RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 FKBP1BP68106 108 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 TCP10Q12799 353 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 NMIQ13287 307 aaPredicted RBP12.08□□□□□ -0.48
USP3-216ENST00000559873 MCMDC2Q4G0Z9 681 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 DCAF15Q66K64 600 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 TGFBRAP1Q8WUH2 860 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 OSBP2Q969R2 916 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 CSRNP1Q96S65 589 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 TRIM34Q9BYJ4 488 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 ZNF408Q9H9D4 720 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 FAM198AQ9UFP1 575 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 SLC4A4Q9Y6R1 1079 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 NAV1Q8NEY1 1877 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 CCDC171Q6TFL3 1326 aa12.08□□□□□ -0.48
USP3-216ENST00000559873 A0A0D9SFI3 127 aa12.07□□□□□ -0.48
USP3-216ENST00000559873 M0R2C6 588 aa12.07□□□□□ -0.48
USP3-216ENST00000559873 TRAF5O00463 557 aa12.07□□□□□ -0.48
USP3-216ENST00000559873 PPP1R12BO60237 982 aaPredicted RBP12.07□□□□□ -0.48
USP3-216ENST00000559873 CDC45O75419 566 aa12.07□□□□□ -0.48
USP3-216ENST00000559873 CELF2O95319 508 aaKnown RBP12.07□□□□□ -0.48
USP3-216ENST00000559873 TTLL12Q14166 644 aaPredicted RBP12.07□□□□□ -0.48
USP3-216ENST00000559873 GIMAP6Q6P9H5 292 aa12.07□□□□□ -0.48
USP3-216ENST00000559873 CWC27Q6UX04 472 aaKnown RBP12.07□□□□□ -0.48
USP3-216ENST00000559873 TTC6Q86TZ1 520 aa12.07□□□□□ -0.48
USP3-216ENST00000559873 SKAP1Q86WV1 359 aa12.07□□□□□ -0.48
USP3-216ENST00000559873 STRBPQ96SI9 672 aaKnown RBP12.07□□□□□ -0.48
USP3-216ENST00000559873 TMEM39BQ9GZU3 492 aa12.07□□□□□ -0.48
USP3-216ENST00000559873 ARPP21Q9UBL0 812 aaPredicted RBP12.07□□□□□ -0.48
USP3-216ENST00000559873 TAOK2Q9UL54 1235 aa12.07□□□□□ -0.48
USP3-216ENST00000559873 FOCADQ5VW36 1801 aa12.07□□□□□ -0.48
USP3-216ENST00000559873 PAPPA2Q9BXP8 1791 aa12.06□□□□□ -0.48
USP3-216ENST00000559873 CHGBP05060 677 aa12.06□□□□□ -0.48
USP3-216ENST00000559873 APPP05067 770 aa12.06□□□□□ -0.48
USP3-216ENST00000559873 TDO2P48775 406 aa12.06□□□□□ -0.48
USP3-216ENST00000559873 SLFNL1Q499Z3 407 aa12.06□□□□□ -0.48
USP3-216ENST00000559873 ARMC9Q7Z3E5 817 aa12.06□□□□□ -0.48
USP3-216ENST00000559873 C2orf69Q8N8R5 385 aa12.06□□□□□ -0.48
USP3-216ENST00000559873 SDR42E1Q8WUS8 393 aa12.06□□□□□ -0.48
USP3-216ENST00000559873 FAM227BQ96M60 508 aa12.06□□□□□ -0.48
USP3-216ENST00000559873 GBA2Q9HCG7 927 aaPredicted RBP12.06□□□□□ -0.48
USP3-216ENST00000559873 DDX4Q9NQI0 724 aaKnown RBP12.06□□□□□ -0.48
USP3-216ENST00000559873 MCM9Q9NXL9 1143 aa12.06□□□□□ -0.48
USP3-216ENST00000559873 SCAF8Q9UPN6 1271 aaKnown RBP12.06□□□□□ -0.48
USP3-216ENST00000559873 TMEM88BA6NKF7 163 aa12.05□□□□□ -0.48
USP3-216ENST00000559873 POLR3DP05423 398 aaPredicted RBP12.05□□□□□ -0.48
USP3-216ENST00000559873 CHMLP26374 656 aa12.05□□□□□ -0.48
USP3-216ENST00000559873 IREB2P48200 963 aaKnown RBP12.05□□□□□ -0.48
USP3-216ENST00000559873 APLP1P51693 650 aa12.05□□□□□ -0.48
USP3-216ENST00000559873 C1QTNF8P60827 252 aa12.05□□□□□ -0.48
USP3-216ENST00000559873 NBPF12Q5TAG4 269 aaPredicted RBP12.05□□□□□ -0.48
USP3-216ENST00000559873 CRACR2BQ8N4Y2 399 aaPredicted RBP12.05□□□□□ -0.48
USP3-216ENST00000559873 TEPSINQ96N21 525 aa12.05□□□□□ -0.48
USP3-216ENST00000559873 SEC62Q99442 399 aaKnown RBP12.05□□□□□ -0.48
USP3-216ENST00000559873 ZNF341Q9BYN7 854 aa12.05□□□□□ -0.48
USP3-216ENST00000559873 NAPBQ9H115 298 aa12.05□□□□□ -0.48
USP3-216ENST00000559873 DCP1AQ9NPI6 582 aaPredicted RBP12.05□□□□□ -0.48
USP3-216ENST00000559873 PI4KBQ9UBF8 816 aa12.05□□□□□ -0.48
USP3-216ENST00000559873 HERC5Q9UII4 1024 aaKnown RBP12.05□□□□□ -0.48
USP3-216ENST00000559873 TRPM7Q96QT4 1865 aa12.05□□□□□ -0.48
USP3-216ENST00000559873 POLR2AP24928 1970 aaKnown RBP12.05□□□□□ -0.48
USP3-216ENST00000559873 CDK5RAP2Q96SN8 1893 aa12.04□□□□□ -0.48
USP3-216ENST00000559873 DDX60LQ5H9U9 1706 aaKnown RBP12.04□□□□□ -0.48
USP3-216ENST00000559873 EIF5BO60841 1220 aaKnown RBP12.04□□□□□ -0.48
USP3-216ENST00000559873 CCDC129Q6ZRS4 1044 aa12.04□□□□□ -0.48
USP3-216ENST00000559873 EHD4Q9H223 541 aa12.04□□□□□ -0.48
USP3-216ENST00000559873 SAP30BPQ9UHR5 308 aaKnown RBP12.04□□□□□ -0.48
USP3-216ENST00000559873 ABT1Q9ULW3 272 aaKnown RBP12.04□□□□□ -0.48
USP3-216ENST00000559873 ZMYM6O95789 1325 aa12.04□□□□□ -0.48
USP3-216ENST00000559873 SSC5DA1L4H1 1573 aa12.04□□□□□ -0.48
USP3-216ENST00000559873 DDTLA6NHG4 134 aaPredicted RBP12.03□□□□□ -0.48
USP3-216ENST00000559873 UNCXA6NJT0 531 aa12.03□□□□□ -0.48
USP3-216ENST00000559873 PATL2C9JE40 543 aaKnown RBP12.03□□□□□ -0.48
USP3-216ENST00000559873 PRKAB2O43741 272 aa12.03□□□□□ -0.48
USP3-216ENST00000559873 TBC1D12O60347 775 aa12.03□□□□□ -0.48
USP3-216ENST00000559873 SLC3A2P08195 630 aaKnown RBP12.03□□□□□ -0.48
USP3-216ENST00000559873 PRAMEF18Q5VWM3 479 aa12.03□□□□□ -0.48
USP3-216ENST00000559873 KIAA1211Q6ZU35 1233 aa12.03□□□□□ -0.48
USP3-216ENST00000559873 FOXP4Q8IVH2 680 aaPredicted RBP12.03□□□□□ -0.48
USP3-216ENST00000559873 ZNF287Q9HBT7 754 aa12.03□□□□□ -0.48
USP3-216ENST00000559873 CREBZFQ9NS37 354 aa12.03□□□□□ -0.48
USP3-216ENST00000559873 SERPINB13Q9UIV8 391 aa12.03□□□□□ -0.48
USP3-216ENST00000559873 PALD1Q9ULE6 856 aa12.03□□□□□ -0.48
USP3-216ENST00000559873 MYH1P12882 1939 aa12.02□□□□□ -0.49
USP3-216ENST00000559873 GSG1L2A8MUP6 293 aa12.02□□□□□ -0.49
USP3-216ENST00000559873 SGSM2O43147 1006 aa12.02□□□□□ -0.49
USP3-216ENST00000559873 HSPA6P17066 643 aa12.02□□□□□ -0.49
USP3-216ENST00000559873 MAP3K11Q16584 847 aa12.02□□□□□ -0.49
USP3-216ENST00000559873 SBK1Q52WX2 424 aa12.02□□□□□ -0.49
USP3-216ENST00000559873 ZNF589Q86UQ0 364 aaPredicted RBP12.02□□□□□ -0.49
USP3-216ENST00000559873 ZFPM1Q8IX07 1006 aa12.02□□□□□ -0.49
USP3-216ENST00000559873 ANKRD13AQ8IZ07 590 aa12.02□□□□□ -0.49
USP3-216ENST00000559873 IFNL3Q8IZI9 196 aa12.02□□□□□ -0.49
USP3-216ENST00000559873 DSCC1Q9BVC3 393 aa12.02□□□□□ -0.49
USP3-216ENST00000559873 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.02□□□□□ -0.492e-6■■■□□ 18.4
USP3-216ENST00000559873 SWAP70Q9UH65 585 aa12.02□□□□□ -0.49
USP3-216ENST00000559873 MKRN1Q9UHC7 482 aaKnown RBP12.02□□□□□ -0.49
USP3-216ENST00000559873 CTNNA3Q9UI47 895 aa12.02□□□□□ -0.49
USP3-216ENST00000559873 ANGEL1Q9UNK9 670 aaKnown RBP12.02□□□□□ -0.49
USP3-216ENST00000559873 CSADQ9Y600 493 aa12.02□□□□□ -0.49
USP3-216ENST00000559873 LAMB1P07942 1786 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms