RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 STRBPQ96SI9 672 aaKnown RBP17.95■□□□□ 0.46
NUP54-213ENST00000513352 IDI2Q9BXS1 227 aa17.95■□□□□ 0.46
NUP54-213ENST00000513352 TMEM39BQ9GZU3 492 aa17.95■□□□□ 0.46
NUP54-213ENST00000513352 DEFB129Q9H1M3 183 aa17.95■□□□□ 0.46
NUP54-213ENST00000513352 FAM198AQ9UFP1 575 aa17.95■□□□□ 0.46
NUP54-213ENST00000513352 SAP30BPQ9UHR5 308 aaKnown RBP17.95■□□□□ 0.46
NUP54-213ENST00000513352 MYH1P12882 1939 aa17.95■□□□□ 0.46
NUP54-213ENST00000513352 BAZ2AQ9UIF9 1905 aaKnown RBP17.94■□□□□ 0.46
NUP54-213ENST00000513352 GNAT2P19087 354 aa17.94■□□□□ 0.46
NUP54-213ENST00000513352 SLC4A8Q2Y0W8 1093 aa17.94■□□□□ 0.46
NUP54-213ENST00000513352 FKBP1CQ5VVH2 108 aa17.94■□□□□ 0.46
NUP54-213ENST00000513352 PRAMEF18Q5VWM3 479 aa17.94■□□□□ 0.46
NUP54-213ENST00000513352 ZNF589Q86UQ0 364 aaPredicted RBP17.94■□□□□ 0.46
NUP54-213ENST00000513352 ZNF408Q9H9D4 720 aa17.94■□□□□ 0.46
NUP54-213ENST00000513352 FLT1P17948 1338 aa17.94■□□□□ 0.46
NUP54-213ENST00000513352 CCDC171Q6TFL3 1326 aa17.94■□□□□ 0.46
NUP54-213ENST00000513352 CNTNAP1P78357 1384 aa17.93■□□□□ 0.46
NUP54-213ENST00000513352 TRAF5O00463 557 aa17.93■□□□□ 0.46
NUP54-213ENST00000513352 ENTPD3O75355 529 aa17.93■□□□□ 0.46
NUP54-213ENST00000513352 DLK2Q6UY11 383 aa17.93■□□□□ 0.46
NUP54-213ENST00000513352 FAM83AQ86UY5 434 aa17.93■□□□□ 0.46
NUP54-213ENST00000513352 FAM151AQ8WW52 585 aa17.93■□□□□ 0.46
NUP54-213ENST00000513352 OSBPL5Q9H0X9 879 aaPredicted RBP17.93■□□□□ 0.46
NUP54-213ENST00000513352 PPP2R3BQ9Y5P8 575 aa17.93■□□□□ 0.46
NUP54-213ENST00000513352 RAD50Q92878 1312 aa17.93■□□□□ 0.46
NUP54-213ENST00000513352 TDO2P48775 406 aa17.92■□□□□ 0.46
NUP54-213ENST00000513352 ZFPM1Q8IX07 1006 aa17.92■□□□□ 0.46
NUP54-213ENST00000513352 CDCA5Q96FF9 252 aa17.92■□□□□ 0.46
NUP54-213ENST00000513352 POLR3DP05423 398 aaPredicted RBP17.91■□□□□ 0.46
NUP54-213ENST00000513352 NF2P35240 595 aa17.91■□□□□ 0.46
NUP54-213ENST00000513352 FMR1Q06787 632 aaKnown RBP eCLIP17.91■□□□□ 0.46
NUP54-213ENST00000513352 AMOTL1Q8IY63 956 aa17.91■□□□□ 0.46
NUP54-213ENST00000513352 NACAP1Q9BZK3 213 aa17.91■□□□□ 0.46
NUP54-213ENST00000513352 DCP1AQ9NPI6 582 aaPredicted RBP17.91■□□□□ 0.46
NUP54-213ENST00000513352 ATP8A2Q9NTI2 1148 aa17.91■□□□□ 0.46
NUP54-213ENST00000513352 MCM9Q9NXL9 1143 aa17.91■□□□□ 0.46
NUP54-213ENST00000513352 VPS53Q5VIR6 699 aa17.9■□□□□ 0.46
NUP54-213ENST00000513352 CDAN1Q8IWY9 1227 aa17.9■□□□□ 0.46
NUP54-213ENST00000513352 CSRNP1Q96S65 589 aa17.9■□□□□ 0.46
NUP54-213ENST00000513352 ESYT1Q9BSJ8 1104 aa17.9■□□□□ 0.46
NUP54-213ENST00000513352 IL25Q9H293 177 aa17.9■□□□□ 0.46
NUP54-213ENST00000513352 PALD1Q9ULE6 856 aa17.9■□□□□ 0.46
NUP54-213ENST00000513352 TRPM7Q96QT4 1865 aa17.9■□□□□ 0.46
NUP54-213ENST00000513352 RPAP1Q9BWH6 1393 aaPredicted RBP17.9■□□□□ 0.46
NUP54-213ENST00000513352 DDTLA6NHG4 134 aaPredicted RBP17.89■□□□□ 0.45
NUP54-213ENST00000513352 GSG1L2A8MUP6 293 aa17.89■□□□□ 0.45
NUP54-213ENST00000513352 PATL2C9JE40 543 aaKnown RBP17.89■□□□□ 0.45
NUP54-213ENST00000513352 SGSM2O43147 1006 aa17.89■□□□□ 0.45
NUP54-213ENST00000513352 NPM3O75607 178 aaKnown RBP17.89■□□□□ 0.45
NUP54-213ENST00000513352 HLA-DOAP06340 250 aa17.89■□□□□ 0.45
NUP54-213ENST00000513352 FSTL1Q12841 308 aa17.89■□□□□ 0.45
NUP54-213ENST00000513352 PRKG1Q13976 671 aa17.89■□□□□ 0.45
NUP54-213ENST00000513352 TTLL12Q14166 644 aaPredicted RBP17.89■□□□□ 0.45
NUP54-213ENST00000513352 SUPT20HL1Q3ZLR7 823 aa17.89■□□□□ 0.45
NUP54-213ENST00000513352 NBPF12Q5TAG4 269 aaPredicted RBP17.89■□□□□ 0.45
NUP54-213ENST00000513352 KIAA1211Q6ZU35 1233 aa17.89■□□□□ 0.45
NUP54-213ENST00000513352 TRIM34Q9BYJ4 488 aa17.89■□□□□ 0.45
NUP54-213ENST00000513352 NAPBQ9H115 298 aa17.89■□□□□ 0.45
NUP54-213ENST00000513352 DDX60LQ5H9U9 1706 aaKnown RBP17.89■□□□□ 0.45
NUP54-213ENST00000513352 HSPD1P10809 573 aaKnown RBP17.88■□□□□ 0.45
NUP54-213ENST00000513352 SH3BP5LQ7L8J4 393 aa17.88■□□□□ 0.45
NUP54-213ENST00000513352 HOOK2Q96ED9 719 aa17.88■□□□□ 0.45
NUP54-213ENST00000513352 DHX36Q9H2U1 1008 aaKnown RBP17.88■□□□□ 0.45
NUP54-213ENST00000513352 EPB41L4AQ9HCS5 686 aaPredicted RBP17.88■□□□□ 0.45
NUP54-213ENST00000513352 COL2A1P02458 1487 aaPredicted RBP17.88■□□□□ 0.45
NUP54-213ENST00000513352 LAMB1P07942 1786 aa17.87■□□□□ 0.45
NUP54-213ENST00000513352 CELF2O95319 508 aaKnown RBP17.87■□□□□ 0.45
NUP54-213ENST00000513352 ITGBL1O95965 494 aaPredicted RBP17.87■□□□□ 0.45
NUP54-213ENST00000513352 CYP2D6P10635 497 aa17.87■□□□□ 0.45
NUP54-213ENST00000513352 TTC6Q86TZ1 520 aa17.87■□□□□ 0.45
NUP54-213ENST00000513352 IFNL3Q8IZI9 196 aa17.87■□□□□ 0.45
NUP54-213ENST00000513352 CRACR2BQ8N4Y2 399 aaPredicted RBP17.87■□□□□ 0.45
NUP54-213ENST00000513352 TEPSINQ96N21 525 aa17.87■□□□□ 0.45
NUP54-213ENST00000513352 ANO2Q9NQ90 1003 aa17.87■□□□□ 0.45
NUP54-213ENST00000513352 CYP2D7A0A087X1C5 515 aa17.86■□□□□ 0.45
NUP54-213ENST00000513352 MINDY4BA8MYZ0 360 aa17.86■□□□□ 0.45
NUP54-213ENST00000513352 USP17L12C9JPN9 530 aa17.86■□□□□ 0.45
NUP54-213ENST00000513352 USP17L21D6R901 530 aa17.86■□□□□ 0.45
NUP54-213ENST00000513352 GIMAP6Q6P9H5 292 aa17.86■□□□□ 0.45
NUP54-213ENST00000513352 MIGA2Q7L4E1 593 aa17.86■□□□□ 0.45
NUP54-213ENST00000513352 ARPP21Q9UBL0 812 aaPredicted RBP17.86■□□□□ 0.45
NUP54-213ENST00000513352 MKRN1Q9UHC7 482 aaKnown RBP17.86■□□□□ 0.45
NUP54-213ENST00000513352 ATRNL1Q5VV63 1379 aa17.86■□□□□ 0.45
NUP54-213ENST00000513352 FAM196BA6NMK8 535 aa17.85■□□□□ 0.45
NUP54-213ENST00000513352 FOXP2O15409 715 aa17.85■□□□□ 0.45
NUP54-213ENST00000513352 DCAF15Q66K64 600 aa17.85■□□□□ 0.45
NUP54-213ENST00000513352 CTR9Q6PD62 1173 aa17.85■□□□□ 0.45
NUP54-213ENST00000513352 STK11IPQ8N1F8 1099 aa17.85■□□□□ 0.45
NUP54-213ENST00000513352 DSCC1Q9BVC3 393 aa17.85■□□□□ 0.45
NUP54-213ENST00000513352 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.85■□□□□ 0.45
NUP54-213ENST00000513352 PI4KBQ9UBF8 816 aa17.85■□□□□ 0.45
NUP54-213ENST00000513352 SSC5DA1L4H1 1573 aa17.84■□□□□ 0.45
NUP54-213ENST00000513352 PPP1R12BO60237 982 aaPredicted RBP17.84■□□□□ 0.45
NUP54-213ENST00000513352 PLCD1P51178 756 aa17.84■□□□□ 0.45
NUP54-213ENST00000513352 PTH1RQ03431 593 aa17.84■□□□□ 0.45
NUP54-213ENST00000513352 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.84■□□□□ 0.45
NUP54-213ENST00000513352 FZD1Q9UP38 647 aa17.84■□□□□ 0.45
NUP54-213ENST00000513352 MYH8P13535 1937 aa17.84■□□□□ 0.45
NUP54-213ENST00000513352 SIPA1L1O43166 1804 aa17.84■□□□□ 0.45
NUP54-213ENST00000513352 PASKQ96RG2 1323 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms