RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ZNF124Q15973 351 aa5.98□□□□□ -1.45
NUP54-208ENST00000508604 WFDC3Q8IUB2 231 aa5.98□□□□□ -1.45
NUP54-208ENST00000508604 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.98□□□□□ -1.45
NUP54-208ENST00000508604 NIF3L1Q9GZT8 377 aa5.98□□□□□ -1.45
NUP54-208ENST00000508604 MBNL3Q9NUK0 354 aaKnown RBP5.98□□□□□ -1.45
NUP54-208ENST00000508604 NLRP2Q9NX02 1062 aa5.98□□□□□ -1.45
NUP54-208ENST00000508604 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.98□□□□□ -1.45
NUP54-208ENST00000508604 ZNF862O60290 1169 aa5.97□□□□□ -1.45
NUP54-208ENST00000508604 KRTAP5-3Q6L8H2 238 aa5.97□□□□□ -1.45
NUP54-208ENST00000508604 DUSP23Q9BVJ7 150 aa5.97□□□□□ -1.45
NUP54-208ENST00000508604 FAM53CQ9NYF3 392 aa5.97□□□□□ -1.45
NUP54-208ENST00000508604 XRCC5P13010 732 aaKnown RBP5.96□□□□□ -1.46
NUP54-208ENST00000508604 ITIH2P19823 946 aa5.96□□□□□ -1.46
NUP54-208ENST00000508604 SERPINB4P48594 390 aa5.96□□□□□ -1.46
NUP54-208ENST00000508604 FCGRTP55899 365 aa5.96□□□□□ -1.46
NUP54-208ENST00000508604 FAAP100Q0VG06 881 aa5.96□□□□□ -1.46
NUP54-208ENST00000508604 SLC23A3Q6PIS1 610 aa5.96□□□□□ -1.46
NUP54-208ENST00000508604 LRRN4CLQ8ND94 238 aa5.96□□□□□ -1.46
NUP54-208ENST00000508604 DMRTB1Q96MA1 342 aa5.96□□□□□ -1.46
NUP54-208ENST00000508604 EMILIN2Q9BXX0 1053 aa5.96□□□□□ -1.46
NUP54-208ENST00000508604 GTF2IRD1Q9UHL9 959 aa5.96□□□□□ -1.46
NUP54-208ENST00000508604 SNX11Q9Y5W9 270 aa5.96□□□□□ -1.46
NUP54-208ENST00000508604 LEFTY1O75610 366 aa5.95□□□□□ -1.46
NUP54-208ENST00000508604 OXCT1P55809 520 aa5.95□□□□□ -1.46
NUP54-208ENST00000508604 ARHGAP4P98171 946 aa5.95□□□□□ -1.46
NUP54-208ENST00000508604 GRM2Q14416 872 aa5.95□□□□□ -1.46
NUP54-208ENST00000508604 TOP6BLQ8N6T0 577 aa5.95□□□□□ -1.46
NUP54-208ENST00000508604 ASB11Q8WXH4 323 aa5.95□□□□□ -1.46
NUP54-208ENST00000508604 FAM84AQ96KN4 292 aa5.95□□□□□ -1.46
NUP54-208ENST00000508604 CD96P40200 585 aa5.94□□□□□ -1.46
NUP54-208ENST00000508604 SULF2Q8IWU5 870 aa5.94□□□□□ -1.46
NUP54-208ENST00000508604 RNF214Q8ND24 703 aa5.94□□□□□ -1.46
NUP54-208ENST00000508604 ACSBG1Q96GR2 724 aa5.94□□□□□ -1.46
NUP54-208ENST00000508604 CSRNP1Q96S65 589 aa5.94□□□□□ -1.46
NUP54-208ENST00000508604 PICK1Q9NRD5 415 aa5.94□□□□□ -1.46
NUP54-208ENST00000508604 ADAMTS6Q9UKP5 1117 aa5.94□□□□□ -1.46
NUP54-208ENST00000508604 PCDHGC5Q9Y5F6 944 aa5.94□□□□□ -1.46
NUP54-208ENST00000508604 LRRC10BA6NIK2 292 aa5.94□□□□□ -1.46
NUP54-208ENST00000508604 ISL2Q96A47 359 aa5.94□□□□□ -1.46
NUP54-208ENST00000508604 ARNTP27540 789 aa5.93□□□□□ -1.46
NUP54-208ENST00000508604 ERVK-24P63145 666 aa5.93□□□□□ -1.46
NUP54-208ENST00000508604 IKZF1Q13422 519 aa5.93□□□□□ -1.46
NUP54-208ENST00000508604 KCNMB1Q16558 191 aa5.93□□□□□ -1.46
NUP54-208ENST00000508604 FBLN7Q53RD9 439 aa5.93□□□□□ -1.46
NUP54-208ENST00000508604 ZSWIM9Q86XI8 627 aa5.93□□□□□ -1.46
NUP54-208ENST00000508604 GPR182O15218 404 aa5.92□□□□□ -1.46
NUP54-208ENST00000508604 ECM1Q16610 540 aa5.92□□□□□ -1.46
NUP54-208ENST00000508604 MAP1SQ66K74 1059 aaPredicted RBP5.92□□□□□ -1.46
NUP54-208ENST00000508604 FLAD1Q8NFF5 587 aa5.92□□□□□ -1.46
NUP54-208ENST00000508604 BHLHE22Q8NFJ8 381 aaPredicted RBP5.92□□□□□ -1.46
NUP54-208ENST00000508604 EPS8L3Q8TE67 593 aaKnown RBP5.92□□□□□ -1.46
NUP54-208ENST00000508604 CBX8Q9HC52 389 aa5.92□□□□□ -1.46
NUP54-208ENST00000508604 PLAGL2Q9UPG8 496 aa5.92□□□□□ -1.46
NUP54-208ENST00000508604 AKAP2Q9Y2D5 859 aa5.92□□□□□ -1.46
NUP54-208ENST00000508604 SAMM50Q9Y512 469 aa5.92□□□□□ -1.46
NUP54-208ENST00000508604 GNAT3A8MTJ3 354 aa5.91□□□□□ -1.46
NUP54-208ENST00000508604 NEFMP07197 916 aa5.91□□□□□ -1.46
NUP54-208ENST00000508604 NME2P22392 152 aa5.91□□□□□ -1.46
NUP54-208ENST00000508604 ZP2Q05996 745 aa5.91□□□□□ -1.46
NUP54-208ENST00000508604 ZC3H12AQ5D1E8 599 aaKnown RBP5.91□□□□□ -1.46
NUP54-208ENST00000508604 PDZD3Q86UT5 571 aa5.91□□□□□ -1.46
NUP54-208ENST00000508604 ALKBH8Q96BT7 664 aaKnown RBP5.91□□□□□ -1.46
NUP54-208ENST00000508604 TNKS2Q9H2K2 1166 aa5.91□□□□□ -1.46
NUP54-208ENST00000508604 IGF2BP3O00425 579 aaKnown RBP eCLIP5.91□□□□□ -1.46
NUP54-208ENST00000508604 KRTAP19-4Q3LI73 84 aa5.91□□□□□ -1.46
NUP54-208ENST00000508604 CDC37L1Q7L3B6 337 aa5.91□□□□□ -1.46
NUP54-208ENST00000508604 BCO2Q9BYV7 579 aa5.91□□□□□ -1.46
NUP54-208ENST00000508604 U3KQE9 123 aa5.91□□□□□ -1.46
NUP54-208ENST00000508604 AFMP43652 599 aa5.9□□□□□ -1.47
NUP54-208ENST00000508604 MLANAQ16655 118 aa5.9□□□□□ -1.47
NUP54-208ENST00000508604 TOX2Q96NM4 488 aa5.9□□□□□ -1.47
NUP54-208ENST00000508604 PPP1R16BQ96T49 567 aa5.9□□□□□ -1.47
NUP54-208ENST00000508604 RBCK1Q9BYM8 510 aa5.9□□□□□ -1.47
NUP54-208ENST00000508604 PRDM10Q9NQV6 1147 aa5.9□□□□□ -1.47
NUP54-208ENST00000508604 RAP1GAPP47736 663 aa5.89□□□□□ -1.47
NUP54-208ENST00000508604 PDE4CQ08493 712 aa5.89□□□□□ -1.47
NUP54-208ENST00000508604 KCT2Q8NC54 265 aa5.89□□□□□ -1.47
NUP54-208ENST00000508604 CCER1Q8TC90 406 aaPredicted RBP5.89□□□□□ -1.47
NUP54-208ENST00000508604 GPBAR1Q8TDU6 330 aa5.89□□□□□ -1.47
NUP54-208ENST00000508604 PRDM7Q9NQW5 492 aa5.89□□□□□ -1.47
NUP54-208ENST00000508604 CLCN7P51798 805 aa5.88□□□□□ -1.47
NUP54-208ENST00000508604 ZSCAN18Q8TBC5 510 aaPredicted RBP5.88□□□□□ -1.47
NUP54-208ENST00000508604 HEXIM2Q96MH2 286 aaKnown RBP5.88□□□□□ -1.47
NUP54-208ENST00000508604 PPM1JQ5JR12 505 aa5.88□□□□□ -1.47
NUP54-208ENST00000508604 MPZL3Q6UWV2 235 aa5.88□□□□□ -1.47
NUP54-208ENST00000508604 SPOCD1Q6ZMY3 1216 aa5.88□□□□□ -1.47
NUP54-208ENST00000508604 CEP44Q9C0F1 390 aa5.88□□□□□ -1.47
NUP54-208ENST00000508604 PRDM5Q9NQX1 630 aaPredicted RBP5.88□□□□□ -1.47
NUP54-208ENST00000508604 FANCGO15287 622 aa5.87□□□□□ -1.47
NUP54-208ENST00000508604 IGHA2P01877 340 aa5.87□□□□□ -1.47
NUP54-208ENST00000508604 MESP2Q0VG99 397 aa5.87□□□□□ -1.47
NUP54-208ENST00000508604 SPACA3Q8IXA5 215 aa5.87□□□□□ -1.47
NUP54-208ENST00000508604 STK35Q8TDR2 534 aa5.87□□□□□ -1.47
NUP54-208ENST00000508604 FOXQ1Q9C009 403 aa5.87□□□□□ -1.47
NUP54-208ENST00000508604 LMCD1Q9NZU5 365 aa5.87□□□□□ -1.47
NUP54-208ENST00000508604 GTF3C3Q9Y5Q9 886 aa5.87□□□□□ -1.47
NUP54-208ENST00000508604 CSADQ9Y600 493 aa5.87□□□□□ -1.47
NUP54-208ENST00000508604 ZNF252P-AS1Q0IIN9 211 aa5.86□□□□□ -1.47
NUP54-208ENST00000508604 LRRC14Q15048 493 aa5.86□□□□□ -1.47
NUP54-208ENST00000508604 PI16Q6UXB8 463 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms