RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	PIH1D3	Q9NQM4	214 aa	Known RBP	6.14	□□□□□ -1.43
HDAC6-223	ENST00000480525	HELLS	Q9NRZ9	838 aa		6.14	□□□□□ -1.43
HDAC6-223	ENST00000480525	PPP4R2	Q9NY27	417 aa		6.14	□□□□□ -1.43
HDAC6-223	ENST00000480525	PI4KB	Q9UBF8	816 aa		6.14	□□□□□ -1.43
HDAC6-223	ENST00000480525	FAM198A	Q9UFP1	575 aa		6.14	□□□□□ -1.43
HDAC6-223	ENST00000480525	SYNPO2	Q9UMS6	1093 aa		6.14	□□□□□ -1.43
HDAC6-223	ENST00000480525	CLEC11A	Q9Y240	323 aa		6.14	□□□□□ -1.43
HDAC6-223	ENST00000480525	GOLIM4	O00461	696 aa		6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	RNF113A	O15541	343 aa	Known RBP	6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	CTNND1	O60716	968 aa	Known RBP	6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	EIF5B	O60841	1220 aa	Known RBP	6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	CELF2	O95319	508 aa	Known RBP	6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	IREB2	P48200	963 aa	Known RBP	6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	RBM5	P52756	815 aa	Known RBP eCLIP	6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	ALX1	Q15699	326 aa		6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	ZMYM1	Q5SVZ6	1142 aa		6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	TTC6	Q86TZ1	520 aa		6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	DNAJC5G	Q8N7S2	189 aa		6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	MAGEB6	Q8N7X4	407 aa		6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	KLRG1	Q96E93	195 aa		6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	GLIS2	Q9BZE0	524 aa	Predicted RBP	6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	CRNKL1	Q9BZJ0	848 aa	Known RBP	6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	BOLA2	Q9H3K6	86 aa		6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	ANTXR1	Q9H6X2	564 aa		6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	USP40	Q9NVE5	1235 aa		6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	ARPP21	Q9UBL0	812 aa	Predicted RBP	6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	SWAP70	Q9UH65	585 aa		6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	FLT1	P17948	1338 aa		6.13	□□□□□ -1.43
HDAC6-223	ENST00000480525	MAGEB6P1	A0A0J9YX57	407 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	TESPA1	A2RU30	521 aa	Predicted RBP	6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	SPDYE5	A6NIY4	337 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525		F8W031	263 aa	Predicted RBP	6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	SMARCA5	O60264	1052 aa	Predicted RBP	6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	SLC10A3	P09131	477 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	CYP7A1	P22680	504 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	RGS3	P49796	1198 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	PPAT	Q06203	517 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	GABPA	Q06546	454 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	DEFB115	Q30KQ5	88 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	PPP4R3B	Q5MIZ7	849 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	TTC22	Q5TAA0	569 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	RGMB	Q6NW40	437 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	TATDN1	Q6P1N9	297 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	TBC1D9	Q6ZT07	1266 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	ADGRA1	Q86SQ6	560 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	USP48	Q86UV5	1035 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	TEX11	Q8IYF3	940 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	DDRGK1	Q96HY6	314 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	PLIN4	Q96Q06	1357 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	STRBP	Q96SI9	672 aa	Known RBP	6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	ZNF341	Q9BYN7	854 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	LNPK	Q9C0E8	428 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	ZNF287	Q9HBT7	754 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	ZNF532	Q9HCE3	1301 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	SAGE1	Q9NXZ1	904 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	SLC45A1	Q9Y2W3	748 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	PCNT	O95613	3336 aa		6.12	□□□□□ -1.43
HDAC6-223	ENST00000480525	ASTN2	O75129	1339 aa	Predicted RBP	6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	PHF20L1	A8MW92	1017 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	FAM155A	B1AL88	458 aa	Predicted RBP	6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	ADM5	C9JUS6	153 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	APBB1	O00213	710 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	USP2	O75604	605 aa	Predicted RBP	6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	ALDH1A1	P00352	501 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	HLA-DOA	P06340	250 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	ASNS	P08243	561 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	FGR	P09769	529 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	HUNK	P57058	714 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	MAP3K9	P80192	1104 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	MAP2K1	Q02750	393 aa	Predicted RBP	6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	NFIA	Q12857	509 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	RBM26	Q5T8P6	1007 aa	Known RBP	6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	ERO1B	Q86YB8	467 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	AMOTL1	Q8IY63	956 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	IL27	Q8NEV9	243 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	AIDA	Q96BJ3	306 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	CCDC136	Q96JN2	1154 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	CCDC17	Q96LX7	622 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	CSRNP1	Q96S65	589 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	DNAJC2	Q99543	621 aa	Known RBP	6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	NACAP1	Q9BZK3	213 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	VEZT	Q9HBM0	779 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	DCP1A	Q9NPI6	582 aa	Predicted RBP	6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	AATF	Q9NY61	560 aa	Known RBP eCLIP	6.11	□□□□□ -1.43	2e-7	■■■■■ 44.3
HDAC6-223	ENST00000480525	SERPINB13	Q9UIV8	391 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	ANAPC4	Q9UJX5	808 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	KCNH4	Q9UQ05	1017 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	JAG2	Q9Y219	1238 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	PARP14	Q460N5	1801 aa		6.11	□□□□□ -1.43
HDAC6-223	ENST00000480525	MYH4	Q9Y623	1939 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	CLRN2	A0PK11	232 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	MANSC4	A6NHS7	340 aa	Predicted RBP	6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	PATL2	C9JE40	543 aa	Known RBP	6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	TRAF5	O00463	557 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	CXCL11	O14625	94 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	GPAA1	O43292	621 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	PDE4A	P27815	886 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	TM4SF4	P48230	202 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	SREBF2	Q12772	1141 aa		6.1	□□□□□ -1.43

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