RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	TLR7	Q9NYK1	1049 aa	Known RBP	14.07	□□□□□ -0.16
CPNE1-222	ENST00000473373	DBNL	Q9UJU6	430 aa	Known RBP	14.07	□□□□□ -0.16
CPNE1-222	ENST00000473373	RAB11FIP3	O75154	756 aa		14.06	□□□□□ -0.16
CPNE1-222	ENST00000473373	WDHD1	O75717	1129 aa	Predicted RBP	14.06	□□□□□ -0.16
CPNE1-222	ENST00000473373	ALDH1A1	P00352	501 aa		14.06	□□□□□ -0.16
CPNE1-222	ENST00000473373	ZAP70	P43403	619 aa		14.06	□□□□□ -0.16
CPNE1-222	ENST00000473373	INHBE	P58166	350 aa		14.06	□□□□□ -0.16
CPNE1-222	ENST00000473373	NFIA	Q12857	509 aa		14.06	□□□□□ -0.16
CPNE1-222	ENST00000473373	VGLL4	Q14135	290 aa		14.06	□□□□□ -0.16
CPNE1-222	ENST00000473373	PRPF38B	Q5VTL8	546 aa	Known RBP	14.06	□□□□□ -0.16
CPNE1-222	ENST00000473373	TEX11	Q8IYF3	940 aa		14.06	□□□□□ -0.16
CPNE1-222	ENST00000473373	GAK	O14976	1311 aa		14.06	□□□□□ -0.16
CPNE1-222	ENST00000473373	FOCAD	Q5VW36	1801 aa		14.06	□□□□□ -0.16
CPNE1-222	ENST00000473373	DOCK1	Q14185	1865 aa		14.06	□□□□□ -0.16
CPNE1-222	ENST00000473373	NSUN4	Q96CB9	384 aa	Known RBP	14.05	□□□□□ -0.16
CPNE1-222	ENST00000473373	DNAJC2	Q99543	621 aa	Known RBP	14.05	□□□□□ -0.16
CPNE1-222	ENST00000473373	TRIM34	Q9BYJ4	488 aa		14.05	□□□□□ -0.16
CPNE1-222	ENST00000473373	AATF	Q9NY61	560 aa	Known RBP eCLIP	14.05	□□□□□ -0.16
CPNE1-222	ENST00000473373	ZBTB47	Q9UFB7	747 aa	Predicted RBP	14.05	□□□□□ -0.16
CPNE1-222	ENST00000473373	ZBTB22	O15209	634 aa		14.04	□□□□□ -0.16
CPNE1-222	ENST00000473373	ENTPD3	O75355	529 aa		14.04	□□□□□ -0.16
CPNE1-222	ENST00000473373	PLCG2	P16885	1265 aa		14.04	□□□□□ -0.16
CPNE1-222	ENST00000473373	TM4SF4	P48230	202 aa		14.04	□□□□□ -0.16
CPNE1-222	ENST00000473373	GTF2A2	P52657	109 aa		14.04	□□□□□ -0.16
CPNE1-222	ENST00000473373	PKN2	Q16513	984 aa	Known RBP	14.04	□□□□□ -0.16
CPNE1-222	ENST00000473373	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	14.04	□□□□□ -0.16
CPNE1-222	ENST00000473373	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	14.04	□□□□□ -0.16	2e-14	■□□□□ 9.9
CPNE1-222	ENST00000473373	ZKSCAN4	Q969J2	545 aa	Predicted RBP	14.04	□□□□□ -0.16
CPNE1-222	ENST00000473373	FAM198A	Q9UFP1	575 aa		14.04	□□□□□ -0.16
CPNE1-222	ENST00000473373	MYH8	P13535	1937 aa		14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	GPR75-ASB3	A0A0A6YYF3	556 aa		14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	CCL15-CCL14	A0A0B4J2E2	113 aa		14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	GPR25	O00155	361 aa		14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	CYP2E1	P05181	493 aa	Predicted RBP	14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	CYP7A1	P22680	504 aa		14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	RRP1	P56182	461 aa	Known RBP	14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	MAP3K12	Q12852	859 aa		14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	CCL15	Q16663	113 aa		14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	ERO1B	Q86YB8	467 aa		14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	IFNL1	Q8IU54	200 aa		14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	FAM163A	Q96GL9	167 aa	Predicted RBP	14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	ZNF512B	Q96KM6	892 aa	Predicted RBP	14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	IDI2	Q9BXS1	227 aa		14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	LRRCC1	Q9C099	1032 aa		14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	R3HDML	Q9H3Y0	253 aa		14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	PICK1	Q9NRD5	415 aa		14.03	□□□□□ -0.16
CPNE1-222	ENST00000473373	NAV1	Q8NEY1	1877 aa		14.02	□□□□□ -0.16
CPNE1-222	ENST00000473373	INPP5B	P32019	993 aa		14.02	□□□□□ -0.17
CPNE1-222	ENST00000473373	TTF1	Q15361	905 aa	Predicted RBP	14.02	□□□□□ -0.17
CPNE1-222	ENST00000473373	ZFPM1	Q8IX07	1006 aa		14.02	□□□□□ -0.17
CPNE1-222	ENST00000473373	MAGEB6	Q8N7X4	407 aa		14.02	□□□□□ -0.17
CPNE1-222	ENST00000473373	PIH1D3	Q9NQM4	214 aa	Known RBP	14.02	□□□□□ -0.17
CPNE1-222	ENST00000473373	NDUFB9	Q9Y6M9	179 aa		14.02	□□□□□ -0.17
CPNE1-222	ENST00000473373	PDE4DIP	Q5VU43	2346 aa		14.01	□□□□□ -0.17
CPNE1-222	ENST00000473373	MAP4K4	O95819	1239 aa	Predicted RBP	14.01	□□□□□ -0.17
CPNE1-222	ENST00000473373	GJA5	P36382	358 aa		14.01	□□□□□ -0.17
CPNE1-222	ENST00000473373	USP5	P45974	858 aa		14.01	□□□□□ -0.17
CPNE1-222	ENST00000473373	SNAPC2	Q13487	334 aa		14.01	□□□□□ -0.17
CPNE1-222	ENST00000473373	SIRT2	Q8IXJ6	389 aa		14.01	□□□□□ -0.17
CPNE1-222	ENST00000473373	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	14.01	□□□□□ -0.17
CPNE1-222	ENST00000473373	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	14.01	□□□□□ -0.17
CPNE1-222	ENST00000473373	GPATCH3	Q96I76	525 aa		14.01	□□□□□ -0.17
CPNE1-222	ENST00000473373	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	14.01	□□□□□ -0.17
CPNE1-222	ENST00000473373	DDX4	Q9NQI0	724 aa	Known RBP	14.01	□□□□□ -0.17
CPNE1-222	ENST00000473373	SPDYE5	A6NIY4	337 aa		14	□□□□□ -0.17
CPNE1-222	ENST00000473373	FKTN	O75072	461 aa		14	□□□□□ -0.17
CPNE1-222	ENST00000473373	CETP	P11597	493 aa		14	□□□□□ -0.17
CPNE1-222	ENST00000473373	TAF1C	Q15572	869 aa	Predicted RBP	14	□□□□□ -0.17
CPNE1-222	ENST00000473373	FBXO46	Q6PJ61	603 aa	Predicted RBP	14	□□□□□ -0.17
CPNE1-222	ENST00000473373	MAPKAPK5	Q8IW41	473 aa		14	□□□□□ -0.17
CPNE1-222	ENST00000473373	MIGA1	Q8NAN2	632 aa		14	□□□□□ -0.17
CPNE1-222	ENST00000473373	TGFBRAP1	Q8WUH2	860 aa		14	□□□□□ -0.17
CPNE1-222	ENST00000473373	SNCAIP	Q9Y6H5	919 aa		14	□□□□□ -0.17
CPNE1-222	ENST00000473373	PTPRF	P10586	1907 aa		14	□□□□□ -0.17
CPNE1-222	ENST00000473373	DDTL	A6NHG4	134 aa	Predicted RBP	13.99	□□□□□ -0.17
CPNE1-222	ENST00000473373	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.99	□□□□□ -0.17	2e-7	■■■■□ 20.3
CPNE1-222	ENST00000473373	GOLIM4	O00461	696 aa		13.99	□□□□□ -0.17
CPNE1-222	ENST00000473373	SMARCA5	O60264	1052 aa	Predicted RBP	13.99	□□□□□ -0.17
CPNE1-222	ENST00000473373	RHBDL3	P58872	404 aa		13.99	□□□□□ -0.17
CPNE1-222	ENST00000473373	PPIL2	Q13356	520 aa		13.99	□□□□□ -0.17
CPNE1-222	ENST00000473373	SLC4A8	Q2Y0W8	1093 aa		13.99	□□□□□ -0.17
CPNE1-222	ENST00000473373	ZNF384	Q8TF68	577 aa		13.99	□□□□□ -0.17
CPNE1-222	ENST00000473373	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.99	□□□□□ -0.17
CPNE1-222	ENST00000473373	BOLA2	Q9H3K6	86 aa		13.99	□□□□□ -0.17
CPNE1-222	ENST00000473373	ZFYVE28	Q9HCC9	887 aa		13.99	□□□□□ -0.17
CPNE1-222	ENST00000473373	IRF6	O14896	467 aa		13.98	□□□□□ -0.17
CPNE1-222	ENST00000473373	IGSF3	O75054	1194 aa		13.98	□□□□□ -0.17
CPNE1-222	ENST00000473373	HLA-DOA	P06340	250 aa		13.98	□□□□□ -0.17
CPNE1-222	ENST00000473373	DYNLL1	P63167	89 aa	Known RBP	13.98	□□□□□ -0.17
CPNE1-222	ENST00000473373	PPAT	Q06203	517 aa		13.98	□□□□□ -0.17
CPNE1-222	ENST00000473373	CERS3	Q8IU89	383 aa		13.98	□□□□□ -0.17
CPNE1-222	ENST00000473373	SCYL3	Q8IZE3	742 aa		13.98	□□□□□ -0.17
CPNE1-222	ENST00000473373	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.98	□□□□□ -0.17	2e-7	■■■■■ 40.9
CPNE1-222	ENST00000473373	ANTXR1	Q9H6X2	564 aa		13.98	□□□□□ -0.17
CPNE1-222	ENST00000473373	SAP30BP	Q9UHR5	308 aa	Known RBP	13.98	□□□□□ -0.17
CPNE1-222	ENST00000473373	BAZ2A	Q9UIF9	1905 aa	Known RBP	13.98	□□□□□ -0.17
CPNE1-222	ENST00000473373	PHIP	Q8WWQ0	1821 aa		13.97	□□□□□ -0.17
CPNE1-222	ENST00000473373	FAM196B	A6NMK8	535 aa		13.97	□□□□□ -0.17
CPNE1-222	ENST00000473373	CRHR2	Q13324	411 aa		13.97	□□□□□ -0.17
CPNE1-222	ENST00000473373	NOM1	Q5C9Z4	860 aa	Known RBP	13.97	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 134.3 ms