RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 ENTPD3O75355 529 aa22.06■■□□□ 1.12
SQSTM1-209ENST00000504627 LDHCP07864 332 aa22.06■■□□□ 1.12
SQSTM1-209ENST00000504627 GSTO1P78417 241 aa22.06■■□□□ 1.12
SQSTM1-209ENST00000504627 SNAPC2Q13487 334 aa22.06■■□□□ 1.12
SQSTM1-209ENST00000504627 PICALMQ13492 652 aa22.06■■□□□ 1.12
SQSTM1-209ENST00000504627 TBC1D9Q6ZT07 1266 aa22.06■■□□□ 1.12
SQSTM1-209ENST00000504627 ZFPM1Q8IX07 1006 aa22.06■■□□□ 1.12
SQSTM1-209ENST00000504627 ERO1AQ96HE7 468 aa22.06■■□□□ 1.12
SQSTM1-209ENST00000504627 ZFYVE28Q9HCC9 887 aa22.06■■□□□ 1.12
SQSTM1-209ENST00000504627 TRIM17Q9Y577 477 aa22.06■■□□□ 1.12
SQSTM1-209ENST00000504627 LAMB1P07942 1786 aa22.05■■□□□ 1.12
SQSTM1-209ENST00000504627 MCAMP43121 646 aa22.05■■□□□ 1.12
SQSTM1-209ENST00000504627 SOX10P56693 466 aa22.05■■□□□ 1.12
SQSTM1-209ENST00000504627 PPATQ06203 517 aa22.05■■□□□ 1.12
SQSTM1-209ENST00000504627 PPIL2Q13356 520 aa22.05■■□□□ 1.12
SQSTM1-209ENST00000504627 LRP2BPQ9P2M1 347 aa22.05■■□□□ 1.12
SQSTM1-209ENST00000504627 GPR75-ASB3A0A0A6YYF3 556 aa22.04■■□□□ 1.12
SQSTM1-209ENST00000504627 SP3Q02447 781 aa22.04■■□□□ 1.12
SQSTM1-209ENST00000504627 FAM43AQ8N2R8 423 aa22.04■■□□□ 1.12
SQSTM1-209ENST00000504627 NSUN4Q96CB9 384 aaKnown RBP22.04■■□□□ 1.12
SQSTM1-209ENST00000504627 ZBTB40Q9NUA8 1239 aa22.04■■□□□ 1.12
SQSTM1-209ENST00000504627 ZNF112Q9UJU3 913 aa22.04■■□□□ 1.12
SQSTM1-209ENST00000504627 CD99L2Q8TCZ2 262 aa22.03■■□□□ 1.12
SQSTM1-209ENST00000504627 CCDC136Q96JN2 1154 aa22.03■■□□□ 1.12
SQSTM1-209ENST00000504627 DBNDD2Q9BQY9 259 aa22.03■■□□□ 1.12
SQSTM1-209ENST00000504627 SNRKQ9NRH2 765 aa22.03■■□□□ 1.12
SQSTM1-209ENST00000504627 NOP58Q9Y2X3 529 aaKnown RBP22.03■■□□□ 1.12
SQSTM1-209ENST00000504627 CEP85Q6P2H3 762 aa22.02■■□□□ 1.12
SQSTM1-209ENST00000504627 OTOP1Q7RTM1 612 aa22.02■■□□□ 1.12
SQSTM1-209ENST00000504627 NOL10Q9BSC4 688 aaKnown RBP22.02■■□□□ 1.12
SQSTM1-209ENST00000504627 DDX4Q9NQI0 724 aaKnown RBP22.02■■□□□ 1.12
SQSTM1-209ENST00000504627 BTBD19C9JJ37 291 aa22.01■■□□□ 1.11
SQSTM1-209ENST00000504627 NOL9Q5SY16 702 aaKnown RBP22.01■■□□□ 1.11
SQSTM1-209ENST00000504627 ZNF384Q8TF68 577 aa22.01■■□□□ 1.11
SQSTM1-209ENST00000504627 EFCC1Q9HA90 598 aa22.01■■□□□ 1.11
SQSTM1-209ENST00000504627 DDTLA6NHG4 134 aaPredicted RBP22■■□□□ 1.11
SQSTM1-209ENST00000504627 RHBDL3P58872 404 aa22■■□□□ 1.11
SQSTM1-209ENST00000504627 ARHGEF6Q15052 776 aa22■■□□□ 1.11
SQSTM1-209ENST00000504627 SH3BP5LQ7L8J4 393 aa22■■□□□ 1.11
SQSTM1-209ENST00000504627 ZCCHC17Q9NP64 241 aaKnown RBP22■■□□□ 1.11
SQSTM1-209ENST00000504627 RFX7Q2KHR2 1363 aa21.99■■□□□ 1.11
SQSTM1-209ENST00000504627 MAP4K4O95819 1239 aaPredicted RBP21.99■■□□□ 1.11
SQSTM1-209ENST00000504627 CCDC8Q9H0W5 538 aaPredicted RBP21.99■■□□□ 1.11
SQSTM1-209ENST00000504627 PICK1Q9NRD5 415 aa21.99■■□□□ 1.11
SQSTM1-209ENST00000504627 B4GALNT3Q6L9W6 998 aa21.98■■□□□ 1.11
SQSTM1-209ENST00000504627 NAA16Q6N069 864 aaPredicted RBP21.98■■□□□ 1.11
SQSTM1-209ENST00000504627 ERC1Q8IUD2 1116 aa21.98■■□□□ 1.11
SQSTM1-209ENST00000504627 SCYL3Q8IZE3 742 aa21.98■■□□□ 1.11
SQSTM1-209ENST00000504627 KCNH4Q9UQ05 1017 aa21.98■■□□□ 1.11
SQSTM1-209ENST00000504627 EXOC6BQ9Y2D4 811 aa21.98■■□□□ 1.11
SQSTM1-209ENST00000504627 PHF20L1A8MW92 1017 aa21.97■■□□□ 1.11
SQSTM1-209ENST00000504627 TLR2O60603 784 aa21.97■■□□□ 1.11
SQSTM1-209ENST00000504627 BAG3O95817 575 aa21.97■■□□□ 1.11
SQSTM1-209ENST00000504627 TEX11Q8IYF3 940 aa21.97■■□□□ 1.11
SQSTM1-209ENST00000504627 EAF2Q96CJ1 260 aaPredicted RBP21.97■■□□□ 1.11
SQSTM1-209ENST00000504627 ZNF512BQ96KM6 892 aaPredicted RBP21.97■■□□□ 1.11
SQSTM1-209ENST00000504627 DBNLQ9UJU6 430 aaKnown RBP21.97■■□□□ 1.11
SQSTM1-209ENST00000504627 PTPN22Q9Y2R2 807 aa21.97■■□□□ 1.11
SQSTM1-209ENST00000504627 ATRNL1Q5VV63 1379 aa21.97■■□□□ 1.11
SQSTM1-209ENST00000504627 NPM3O75607 178 aaKnown RBP21.96■■□□□ 1.11
SQSTM1-209ENST00000504627 CYP2E1P05181 493 aaPredicted RBP21.96■■□□□ 1.11
SQSTM1-209ENST00000504627 ZAP70P43403 619 aa21.96■■□□□ 1.11
SQSTM1-209ENST00000504627 KIF22Q14807 665 aa21.96■■□□□ 1.11
SQSTM1-209ENST00000504627 HSP90AB4PQ58FF6 505 aa21.96■■□□□ 1.11
SQSTM1-209ENST00000504627 ANKRD23Q86SG2 305 aa21.96■■□□□ 1.11
SQSTM1-209ENST00000504627 TLR7Q9NYK1 1049 aaKnown RBP21.96■■□□□ 1.11
SQSTM1-209ENST00000504627 ZHX2Q9Y6X8 837 aa21.96■■□□□ 1.11
SQSTM1-209ENST00000504627 DOCK2Q92608 1830 aa21.95■■□□□ 1.1
SQSTM1-209ENST00000504627 PDHXO00330 501 aa21.95■■□□□ 1.1
SQSTM1-209ENST00000504627 CXCL11O14625 94 aa21.95■■□□□ 1.1
SQSTM1-209ENST00000504627 MAP3K10Q02779 954 aa21.95■■□□□ 1.1
SQSTM1-209ENST00000504627 OSBPL5Q9H0X9 879 aaPredicted RBP21.95■■□□□ 1.1
SQSTM1-209ENST00000504627 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.95■■□□□ 1.16e-7■□□□□ 10.6
SQSTM1-209ENST00000504627 AATFQ9NY61 560 aaKnown RBP eCLIP21.95■■□□□ 1.11e-6■□□□□ 10.1
SQSTM1-209ENST00000504627 CTNND1O60716 968 aaKnown RBP21.94■■□□□ 1.1
SQSTM1-209ENST00000504627 SLURP2P0DP57 97 aa21.94■■□□□ 1.1
SQSTM1-209ENST00000504627 PLCG2P16885 1265 aa21.94■■□□□ 1.1
SQSTM1-209ENST00000504627 PTPRAP18433 802 aa21.94■■□□□ 1.1
SQSTM1-209ENST00000504627 SH3RF3Q8TEJ3 882 aaPredicted RBP21.94■■□□□ 1.1
SQSTM1-209ENST00000504627 PCDHB15Q9Y5E8 787 aa21.94■■□□□ 1.1
SQSTM1-209ENST00000504627 AACSQ86V21 672 aa21.93■■□□□ 1.1
SQSTM1-209ENST00000504627 FAM196BA6NMK8 535 aa21.92■■□□□ 1.1
SQSTM1-209ENST00000504627 TBC1D12O60347 775 aa21.92■■□□□ 1.1
SQSTM1-209ENST00000504627 IGSF3O75054 1194 aa21.92■■□□□ 1.1
SQSTM1-209ENST00000504627 HMMRO75330 724 aa21.92■■□□□ 1.1
SQSTM1-209ENST00000504627 RPAP2Q8IXW5 612 aaPredicted RBP21.92■■□□□ 1.1
SQSTM1-209ENST00000504627 APBB1O00213 710 aa21.91■■□□□ 1.1
SQSTM1-209ENST00000504627 IDH1O75874 414 aaKnown RBP21.91■■□□□ 1.1
SQSTM1-209ENST00000504627 CAP1Q01518 475 aa21.91■■□□□ 1.1
SQSTM1-209ENST00000504627 HDAC1Q13547 482 aaPredicted RBP21.91■■□□□ 1.1
SQSTM1-209ENST00000504627 CENPQQ7L2Z9 268 aaPredicted RBP21.91■■□□□ 1.1
SQSTM1-209ENST00000504627 FASTKD5Q7L8L6 764 aaKnown RBP21.91■■□□□ 1.1
SQSTM1-209ENST00000504627 RHPN1Q8TCX5 695 aa21.91■■□□□ 1.1
SQSTM1-209ENST00000504627 IL1RAPL2Q9NP60 686 aa21.91■■□□□ 1.1
SQSTM1-209ENST00000504627 PIH1D3Q9NQM4 214 aaKnown RBP21.91■■□□□ 1.1
SQSTM1-209ENST00000504627 CPA4Q9UI42 421 aa21.91■■□□□ 1.1
SQSTM1-209ENST00000504627 AFG3L2Q9Y4W6 797 aa21.91■■□□□ 1.1
SQSTM1-209ENST00000504627 ECM2O94769 699 aaPredicted RBP21.9■■□□□ 1.1
SQSTM1-209ENST00000504627 PPP4CP60510 307 aa21.9■■□□□ 1.1
SQSTM1-209ENST00000504627 LACTBP83111 547 aaPredicted RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms