RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 GTF2IP78347 998 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 KRT85P78386 507 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 AOC3Q16853 763 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 CCDC93Q567U6 631 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 CC2D2BQ6DHV5 1058 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 USP48Q86UV5 1035 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 CRNKL1Q9BZJ0 848 aaKnown RBP19.73■□□□□ 0.75
LDLR-206ENST00000557958 ZSCAN16Q9H4T2 348 aaPredicted RBP19.73■□□□□ 0.75
LDLR-206ENST00000557958 BCS1LQ9Y276 419 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 LRRC37AA6NMS7 1700 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 GOLGB1Q14789 3259 aaKnown RBP19.73■□□□□ 0.75
LDLR-206ENST00000557958 SH2B2O14492 632 aaPredicted RBP19.73■□□□□ 0.75
LDLR-206ENST00000557958 PCP11498 1178 aaKnown RBP19.73■□□□□ 0.75
LDLR-206ENST00000557958 GSTO1P78417 241 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 GPT2Q8TD30 523 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 DDX11Q96FC9 970 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 CHAMP1Q96JM3 812 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 ANAPC4Q9UJX5 808 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 CNPY2Q9Y2B0 182 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 CDKL5O76039 1030 aa19.72■□□□□ 0.75
LDLR-206ENST00000557958 CTDSPL2Q05D32 466 aa19.72■□□□□ 0.75
LDLR-206ENST00000557958 PPARAQ07869 468 aa19.72■□□□□ 0.75
LDLR-206ENST00000557958 CPLX2Q6PUV4 134 aaKnown RBP19.72■□□□□ 0.75
LDLR-206ENST00000557958 RTKN2Q8IZC4 609 aa19.72■□□□□ 0.75
LDLR-206ENST00000557958 ERICH2A1L162 156 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 LDHBP07195 334 aaKnown RBP19.71■□□□□ 0.75
LDLR-206ENST00000557958 LIFRP42702 1097 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 MRE11P49959 708 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 UBE2HP62256 183 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 CYB5R4Q7L1T6 521 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 NLGN2Q8NFZ4 835 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 NCOA5Q9HCD5 579 aaKnown RBP19.71■□□□□ 0.75
LDLR-206ENST00000557958 TOMM22Q9NS69 142 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 PPIP5K2O43314 1243 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 KDM4AO75164 1064 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 CTDNEP1O95476 244 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 DNM1Q05193 864 aaKnown RBP19.71■□□□□ 0.75
LDLR-206ENST00000557958 TMEM67Q5HYA8 995 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 SYNE3Q6ZMZ3 975 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 NFXL1Q6ZNB6 911 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 SGMS1Q86VZ5 419 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 CERS3Q8IU89 383 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 SUPT20HQ8NEM7 779 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 SDR42E1Q8WUS8 393 aa19.71■□□□□ 0.75
LDLR-206ENST00000557958 FIBPO43427 364 aa19.7■□□□□ 0.74
LDLR-206ENST00000557958 MFSD14BQ5SR56 506 aa19.7■□□□□ 0.74
LDLR-206ENST00000557958 TMTC2Q8N394 836 aa19.7■□□□□ 0.74
LDLR-206ENST00000557958 NOL10Q9BSC4 688 aaKnown RBP19.7■□□□□ 0.74
LDLR-206ENST00000557958 SCAND2PQ9GZW5 306 aaPredicted RBP19.7■□□□□ 0.74
LDLR-206ENST00000557958 GDPD2Q9HCC8 539 aa19.7■□□□□ 0.74
LDLR-206ENST00000557958 GPHNQ9NQX3 736 aaPredicted RBP19.7■□□□□ 0.74
LDLR-206ENST00000557958 ATP8A2Q9NTI2 1148 aa19.7■□□□□ 0.74
LDLR-206ENST00000557958 IFIT3O14879 490 aaKnown RBP19.69■□□□□ 0.74
LDLR-206ENST00000557958 METAP2P50579 478 aaKnown RBP eCLIP19.69■□□□□ 0.74
LDLR-206ENST00000557958 ZNF445P59923 1031 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 GRIK5Q16478 980 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 FERMT3Q86UX7 667 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 RGS22Q8NE09 1264 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 ESR2Q92731 530 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 RTFDC1Q9BY42 306 aaPredicted RBP19.69■□□□□ 0.74
LDLR-206ENST00000557958 KCNQ5Q9NR82 932 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 ZNF277Q9NRM2 450 aaPredicted RBP19.69■□□□□ 0.74
LDLR-206ENST00000557958 LTBP1Q14766 1721 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 CHD4Q14839 1912 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 CCDC69A6NI79 296 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 F8W031 263 aaPredicted RBP19.69■□□□□ 0.74
LDLR-206ENST00000557958 LDHCP07864 332 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 SLC3A2P08195 630 aaKnown RBP19.69■□□□□ 0.74
LDLR-206ENST00000557958 ZSCAN23Q3MJ62 389 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 RRP12Q5JTH9 1297 aaKnown RBP19.69■□□□□ 0.74
LDLR-206ENST00000557958 APOA5Q6Q788 366 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 IGDCC4Q8TDY8 1250 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 ZNF384Q8TF68 577 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 MXD3Q9BW11 206 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 ZSWIM5Q9P217 1185 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 HPS5Q9UPZ3 1129 aa19.69■□□□□ 0.74
LDLR-206ENST00000557958 CCDC88AQ3V6T2 1871 aa19.68■□□□□ 0.74
LDLR-206ENST00000557958 MINDY4BA8MYZ0 360 aa19.68■□□□□ 0.74
LDLR-206ENST00000557958 ZBTB43O43298 467 aa19.68■□□□□ 0.74
LDLR-206ENST00000557958 ECE2O60344 883 aa19.68■□□□□ 0.74
LDLR-206ENST00000557958 DTNBO60941 627 aa19.68■□□□□ 0.74
LDLR-206ENST00000557958 DYNLL1P63167 89 aaKnown RBP19.68■□□□□ 0.74
LDLR-206ENST00000557958 LY9Q9HBG7 655 aa19.68■□□□□ 0.74
LDLR-206ENST00000557958 AATFQ9NY61 560 aaKnown RBP eCLIP19.68■□□□□ 0.74
LDLR-206ENST00000557958 SLC12A7Q9Y666 1083 aa19.68■□□□□ 0.74
LDLR-206ENST00000557958 ELP1O95163 1332 aa19.68■□□□□ 0.74
LDLR-206ENST00000557958 BAG3O95817 575 aa19.67■□□□□ 0.74
LDLR-206ENST00000557958 GRIPAP1Q4V328 841 aa19.67■□□□□ 0.74
LDLR-206ENST00000557958 SOGA3Q5TF21 947 aa19.67■□□□□ 0.74
LDLR-206ENST00000557958 TBC1D22AQ8WUA7 517 aa19.67■□□□□ 0.74
LDLR-206ENST00000557958 UBAC1Q9BSL1 405 aa19.67■□□□□ 0.74
LDLR-206ENST00000557958 ARPP21Q9UBL0 812 aaPredicted RBP19.67■□□□□ 0.74
LDLR-206ENST00000557958 KIF13BQ9NQT8 1826 aa19.67■□□□□ 0.74
LDLR-206ENST00000557958 KIAA1551Q9HCM1 1747 aa19.67■□□□□ 0.74
LDLR-206ENST00000557958 NT5C2P49902 561 aa19.67■□□□□ 0.74
LDLR-206ENST00000557958 RCAN1P53805 252 aa19.67■□□□□ 0.74
LDLR-206ENST00000557958 KIAA2012Q0VF49 1180 aa19.67■□□□□ 0.74
LDLR-206ENST00000557958 PODNQ7Z5L7 613 aa19.67■□□□□ 0.74
LDLR-206ENST00000557958 RESTQ13127 1097 aa19.66■□□□□ 0.74
LDLR-206ENST00000557958 WTAPQ15007 396 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms