RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 IL1RAPL2Q9NP60 686 aa25.18■■□□□ 1.62
VPS28-206ENST00000526734 CERS3Q8IU89 383 aa25.17■■□□□ 1.62
VPS28-206ENST00000526734 ZSCAN29Q8IWY8 852 aaPredicted RBP25.17■■□□□ 1.62
VPS28-206ENST00000526734 ATRNL1Q5VV63 1379 aa25.17■■□□□ 1.62
VPS28-206ENST00000526734 IFIT2P09913 472 aaKnown RBP25.16■■□□□ 1.62
VPS28-206ENST00000526734 NOL9Q5SY16 702 aaKnown RBP25.16■■□□□ 1.62
VPS28-206ENST00000526734 MIGA2Q7L4E1 593 aa25.16■■□□□ 1.62
VPS28-206ENST00000526734 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.16■■□□□ 1.62
VPS28-206ENST00000526734 OTUD5Q96G74 571 aa25.16■■□□□ 1.62
VPS28-206ENST00000526734 TBC1D8O95759 1140 aa25.15■■□□□ 1.62
VPS28-206ENST00000526734 PPP4CP60510 307 aa25.15■■□□□ 1.62
VPS28-206ENST00000526734 PPATQ06203 517 aa25.15■■□□□ 1.62
VPS28-206ENST00000526734 PPIL2Q13356 520 aa25.15■■□□□ 1.62
VPS28-206ENST00000526734 PICALMQ13492 652 aa25.15■■□□□ 1.62
VPS28-206ENST00000526734 ZKSCAN4Q969J2 545 aaPredicted RBP25.15■■□□□ 1.62
VPS28-206ENST00000526734 DDX4Q9NQI0 724 aaKnown RBP25.15■■□□□ 1.62
VPS28-206ENST00000526734 IGF2BP3O00425 579 aaKnown RBP eCLIP25.14■■□□□ 1.62
VPS28-206ENST00000526734 MAP3K10Q02779 954 aa25.14■■□□□ 1.62
VPS28-206ENST00000526734 TTF1Q15361 905 aaPredicted RBP25.14■■□□□ 1.62
VPS28-206ENST00000526734 ZFPM1Q8IX07 1006 aa25.14■■□□□ 1.62
VPS28-206ENST00000526734 TEX11Q8IYF3 940 aa25.14■■□□□ 1.62
VPS28-206ENST00000526734 MS4A4AQ96JQ5 239 aa25.14■■□□□ 1.62
VPS28-206ENST00000526734 PIH1D3Q9NQM4 214 aaKnown RBP25.14■■□□□ 1.62
VPS28-206ENST00000526734 GPR25O00155 361 aa25.13■■□□□ 1.61
VPS28-206ENST00000526734 CETPP11597 493 aa25.13■■□□□ 1.61
VPS28-206ENST00000526734 RRP1P56182 461 aaKnown RBP25.13■■□□□ 1.61
VPS28-206ENST00000526734 MAP3K12Q12852 859 aa25.13■■□□□ 1.61
VPS28-206ENST00000526734 DGKZQ13574 1117 aa25.13■■□□□ 1.61
VPS28-206ENST00000526734 ABHD8Q96I13 439 aa25.13■■□□□ 1.61
VPS28-206ENST00000526734 ZCCHC17Q9NP64 241 aaKnown RBP25.13■■□□□ 1.61
VPS28-206ENST00000526734 DOCK2Q92608 1830 aa25.13■■□□□ 1.61
VPS28-206ENST00000526734 CASP8AP2Q9UKL3 1982 aa25.13■■□□□ 1.61
VPS28-206ENST00000526734 CCL15-CCL14A0A0B4J2E2 113 aa25.12■■□□□ 1.61
VPS28-206ENST00000526734 APBB1O00213 710 aa25.12■■□□□ 1.61
VPS28-206ENST00000526734 TBC1D12O60347 775 aa25.12■■□□□ 1.61
VPS28-206ENST00000526734 INPP5BP32019 993 aa25.12■■□□□ 1.61
VPS28-206ENST00000526734 SNAPC2Q13487 334 aa25.12■■□□□ 1.61
VPS28-206ENST00000526734 CCL15Q16663 113 aa25.12■■□□□ 1.61
VPS28-206ENST00000526734 SH3BP5LQ7L8J4 393 aa25.12■■□□□ 1.61
VPS28-206ENST00000526734 CTU1Q7Z7A3 348 aaKnown RBP25.12■■□□□ 1.61
VPS28-206ENST00000526734 CNKSR2Q8WXI2 1034 aa25.12■■□□□ 1.61
VPS28-206ENST00000526734 MCOLN1Q9GZU1 580 aa25.12■■□□□ 1.61
VPS28-206ENST00000526734 OSBPL5Q9H0X9 879 aaPredicted RBP25.12■■□□□ 1.61
VPS28-206ENST00000526734 DDTLA6NHG4 134 aaPredicted RBP25.11■■□□□ 1.61
VPS28-206ENST00000526734 IDH1O75874 414 aaKnown RBP25.11■■□□□ 1.61
VPS28-206ENST00000526734 ZNF296Q8WUU4 475 aaPredicted RBP25.11■■□□□ 1.61
VPS28-206ENST00000526734 BRI3BPQ8WY22 251 aa25.11■■□□□ 1.61
VPS28-206ENST00000526734 LRRCC1Q9C099 1032 aa25.11■■□□□ 1.61
VPS28-206ENST00000526734 FKTNO75072 461 aa25.1■■□□□ 1.61
VPS28-206ENST00000526734 YTHDC1Q96MU7 727 aaKnown RBP25.1■■□□□ 1.61
VPS28-206ENST00000526734 DHX36Q9H2U1 1008 aaKnown RBP25.1■■□□□ 1.61
VPS28-206ENST00000526734 AATFQ9NY61 560 aaKnown RBP eCLIP25.1■■□□□ 1.616e-6■■■■□ 25.6
VPS28-206ENST00000526734 AK9Q5TCS8 1911 aa25.1■■□□□ 1.61
VPS28-206ENST00000526734 PHF20L1A8MW92 1017 aa25.09■■□□□ 1.61
VPS28-206ENST00000526734 IRF6O14896 467 aa25.09■■□□□ 1.61
VPS28-206ENST00000526734 CYP7A1P22680 504 aa25.09■■□□□ 1.61
VPS28-206ENST00000526734 PKN2Q16513 984 aaKnown RBP25.09■■□□□ 1.61
VPS28-206ENST00000526734 SCYL3Q8IZE3 742 aa25.09■■□□□ 1.61
VPS28-206ENST00000526734 SH3RF3Q8TEJ3 882 aaPredicted RBP25.09■■□□□ 1.61
VPS28-206ENST00000526734 PTPN18Q99952 460 aa25.09■■□□□ 1.61
VPS28-206ENST00000526734 CAPN15O75808 1086 aa25.08■■□□□ 1.61
VPS28-206ENST00000526734 PICK1Q9NRD5 415 aa25.08■■□□□ 1.61
VPS28-206ENST00000526734 KCNH4Q9UQ05 1017 aa25.08■■□□□ 1.61
VPS28-206ENST00000526734 CTNND1O60716 968 aaKnown RBP25.07■■□□□ 1.6
VPS28-206ENST00000526734 ADGRA1Q86SQ6 560 aa25.07■■□□□ 1.6
VPS28-206ENST00000526734 HERC5Q9UII4 1024 aaKnown RBP25.07■■□□□ 1.6
VPS28-206ENST00000526734 ATP5JP18859 108 aa25.06■■□□□ 1.6
VPS28-206ENST00000526734 CRHR2Q13324 411 aa25.06■■□□□ 1.6
VPS28-206ENST00000526734 MAGEB6Q8N7X4 407 aa25.06■■□□□ 1.6
VPS28-206ENST00000526734 ANTXR1Q9H6X2 564 aa25.06■■□□□ 1.6
VPS28-206ENST00000526734 DCTPP1Q9H773 170 aa25.06■■□□□ 1.6
VPS28-206ENST00000526734 ZFYVE28Q9HCC9 887 aa25.06■■□□□ 1.6
VPS28-206ENST00000526734 CXCL11O14625 94 aa25.05■■□□□ 1.6
VPS28-206ENST00000526734 TAF1CQ15572 869 aaPredicted RBP25.05■■□□□ 1.6
VPS28-206ENST00000526734 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.05■■□□□ 1.6
VPS28-206ENST00000526734 PI4KBQ9UBF8 816 aa25.05■■□□□ 1.6
VPS28-206ENST00000526734 FLT1P17948 1338 aa25.05■■□□□ 1.6
VPS28-206ENST00000526734 R3HDMLQ9H3Y0 253 aa25.04■■□□□ 1.6
VPS28-206ENST00000526734 NDUFB9Q9Y6M9 179 aa25.04■■□□□ 1.6
VPS28-206ENST00000526734 FAM43AQ8N2R8 423 aa25.03■■□□□ 1.6
VPS28-206ENST00000526734 TGFBRAP1Q8WUH2 860 aa25.03■■□□□ 1.6
VPS28-206ENST00000526734 ERO1AQ96HE7 468 aa25.03■■□□□ 1.6
VPS28-206ENST00000526734 DNAJC2Q99543 621 aaKnown RBP25.03■■□□□ 1.6
VPS28-206ENST00000526734 TBC1D2Q9BYX2 928 aa25.03■■□□□ 1.6
VPS28-206ENST00000526734 GOLIM4O00461 696 aa25.02■■□□□ 1.6
VPS28-206ENST00000526734 PTPRAP18433 802 aa25.02■■□□□ 1.6
VPS28-206ENST00000526734 ANKRD23Q86SG2 305 aa25.02■■□□□ 1.6
VPS28-206ENST00000526734 MAPKAPK5Q8IW41 473 aa25.02■■□□□ 1.6
VPS28-206ENST00000526734 BTBD19C9JJ37 291 aa25.01■■□□□ 1.59
VPS28-206ENST00000526734 HLA-DOAP06340 250 aa25.01■■□□□ 1.59
VPS28-206ENST00000526734 AAMPQ13685 434 aa25.01■■□□□ 1.59
VPS28-206ENST00000526734 SLC9C2Q5TAH2 1124 aa25.01■■□□□ 1.59
VPS28-206ENST00000526734 FOXP4Q8IVH2 680 aaPredicted RBP25.01■■□□□ 1.59
VPS28-206ENST00000526734 GPATCH3Q96I76 525 aa25.01■■□□□ 1.59
VPS28-206ENST00000526734 HAUS7Q99871 368 aa25.01■■□□□ 1.59
VPS28-206ENST00000526734 PAG1Q9NWQ8 432 aa25.01■■□□□ 1.59
VPS28-206ENST00000526734 PDE6AP16499 860 aa25■■□□□ 1.59
VPS28-206ENST00000526734 DYNLL1P63167 89 aaKnown RBP25■■□□□ 1.59
VPS28-206ENST00000526734 ARHGEF6Q15052 776 aa25■■□□□ 1.59
VPS28-206ENST00000526734 METTL16Q86W50 562 aaKnown RBP25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms