33□□□□□ -0.6
LDLR-211ENST00000560173 MAPKAPK5Q8IW41 473 aa11.33□□□□□ -0.6
LDLR-211ENST00000560173 ZSCAN29Q8IWY8 852 aaPredicted RBP11.33□□□□□ -0.6
LDLR-211ENST00000560173 KBTBD3Q8NAB2 608 aa11.33□□□□□ -0.6
LDLR-211ENST00000560173 WRNIP1Q96S55 665 aa11.33□□□□□ -0.6
LDLR-211ENST00000560173 ZNF341Q9BYN7 854 aa11.33□□□□□ -0.6
LDLR-211ENST00000560173 FOCADQ5VW36 1801 aa11.32□□□□□ -0.6
LDLR-211ENST00000560173 CDK5RAP2Q96SN8 1893 aa11.32□□□□□ -0.6
LDLR-211ENST00000560173 MAGEB6P1A0A0J9YX57 407 aa11.32□□□□□ -0.6
LDLR-211ENST00000560173 CHGBP05060 677 aa11.32□□□□□ -0.6
LDLR-211ENST00000560173 KIF23Q02241 960 aaPredicted RBP11.32□□□□□ -0.6
LDLR-211ENST00000560173 MAP3K10Q02779 954 aa11.32□□□□□ -0.6
LDLR-211ENST00000560173 VGLL4Q14135 290 aa11.32□□□□□ -0.6
LDLR-211ENST00000560173 SLFNL1Q499Z3 407 aa11.32□□□□□ -0.6
LDLR-211ENST00000560173 SPRYD7Q5W111 196 aa11.32□□□□□ -0.6
LDLR-211ENST00000560173 ZSCAN25Q6NSZ9 544 aa11.32□□□□□ -0.6
LDLR-211ENST00000560173 TGFBRAP1Q8WUH2 860 aa11.32□□□□□ -0.6
LDLR-211ENST00000560173 SLC10A4Q96EP9 437 aa11.32□□□□□ -0.6
LDLR-211ENST00000560173 WNK4Q96J92 1243 aa11.32□□□□□ -0.6
LDLR-211ENST00000560173 ZNF112Q9UJU3 913 aa11.32□□□□□ -0.6
LDLR-211ENST00000560173 MYH7P12883 1935 aa11.31□□□□□ -0.6
LDLR-211ENST00000560173 INPP5BP32019 993 aa11.31□□□□□ -0.6
LDLR-211ENST00000560173 DGKZQ13574 1117 aa11.31□□□□□ -0.6
LDLR-211ENST00000560173 LCORLQ8N3X6 602 aa11.31□□□□□ -0.6
LDLR-211ENST00000560173 ELP3Q9H9T3 547 aa11.31□□□□□ -0.6
LDLR-211ENST00000560173 CSADQ9Y600 493 aa11.31□□□□□ -0.6
LDLR-211ENST00000560173 SNCAIPQ9Y6H5 919 aa11.31□□□□□ -0.6
LDLR-211ENST00000560173 AK9Q5TCS8 1911 aa11.31□□□□□ -0.6
LDLR-211ENST00000560173 DDX60LQ5H9U9 1706 aaKnown RBP11.3□□□□□ -0.6
LDLR-211ENST00000560173 PHF20L1A8MW92 1017 aa11.3□□□□□ -0.6
LDLR-211ENST00000560173 CA12O43570 354 aa11.3□□□□□ -0.6
LDLR-211ENST00000560173 TBC1D12O60347 775 aa11.3□□□□□ -0.6
LDLR-211ENST00000560173 MBD4O95243 580 aa11.3□□□□□ -0.6
LDLR-211ENST00000560173 SLURP2P0DP57 97 aa11.3□□□□□ -0.6
LDLR-211ENST00000560173 ZBTB48P10074 688 aaPredicted RBP11.3□□□□□ -0.6
LDLR-211ENST00000560173 GJA5P36382 358 aa11.3□□□□□ -0.6
LDLR-211ENST00000560173 USP5P45974 858 aa11.3□□□□□ -0.6
LDLR-211ENST00000560173 MKRN3Q13064 507 aaKnown RBP11.3□□□□□ -0.6
LDLR-211ENST00000560173 NOL9Q5SY16 702 aaKnown RBP11.3□□□□□ -0.6
LDLR-211ENST00000560173 PLEKHM2Q8IWE5 1019 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms