RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 ZFPM1Q8IX07 1006 aa11.49□□□□□ -0.57
YBX3-218ENST00000546298 FAM43AQ8N2R8 423 aa11.49□□□□□ -0.57
YBX3-218ENST00000546298 NSUN4Q96CB9 384 aaKnown RBP11.49□□□□□ -0.57
YBX3-218ENST00000546298 CHMP4BQ9H444 224 aaKnown RBP11.49□□□□□ -0.57
YBX3-218ENST00000546298 C1orf115Q9H7X2 142 aa11.49□□□□□ -0.57
YBX3-218ENST00000546298 PICK1Q9NRD5 415 aa11.49□□□□□ -0.57
YBX3-218ENST00000546298 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.49□□□□□ -0.57
YBX3-218ENST00000546298 BTBD19C9JJ37 291 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 CXCL11O14625 94 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 TLR2O60603 784 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 BAG3O95817 575 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 PLCG2P16885 1265 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 MCAMP43121 646 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 MAP3K10Q02779 954 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 PICALMQ13492 652 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 KIF22Q14807 665 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 HSP90AB4PQ58FF6 505 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 PI16Q6UXB8 463 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 ANKRD23Q86SG2 305 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 ERC1Q8IUD2 1116 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.48□□□□□ -0.57
YBX3-218ENST00000546298 CD99L2Q8TCZ2 262 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 ZNF512BQ96KM6 892 aaPredicted RBP11.48□□□□□ -0.57
YBX3-218ENST00000546298 DBNDD2Q9BQY9 259 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 KCNH4Q9UQ05 1017 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 AKAP11Q9UKA4 1901 aa11.48□□□□□ -0.57
YBX3-218ENST00000546298 CTNND1O60716 968 aaKnown RBP11.47□□□□□ -0.57
YBX3-218ENST00000546298 RHBDL3P58872 404 aa11.47□□□□□ -0.57
YBX3-218ENST00000546298 NAA16Q6N069 864 aaPredicted RBP11.47□□□□□ -0.57
YBX3-218ENST00000546298 CEP85Q6P2H3 762 aa11.47□□□□□ -0.57
YBX3-218ENST00000546298 SCYL3Q8IZE3 742 aa11.47□□□□□ -0.57
YBX3-218ENST00000546298 PANK1Q8TE04 598 aa11.47□□□□□ -0.57
YBX3-218ENST00000546298 PTPN22Q9Y2R2 807 aa11.47□□□□□ -0.57
YBX3-218ENST00000546298 DDTLA6NHG4 134 aaPredicted RBP11.46□□□□□ -0.57
YBX3-218ENST00000546298 PHF20L1A8MW92 1017 aa11.46□□□□□ -0.57
YBX3-218ENST00000546298 TBC1D12O60347 775 aa11.46□□□□□ -0.57
YBX3-218ENST00000546298 SH3BP5LQ7L8J4 393 aa11.46□□□□□ -0.57
YBX3-218ENST00000546298 FASTKD5Q7L8L6 764 aaKnown RBP11.46□□□□□ -0.57
YBX3-218ENST00000546298 TEX11Q8IYF3 940 aa11.46□□□□□ -0.57
YBX3-218ENST00000546298 DDX4Q9NQI0 724 aaKnown RBP11.46□□□□□ -0.57
YBX3-218ENST00000546298 SNRKQ9NRH2 765 aa11.46□□□□□ -0.57
YBX3-218ENST00000546298 DDX19BQ9UMR2 479 aa11.46□□□□□ -0.57
YBX3-218ENST00000546298 ZHX2Q9Y6X8 837 aa11.46□□□□□ -0.57
YBX3-218ENST00000546298 ARAP2Q8WZ64 1704 aa11.46□□□□□ -0.58
YBX3-218ENST00000546298 PCNTO95613 3336 aa11.45□□□□□ -0.58
YBX3-218ENST00000546298 ECM29Q5VYK3 1845 aa11.45□□□□□ -0.58
YBX3-218ENST00000546298 PDHXO00330 501 aa11.45□□□□□ -0.58
YBX3-218ENST00000546298 HMMRO75330 724 aa11.45□□□□□ -0.58
YBX3-218ENST00000546298 GNRH1P01148 92 aa11.45□□□□□ -0.58
YBX3-218ENST00000546298 PTPRAP18433 802 aa11.45□□□□□ -0.58
YBX3-218ENST00000546298 PRMT2P55345 433 aa11.45□□□□□ -0.58
YBX3-218ENST00000546298 RPAP2Q8IXW5 612 aaPredicted RBP11.45□□□□□ -0.58
YBX3-218ENST00000546298 ZNF384Q8TF68 577 aa11.45□□□□□ -0.58
YBX3-218ENST00000546298 PARK7Q99497 189 aaKnown RBP11.45□□□□□ -0.58
YBX3-218ENST00000546298 CCDC8Q9H0W5 538 aaPredicted RBP11.45□□□□□ -0.58
YBX3-218ENST00000546298 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.45□□□□□ -0.58
YBX3-218ENST00000546298 RFX7Q2KHR2 1363 aa11.44□□□□□ -0.58
YBX3-218ENST00000546298 ATRNL1Q5VV63 1379 aa11.44□□□□□ -0.58
YBX3-218ENST00000546298 ZAP70P43403 619 aa11.44□□□□□ -0.58
YBX3-218ENST00000546298 PPP4CP60510 307 aa11.44□□□□□ -0.58
YBX3-218ENST00000546298 TMED8Q6PL24 325 aaPredicted RBP11.44□□□□□ -0.58
YBX3-218ENST00000546298 NBPF11Q86T75 865 aa11.44□□□□□ -0.58
YBX3-218ENST00000546298 CERS3Q8IU89 383 aa11.44□□□□□ -0.58
YBX3-218ENST00000546298 EAF2Q96CJ1 260 aaPredicted RBP11.44□□□□□ -0.58
YBX3-218ENST00000546298 OSBPL5Q9H0X9 879 aaPredicted RBP11.44□□□□□ -0.58
YBX3-218ENST00000546298 DHX36Q9H2U1 1008 aaKnown RBP11.44□□□□□ -0.58
YBX3-218ENST00000546298 DBNLQ9UJU6 430 aaKnown RBP11.44□□□□□ -0.58
YBX3-218ENST00000546298 RCAN3Q9UKA8 241 aa11.44□□□□□ -0.58
YBX3-218ENST00000546298 CYP2E1P05181 493 aaPredicted RBP11.43□□□□□ -0.58
YBX3-218ENST00000546298 HOXD10P28358 340 aa11.43□□□□□ -0.58
YBX3-218ENST00000546298 LACTBP83111 547 aaPredicted RBP11.43□□□□□ -0.58
YBX3-218ENST00000546298 C1QBPQ07021 282 aaKnown RBP11.43□□□□□ -0.58
YBX3-218ENST00000546298 C17orf99Q6UX52 265 aa11.43□□□□□ -0.58
YBX3-218ENST00000546298 AACSQ86V21 672 aa11.43□□□□□ -0.58
YBX3-218ENST00000546298 CLASRPQ8N2M8 674 aaKnown RBP11.43□□□□□ -0.58
YBX3-218ENST00000546298 ARMC5Q96C12 935 aa11.43□□□□□ -0.58
YBX3-218ENST00000546298 TBC1D2Q9BYX2 928 aa11.43□□□□□ -0.58
YBX3-218ENST00000546298 AATFQ9NY61 560 aaKnown RBP eCLIP11.43□□□□□ -0.58
YBX3-218ENST00000546298 PI4KBQ9UBF8 816 aa11.43□□□□□ -0.58
YBX3-218ENST00000546298 HERC5Q9UII4 1024 aaKnown RBP11.43□□□□□ -0.58
YBX3-218ENST00000546298 EXOC6BQ9Y2D4 811 aa11.43□□□□□ -0.58
YBX3-218ENST00000546298 SLC45A1Q9Y2W3 748 aa11.43□□□□□ -0.58
YBX3-218ENST00000546298 AFG3L2Q9Y4W6 797 aa11.43□□□□□ -0.58
YBX3-218ENST00000546298 A0A0G2JLL6 359 aaPredicted RBP11.42□□□□□ -0.58
YBX3-218ENST00000546298 IDH1O75874 414 aaKnown RBP11.42□□□□□ -0.58
YBX3-218ENST00000546298 CYP7A1P22680 504 aa11.42□□□□□ -0.58
YBX3-218ENST00000546298 MAP3K12Q12852 859 aa11.42□□□□□ -0.58
YBX3-218ENST00000546298 GADL1Q6ZQY3 521 aa11.42□□□□□ -0.58
YBX3-218ENST00000546298 PRRT2Q7Z6L0 340 aaPredicted RBP11.42□□□□□ -0.58
YBX3-218ENST00000546298 FOXP4Q8IVH2 680 aaPredicted RBP11.42□□□□□ -0.58
YBX3-218ENST00000546298 RHPN1Q8TCX5 695 aa11.42□□□□□ -0.58
YBX3-218ENST00000546298 SH3RF3Q8TEJ3 882 aaPredicted RBP11.42□□□□□ -0.58
YBX3-218ENST00000546298 KIF1BPQ96EK5 621 aa11.42□□□□□ -0.58
YBX3-218ENST00000546298 TMEM106CQ9BVX2 250 aa11.42□□□□□ -0.58
YBX3-218ENST00000546298 TRIM34Q9BYJ4 488 aa11.42□□□□□ -0.58
YBX3-218ENST00000546298 PIH1D3Q9NQM4 214 aaKnown RBP11.42□□□□□ -0.58
YBX3-218ENST00000546298 CPA4Q9UI42 421 aa11.42□□□□□ -0.58
YBX3-218ENST00000546298 COG6Q9Y2V7 657 aa11.42□□□□□ -0.58
YBX3-218ENST00000546298 COL2A1P02458 1487 aaPredicted RBP11.41□□□□□ -0.58
YBX3-218ENST00000546298 RAB11FIP3O75154 756 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms