RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 DDX58O95786 925 aaKnown RBP10.35□□□□□ -0.75
USP54-211ENST00000474929 NHLH1Q02575 133 aa10.35□□□□□ -0.75
USP54-211ENST00000474929 CHRNDQ07001 517 aa10.35□□□□□ -0.75
USP54-211ENST00000474929 TBC1D22AQ8WUA7 517 aa10.35□□□□□ -0.75
USP54-211ENST00000474929 BADQ92934 168 aa10.35□□□□□ -0.75
USP54-211ENST00000474929 MYD88Q99836 296 aa10.35□□□□□ -0.75
USP54-211ENST00000474929 EPHX3Q9H6B9 360 aa10.35□□□□□ -0.75
USP54-211ENST00000474929 SPINK5Q9NQ38 1064 aaPredicted RBP10.35□□□□□ -0.75
USP54-211ENST00000474929 ATP11BQ9Y2G3 1177 aa10.35□□□□□ -0.75
USP54-211ENST00000474929 TRIM32Q13049 653 aa10.34□□□□□ -0.75
USP54-211ENST00000474929 LHX8Q68G74 356 aa10.34□□□□□ -0.75
USP54-211ENST00000474929 SCYL3Q8IZE3 742 aa10.34□□□□□ -0.75
USP54-211ENST00000474929 PROCA1Q8NCQ7 364 aaPredicted RBP10.34□□□□□ -0.75
USP54-211ENST00000474929 CHMP4AQ9BY43 222 aa10.34□□□□□ -0.75
USP54-211ENST00000474929 GJD2Q9UKL4 321 aa10.34□□□□□ -0.75
USP54-211ENST00000474929 PTPRFP10586 1907 aa10.34□□□□□ -0.75
USP54-211ENST00000474929 AK9Q5TCS8 1911 aa10.33□□□□□ -0.76
USP54-211ENST00000474929 ITGA6P23229 1130 aa10.33□□□□□ -0.76
USP54-211ENST00000474929 ATN1P54259 1190 aaPredicted RBP10.33□□□□□ -0.76
USP54-211ENST00000474929 FAM151AQ8WW52 585 aa10.33□□□□□ -0.76
USP54-211ENST00000474929 LPAR1Q92633 364 aa10.33□□□□□ -0.76
USP54-211ENST00000474929 ZDHHC15Q96MV8 337 aa10.33□□□□□ -0.76
USP54-211ENST00000474929 NECAB3Q96P71 396 aaPredicted RBP10.33□□□□□ -0.76
USP54-211ENST00000474929 MRIQ9BWK5 157 aa10.33□□□□□ -0.76
USP54-211ENST00000474929 PDLIM7Q9NR12 457 aa10.33□□□□□ -0.76
USP54-211ENST00000474929 ZDBF2Q9HCK1 2354 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 A0A1B0GUL6 1792 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 KBTBD13C9JR72 458 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 ERC2O15083 957 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 IGFBP4P22692 258 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 RGS2P41220 211 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 CACNB2Q08289 660 aaPredicted RBP10.32□□□□□ -0.76
USP54-211ENST00000474929 RAB30Q15771 203 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 CSPP1Q1MSJ5 1256 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 C1orf53Q5VUE5 145 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 TDRD7Q8NHU6 1098 aaKnown RBP10.32□□□□□ -0.76
USP54-211ENST00000474929 HERVK_113Q902F9 699 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 APBA2Q99767 749 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 TBC1D2Q9BYX2 928 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 PRDM12Q9H4Q4 367 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 COG5Q9UP83 839 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 ZHX2Q9Y6X8 837 aa10.32□□□□□ -0.76
USP54-211ENST00000474929 PI4K2BG5E9Z4 385 aa10.31□□□□□ -0.76
USP54-211ENST00000474929 CYP2B6P20813 491 aa10.31□□□□□ -0.76
USP54-211ENST00000474929 FPGSQ05932 587 aa10.31□□□□□ -0.76
USP54-211ENST00000474929 NEXNQ0ZGT2 675 aa10.31□□□□□ -0.76
USP54-211ENST00000474929 SNX17Q15036 470 aa10.31□□□□□ -0.76
USP54-211ENST00000474929 MIGA2Q7L4E1 593 aa10.31□□□□□ -0.76
USP54-211ENST00000474929 ARRDC4Q8NCT1 418 aa10.31□□□□□ -0.76
USP54-211ENST00000474929 METTL22Q9BUU2 404 aaPredicted RBP10.31□□□□□ -0.76
USP54-211ENST00000474929 C11orf16Q9NQ32 467 aa10.31□□□□□ -0.76
USP54-211ENST00000474929 MORF4L1Q9UBU8 362 aa10.31□□□□□ -0.76
USP54-211ENST00000474929 DDX20Q9UHI6 824 aaKnown RBP10.31□□□□□ -0.76
USP54-211ENST00000474929 SUGT1Q9Y2Z0 365 aa10.31□□□□□ -0.76
USP54-211ENST00000474929 AFG3L2Q9Y4W6 797 aa10.31□□□□□ -0.76
USP54-211ENST00000474929 TACC3Q9Y6A5 838 aa10.31□□□□□ -0.76
USP54-211ENST00000474929 RLFQ13129 1914 aa10.31□□□□□ -0.76
USP54-211ENST00000474929 PLXNB2O15031 1838 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 LRRC37A2A6NM11 1700 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 TCF20Q9UGU0 1960 aaKnown RBP10.3□□□□□ -0.76
USP54-211ENST00000474929 DOCK1Q14185 1865 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 LOC285556D6RIA3 1793 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 ANKRD18BA2A2Z9 1011 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 PTPRAP18433 802 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 MAPK4P31152 587 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 CACNB3P54284 484 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 CCDC85BQ15834 202 aaPredicted RBP10.3□□□□□ -0.76
USP54-211ENST00000474929 MFSD14CQ5VZR4 134 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 CCDC129Q6ZRS4 1044 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 CCAR1Q8IX12 1150 aaKnown RBP10.3□□□□□ -0.76
USP54-211ENST00000474929 PLEKHF1Q96S99 279 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 JAG2Q9Y219 1238 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 DOCK2Q92608 1830 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 UTYO14607 1347 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 DNAH12Q6ZR08 3092 aa10.3□□□□□ -0.76
USP54-211ENST00000474929 FAM86C2PA6NEL3 165 aa10.29□□□□□ -0.76
USP54-211ENST00000474929 CCND3P30281 292 aaPredicted RBP10.29□□□□□ -0.76
USP54-211ENST00000474929 SLC39A5Q6ZMH5 540 aa10.29□□□□□ -0.76
USP54-211ENST00000474929 GTF3C2Q8WUA4 911 aaPredicted RBP10.29□□□□□ -0.76
USP54-211ENST00000474929 PLA2G12BQ9BX93 195 aa10.29□□□□□ -0.76
USP54-211ENST00000474929 MTIF3Q9H2K0 278 aaKnown RBP10.29□□□□□ -0.76
USP54-211ENST00000474929 MSRAQ9UJ68 235 aa10.29□□□□□ -0.76
USP54-211ENST00000474929 GLRX3O76003 335 aaKnown RBP10.28□□□□□ -0.76
USP54-211ENST00000474929 ALADP13716 330 aa10.28□□□□□ -0.76
USP54-211ENST00000474929 RAG1P15918 1043 aa10.28□□□□□ -0.76
USP54-211ENST00000474929 HIBADHP31937 336 aaKnown RBP10.28□□□□□ -0.76
USP54-211ENST00000474929 SKIV2LQ15477 1246 aaKnown RBP10.28□□□□□ -0.76
USP54-211ENST00000474929 TRIM60Q495X7 471 aa10.28□□□□□ -0.76
USP54-211ENST00000474929 LRRFIP2Q9Y608 721 aaKnown RBP10.28□□□□□ -0.76
USP54-211ENST00000474929 MYO9BQ13459 2157 aa10.28□□□□□ -0.76
USP54-211ENST00000474929 TRIM75PA6NK02 468 aa10.27□□□□□ -0.77
USP54-211ENST00000474929 CHL1O00533 1208 aa10.27□□□□□ -0.77
USP54-211ENST00000474929 GTPBP6O43824 516 aaPredicted RBP10.27□□□□□ -0.77
USP54-211ENST00000474929 CTNND1O60716 968 aaKnown RBP10.27□□□□□ -0.77
USP54-211ENST00000474929 CLTBP09497 229 aa10.27□□□□□ -0.77
USP54-211ENST00000474929 KCNQ1P51787 676 aa10.27□□□□□ -0.77
USP54-211ENST00000474929 HHIPL2Q6UWX4 724 aa10.27□□□□□ -0.77
USP54-211ENST00000474929 PBX4Q9BYU1 374 aa10.27□□□□□ -0.77
USP54-211ENST00000474929 SLC28A3Q9HAS3 691 aa10.27□□□□□ -0.77
USP54-211ENST00000474929 CWC22Q9HCG8 908 aaKnown RBP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms