RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 DDX4Q9NQI0 724 aaKnown RBP19.27■□□□□ 0.68
UPF3A-208ENST00000484246 AATFQ9NY61 560 aaKnown RBP eCLIP19.27■□□□□ 0.68
UPF3A-208ENST00000484246 ANGEL1Q9UNK9 670 aaKnown RBP19.27■□□□□ 0.68
UPF3A-208ENST00000484246 UBE2Q2LH0YL09 131 aa19.26■□□□□ 0.67
UPF3A-208ENST00000484246 USP2O75604 605 aaPredicted RBP19.26■□□□□ 0.67
UPF3A-208ENST00000484246 ADD2P35612 726 aa19.26■□□□□ 0.67
UPF3A-208ENST00000484246 IREB2P48200 963 aaKnown RBP19.26■□□□□ 0.67
UPF3A-208ENST00000484246 TCP10Q12799 353 aa19.26■□□□□ 0.67
UPF3A-208ENST00000484246 TTLL12Q14166 644 aaPredicted RBP19.26■□□□□ 0.67
UPF3A-208ENST00000484246 SLC9C2Q5TAH2 1124 aa19.26■□□□□ 0.67
UPF3A-208ENST00000484246 DCAF15Q66K64 600 aa19.26■□□□□ 0.67
UPF3A-208ENST00000484246 CHD1LQ86WJ1 897 aa19.26■□□□□ 0.67
UPF3A-208ENST00000484246 RASAL3Q86YV0 1011 aa19.26■□□□□ 0.67
UPF3A-208ENST00000484246 TEX11Q8IYF3 940 aa19.26■□□□□ 0.67
UPF3A-208ENST00000484246 KBTBD3Q8NAB2 608 aa19.26■□□□□ 0.67
UPF3A-208ENST00000484246 SH3RF3Q8TEJ3 882 aaPredicted RBP19.26■□□□□ 0.67
UPF3A-208ENST00000484246 RIOK1Q9BRS2 568 aaKnown RBP19.26■□□□□ 0.67
UPF3A-208ENST00000484246 PDE1AP54750 535 aa19.25■□□□□ 0.67
UPF3A-208ENST00000484246 MAP3K10Q02779 954 aa19.25■□□□□ 0.67
UPF3A-208ENST00000484246 UBE3CQ15386 1083 aa19.25■□□□□ 0.67
UPF3A-208ENST00000484246 TSHZ3Q63HK5 1081 aa19.25■□□□□ 0.67
UPF3A-208ENST00000484246 SH3BP5LQ7L8J4 393 aa19.25■□□□□ 0.67
UPF3A-208ENST00000484246 ZFPM1Q8IX07 1006 aa19.25■□□□□ 0.67
UPF3A-208ENST00000484246 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.25■□□□□ 0.67
UPF3A-208ENST00000484246 LNPKQ9C0E8 428 aa19.25■□□□□ 0.67
UPF3A-208ENST00000484246 OSBPL5Q9H0X9 879 aaPredicted RBP19.25■□□□□ 0.67
UPF3A-208ENST00000484246 ZNF532Q9HCE3 1301 aa19.25■□□□□ 0.67
UPF3A-208ENST00000484246 ZNF157P51786 506 aaPredicted RBP19.24■□□□□ 0.67
UPF3A-208ENST00000484246 ZSCAN25Q6NSZ9 544 aa19.24■□□□□ 0.67
UPF3A-208ENST00000484246 PAXIP1Q6ZW49 1069 aaPredicted RBP19.24■□□□□ 0.67
UPF3A-208ENST00000484246 ANKRD13AQ8IZ07 590 aa19.24■□□□□ 0.67
UPF3A-208ENST00000484246 OSBPL3Q9H4L5 887 aa19.23■□□□□ 0.67
UPF3A-208ENST00000484246 ZNF112Q9UJU3 913 aa19.23■□□□□ 0.67
UPF3A-208ENST00000484246 FLT1P17948 1338 aa19.23■□□□□ 0.67
UPF3A-208ENST00000484246 PICALMQ13492 652 aa19.22■□□□□ 0.67
UPF3A-208ENST00000484246 PRKG1Q13976 671 aa19.22■□□□□ 0.67
UPF3A-208ENST00000484246 TICAM2Q86XR7 235 aa19.22■□□□□ 0.67
UPF3A-208ENST00000484246 MIGA1Q8NAN2 632 aa19.22■□□□□ 0.67
UPF3A-208ENST00000484246 CSRNP1Q96S65 589 aa19.22■□□□□ 0.67
UPF3A-208ENST00000484246 ZNF341Q9BYN7 854 aa19.22■□□□□ 0.67
UPF3A-208ENST00000484246 FZD1Q9UP38 647 aa19.22■□□□□ 0.67
UPF3A-208ENST00000484246 MAGEB6P1A0A0J9YX57 407 aa19.21■□□□□ 0.67
UPF3A-208ENST00000484246 DDTLA6NHG4 134 aaPredicted RBP19.21■□□□□ 0.67
UPF3A-208ENST00000484246 TBC1D12O60347 775 aa19.21■□□□□ 0.67
UPF3A-208ENST00000484246 ZFYP08048 801 aaPredicted RBP19.21■□□□□ 0.67
UPF3A-208ENST00000484246 DYNLL1P63167 89 aaKnown RBP19.21■□□□□ 0.67
UPF3A-208ENST00000484246 MAP3K9P80192 1104 aa19.21■□□□□ 0.67
UPF3A-208ENST00000484246 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.21■□□□□ 0.67
UPF3A-208ENST00000484246 REM2Q8IYK8 340 aaPredicted RBP19.21■□□□□ 0.67
UPF3A-208ENST00000484246 DHX36Q9H2U1 1008 aaKnown RBP19.21■□□□□ 0.67
UPF3A-208ENST00000484246 ZBTB48P10074 688 aaPredicted RBP19.2■□□□□ 0.66
UPF3A-208ENST00000484246 MAP2K1Q02750 393 aaPredicted RBP19.2■□□□□ 0.66
UPF3A-208ENST00000484246 LRRFIP1Q32MZ4 808 aaKnown RBP19.2■□□□□ 0.66
UPF3A-208ENST00000484246 B4GALNT3Q6L9W6 998 aa19.2■□□□□ 0.66
UPF3A-208ENST00000484246 METTL16Q86W50 562 aaKnown RBP19.2■□□□□ 0.66
UPF3A-208ENST00000484246 TNS4Q8IZW8 715 aa19.2■□□□□ 0.66
UPF3A-208ENST00000484246 TGFBRAP1Q8WUH2 860 aa19.2■□□□□ 0.66
UPF3A-208ENST00000484246 CLMNQ96JQ2 1002 aa19.2■□□□□ 0.66
UPF3A-208ENST00000484246 WBP1LQ9NX94 342 aa19.2■□□□□ 0.66
UPF3A-208ENST00000484246 AOC2O75106 756 aa19.19■□□□□ 0.66
UPF3A-208ENST00000484246 CENPBP07199 599 aaPredicted RBP19.19■□□□□ 0.66
UPF3A-208ENST00000484246 VGLL4Q14135 290 aa19.19■□□□□ 0.66
UPF3A-208ENST00000484246 NOL9Q5SY16 702 aaKnown RBP19.19■□□□□ 0.66
UPF3A-208ENST00000484246 SPRYD7Q5W111 196 aa19.19■□□□□ 0.66
UPF3A-208ENST00000484246 ZSCAN29Q8IWY8 852 aaPredicted RBP19.19■□□□□ 0.66
UPF3A-208ENST00000484246 WRNIP1Q96S55 665 aa19.19■□□□□ 0.66
UPF3A-208ENST00000484246 MYO5AQ9Y4I1 1855 aaKnown RBP19.19■□□□□ 0.66
UPF3A-208ENST00000484246 PCNTO95613 3336 aa19.18■□□□□ 0.66
UPF3A-208ENST00000484246 PLEKHM2Q8IWE5 1019 aa19.18■□□□□ 0.66
UPF3A-208ENST00000484246 APPBP2Q92624 585 aa19.18■□□□□ 0.66
UPF3A-208ENST00000484246 SLC10A4Q96EP9 437 aa19.18■□□□□ 0.66
UPF3A-208ENST00000484246 WNK4Q96J92 1243 aa19.18■□□□□ 0.66
UPF3A-208ENST00000484246 CRNKL1Q9BZJ0 848 aaKnown RBP19.18■□□□□ 0.66
UPF3A-208ENST00000484246 PI4KBQ9UBF8 816 aa19.18■□□□□ 0.66
UPF3A-208ENST00000484246 HERC5Q9UII4 1024 aaKnown RBP19.18■□□□□ 0.66
UPF3A-208ENST00000484246 CSADQ9Y600 493 aa19.18■□□□□ 0.66
UPF3A-208ENST00000484246 SNCAIPQ9Y6H5 919 aa19.18■□□□□ 0.66
UPF3A-208ENST00000484246 SPDYE5A6NIY4 337 aa19.17■□□□□ 0.66
UPF3A-208ENST00000484246 PHF20L1A8MW92 1017 aa19.17■□□□□ 0.66
UPF3A-208ENST00000484246 RNF113AO15541 343 aaKnown RBP19.17■□□□□ 0.66
UPF3A-208ENST00000484246 GRM1Q13255 1194 aa19.17■□□□□ 0.66
UPF3A-208ENST00000484246 MIGA2Q7L4E1 593 aa19.17■□□□□ 0.66
UPF3A-208ENST00000484246 MAPKAPK5Q8IW41 473 aa19.17■□□□□ 0.66
UPF3A-208ENST00000484246 LCORLQ8N3X6 602 aa19.17■□□□□ 0.66
UPF3A-208ENST00000484246 EVI5LQ96CN4 794 aa19.17■□□□□ 0.66
UPF3A-208ENST00000484246 ZIC5Q96T25 663 aa19.17■□□□□ 0.66
UPF3A-208ENST00000484246 TAOK2Q9UL54 1235 aa19.17■□□□□ 0.66
UPF3A-208ENST00000484246 OTOFQ9HC10 1997 aa19.17■□□□□ 0.66
UPF3A-208ENST00000484246 DDX60LQ5H9U9 1706 aaKnown RBP19.17■□□□□ 0.66
UPF3A-208ENST00000484246 CA12O43570 354 aa19.16■□□□□ 0.66
UPF3A-208ENST00000484246 MBD4O95243 580 aa19.16■□□□□ 0.66
UPF3A-208ENST00000484246 CHGBP05060 677 aa19.16■□□□□ 0.66
UPF3A-208ENST00000484246 HSPA1AP0DMV8 641 aaKnown RBP19.16■□□□□ 0.66
UPF3A-208ENST00000484246 HSPA1BP0DMV9 641 aaKnown RBP19.16■□□□□ 0.66
UPF3A-208ENST00000484246 USP5P45974 858 aa19.16■□□□□ 0.66
UPF3A-208ENST00000484246 KIF23Q02241 960 aaPredicted RBP19.16■□□□□ 0.66
UPF3A-208ENST00000484246 SLFNL1Q499Z3 407 aa19.16■□□□□ 0.66
UPF3A-208ENST00000484246 EHD4Q9H223 541 aa19.16■□□□□ 0.66
UPF3A-208ENST00000484246 FOCADQ5VW36 1801 aa19.16■□□□□ 0.66
UPF3A-208ENST00000484246 INPP5BP32019 993 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms