RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 LEMD3Q9Y2U8 911 aa3.57□□□□□ -1.84
MCF2-208ENST00000519895 MYPNQ86TC9 1320 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP3.56□□□□□ -1.84
MCF2-208ENST00000519895 PRR5-ARHGAP8B1AHC4 643 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 A1BGP04217 495 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 RPS12P25398 132 aaKnown RBP3.56□□□□□ -1.84
MCF2-208ENST00000519895 ARHGAP8P85298 464 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 GCKRQ14397 625 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 CCDC152Q4G0S7 254 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 TBC1D9BQ66K14 1250 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 FAM178BQ8IXR5 827 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.56□□□□□ -1.84
MCF2-208ENST00000519895 ZFP91Q96JP5 570 aaPredicted RBP3.56□□□□□ -1.84
MCF2-208ENST00000519895 ZNF576Q9H609 170 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 BSDC1Q9NW68 430 aaPredicted RBP3.56□□□□□ -1.84
MCF2-208ENST00000519895 KCNK4Q9NYG8 393 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 ATP6V0A2Q9Y487 856 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 GCN1Q92616 2671 aaKnown RBP3.56□□□□□ -1.84
MCF2-208ENST00000519895 NAV2Q8IVL1 2488 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 UBN2Q6ZU65 1347 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 MYO3BQ8WXR4 1341 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 ANKRD11Q6UB99 2663 aaPredicted RBP3.56□□□□□ -1.84
MCF2-208ENST00000519895 HMGB1P09429 215 aaKnown RBP3.56□□□□□ -1.84
MCF2-208ENST00000519895 ATP2B4P23634 1241 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 EXOSC9Q06265 439 aaKnown RBP3.56□□□□□ -1.84
MCF2-208ENST00000519895 COPS6Q7L5N1 327 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 CERS3Q8IU89 383 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 ZNF513Q8N8E2 541 aaPredicted RBP3.56□□□□□ -1.84
MCF2-208ENST00000519895 HELBQ8NG08 1087 aaPredicted RBP3.56□□□□□ -1.84
MCF2-208ENST00000519895 CLUAP1Q96AJ1 413 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 NLRP3Q96P20 1036 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 LBHD1Q9BQE6 289 aaPredicted RBP3.56□□□□□ -1.84
MCF2-208ENST00000519895 R3HDMLQ9H3Y0 253 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 ZCCHC17Q9NP64 241 aaKnown RBP3.56□□□□□ -1.84
MCF2-208ENST00000519895 CHPF2Q9P2E5 772 aa3.56□□□□□ -1.84
MCF2-208ENST00000519895 CAPN8A6NHC0 703 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 PTCD1O75127 700 aaKnown RBP3.55□□□□□ -1.84
MCF2-208ENST00000519895 PRKG1Q13976 671 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 DCTN1Q14203 1278 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 CCDC146Q8IYE0 955 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 MTMR14Q8NCE2 650 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 EYA3Q99504 573 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 GOPCQ9HD26 462 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 NOP58Q9Y2X3 529 aaKnown RBP3.55□□□□□ -1.84
MCF2-208ENST00000519895 MROH5Q6ZUA9 1318 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 A0A1B0GTL3 188 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 ZBTB48P10074 688 aaPredicted RBP3.55□□□□□ -1.84
MCF2-208ENST00000519895 HOXD10P28358 340 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 KCNQ1P51787 676 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 HDLBPQ00341 1268 aaKnown RBP3.55□□□□□ -1.84
MCF2-208ENST00000519895 C19orf57Q0VDD7 668 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 HERC4Q5GLZ8 1057 aaPredicted RBP3.55□□□□□ -1.84
MCF2-208ENST00000519895 ZKSCAN2Q63HK3 967 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 NBPF5PQ86XG9 351 aaPredicted RBP3.55□□□□□ -1.84
MCF2-208ENST00000519895 SUGP1Q8IWZ8 645 aaKnown RBP3.55□□□□□ -1.84
MCF2-208ENST00000519895 JDP2Q8WYK2 163 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 FAM117AQ9C073 453 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 SRCIN1Q9C0H9 1055 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 ANGPTL2Q9UKU9 493 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 NIP7Q9Y221 180 aaKnown RBP eCLIP3.55□□□□□ -1.84
MCF2-208ENST00000519895 COL4A1P02462 1669 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 RFX7Q2KHR2 1363 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 RPAP1Q9BWH6 1393 aaPredicted RBP3.55□□□□□ -1.84
MCF2-208ENST00000519895 IGKV5-2P06315 115 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 CTSWP56202 376 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 HSP90AB4PQ58FF6 505 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 SUSD4Q5VX71 490 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 ATF7IPQ6VMQ6 1270 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 SMIM5Q71RC9 77 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 RPAP2Q8IXW5 612 aaPredicted RBP3.55□□□□□ -1.84
MCF2-208ENST00000519895 LSM14AQ8ND56 463 aaKnown RBP3.55□□□□□ -1.84
MCF2-208ENST00000519895 KRTAP3-3Q9BYR6 98 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 KRTAP3-2Q9BYR7 98 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 COPRSQ9NQ92 184 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 SPTBN4Q9H254 2564 aa3.55□□□□□ -1.84
MCF2-208ENST00000519895 DOCK2Q92608 1830 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 TAF1P21675 1872 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.54□□□□□ -1.84
MCF2-208ENST00000519895 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.54□□□□□ -1.84
MCF2-208ENST00000519895 FAM205CA6NFA0 338 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 GRM8O00222 908 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 TRAK2O60296 914 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 CANXP27824 592 aaKnown RBP3.54□□□□□ -1.84
MCF2-208ENST00000519895 RBM25P49756 843 aaKnown RBP3.54□□□□□ -1.84
MCF2-208ENST00000519895 UBE4AQ14139 1066 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 TTLL7Q6ZT98 887 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 RIC3Q7Z5B4 369 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 FBXL6Q8N531 539 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 DPF2Q92785 391 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 NBPF3Q9H094 633 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 ZNF408Q9H9D4 720 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 PAK6Q9NQU5 681 aaPredicted RBP3.54□□□□□ -1.84
MCF2-208ENST00000519895 FOXO4P98177 505 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 SERINC3Q13530 473 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 KIF22Q14807 665 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 HLFQ16534 295 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 USP48Q86UV5 1035 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 SSH1Q8WYL5 1049 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 DDX19BQ9UMR2 479 aa3.54□□□□□ -1.84
MCF2-208ENST00000519895 MAP3K2Q9Y2U5 619 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms