RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 BNIP3Q12983 259 aa7.72□□□□□ -1.17
CCDC88A-210ENST00000468534 PLCL1Q15111 1095 aa7.72□□□□□ -1.17
CCDC88A-210ENST00000468534 ARHGAP27Q6ZUM4 889 aa7.72□□□□□ -1.17
CCDC88A-210ENST00000468534 ACSBG1Q96GR2 724 aa7.72□□□□□ -1.17
CCDC88A-210ENST00000468534 BTBD11A6QL63 1104 aa7.71□□□□□ -1.18
CCDC88A-210ENST00000468534 NEFMP07197 916 aa7.71□□□□□ -1.18
CCDC88A-210ENST00000468534 XRCC5P13010 732 aaKnown RBP7.71□□□□□ -1.18
CCDC88A-210ENST00000468534 YBX3P16989 372 aaKnown RBP eCLIP7.71□□□□□ -1.18
CCDC88A-210ENST00000468534 U3KQE9 123 aa7.71□□□□□ -1.18
CCDC88A-210ENST00000468534 ARNTP27540 789 aa7.7□□□□□ -1.18
CCDC88A-210ENST00000468534 MAPK8P45983 427 aa7.7□□□□□ -1.18
CCDC88A-210ENST00000468534 DSC3Q14574 896 aa7.7□□□□□ -1.18
CCDC88A-210ENST00000468534 ENOX2Q16206 610 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-210ENST00000468534 MPRIPQ6WCQ1 1025 aa7.7□□□□□ -1.18
CCDC88A-210ENST00000468534 TPTE2Q6XPS3 522 aa7.7□□□□□ -1.18
CCDC88A-210ENST00000468534 SPRED2Q7Z698 418 aa7.7□□□□□ -1.18
CCDC88A-210ENST00000468534 GPBAR1Q8TDU6 330 aa7.7□□□□□ -1.18
CCDC88A-210ENST00000468534 PCOLCE2Q9UKZ9 415 aa7.7□□□□□ -1.18
CCDC88A-210ENST00000468534 GNEQ9Y223 722 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-210ENST00000468534 CSADQ9Y600 493 aa7.7□□□□□ -1.18
CCDC88A-210ENST00000468534 TREHO43280 583 aa7.69□□□□□ -1.18
CCDC88A-210ENST00000468534 FBXO24O75426 580 aa7.69□□□□□ -1.18
CCDC88A-210ENST00000468534 NME2P22392 152 aa7.69□□□□□ -1.18
CCDC88A-210ENST00000468534 CD96P40200 585 aa7.69□□□□□ -1.18
CCDC88A-210ENST00000468534 WFDC3Q8IUB2 231 aa7.69□□□□□ -1.18
CCDC88A-210ENST00000468534 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.69□□□□□ -1.18
CCDC88A-210ENST00000468534 STK11IPQ8N1F8 1099 aa7.69□□□□□ -1.18
CCDC88A-210ENST00000468534 TOP6BLQ8N6T0 577 aa7.69□□□□□ -1.18
CCDC88A-210ENST00000468534 NETO1Q8TDF5 533 aa7.69□□□□□ -1.18
CCDC88A-210ENST00000468534 ISL2Q96A47 359 aa7.69□□□□□ -1.18
CCDC88A-210ENST00000468534 ASIC4Q96FT7 647 aa7.69□□□□□ -1.18
CCDC88A-210ENST00000468534 SETDB2Q96T68 719 aa7.69□□□□□ -1.18
CCDC88A-210ENST00000468534 EMILIN2Q9BXX0 1053 aa7.69□□□□□ -1.18
CCDC88A-210ENST00000468534 BRD1O95696 1058 aa7.68□□□□□ -1.18
CCDC88A-210ENST00000468534 ITGB5P18084 799 aa7.68□□□□□ -1.18
CCDC88A-210ENST00000468534 ZNF792Q3KQV3 632 aa7.68□□□□□ -1.18
CCDC88A-210ENST00000468534 OGFOD2Q6N063 350 aa7.68□□□□□ -1.18
CCDC88A-210ENST00000468534 DUSP23Q9BVJ7 150 aa7.68□□□□□ -1.18
CCDC88A-210ENST00000468534 KRTAP9-9Q9BYP9 154 aa7.68□□□□□ -1.18
CCDC88A-210ENST00000468534 KRTAP9-4Q9BYQ2 154 aa7.68□□□□□ -1.18
CCDC88A-210ENST00000468534 PICK1Q9NRD5 415 aa7.68□□□□□ -1.18
CCDC88A-210ENST00000468534 CD8BP10966 210 aa7.67□□□□□ -1.18
CCDC88A-210ENST00000468534 ITIH2P19823 946 aa7.67□□□□□ -1.18
CCDC88A-210ENST00000468534 ZC3H12AQ5D1E8 599 aaKnown RBP7.67□□□□□ -1.18
CCDC88A-210ENST00000468534 C3orf58Q8NDZ4 430 aa7.67□□□□□ -1.18
CCDC88A-210ENST00000468534 GRIN3AQ8TCU5 1115 aa7.67□□□□□ -1.18
CCDC88A-210ENST00000468534 MISP3Q96FF7 219 aa7.67□□□□□ -1.18
CCDC88A-210ENST00000468534 PAGE1O75459 146 aa7.66□□□□□ -1.18
CCDC88A-210ENST00000468534 JUNBP17275 347 aaPredicted RBP7.66□□□□□ -1.18
CCDC88A-210ENST00000468534 GSTT1P30711 240 aa7.66□□□□□ -1.18
CCDC88A-210ENST00000468534 PPM1JQ5JR12 505 aa7.66□□□□□ -1.18
CCDC88A-210ENST00000468534 RNF214Q8ND24 703 aa7.66□□□□□ -1.18
CCDC88A-210ENST00000468534 NECAB3Q96P71 396 aaPredicted RBP7.66□□□□□ -1.18
CCDC88A-210ENST00000468534 DCDC2CA8MYV0 355 aa7.65□□□□□ -1.18
CCDC88A-210ENST00000468534 ERVK-24P63145 666 aa7.65□□□□□ -1.18
CCDC88A-210ENST00000468534 ZNF252P-AS1Q0IIN9 211 aa7.65□□□□□ -1.18
CCDC88A-210ENST00000468534 AOC3Q16853 763 aa7.65□□□□□ -1.18
CCDC88A-210ENST00000468534 ENC1O14682 589 aa7.64□□□□□ -1.19
CCDC88A-210ENST00000468534 PAPLNO95428 1278 aa7.64□□□□□ -1.19
CCDC88A-210ENST00000468534 CEACAM5P06731 702 aa7.64□□□□□ -1.19
CCDC88A-210ENST00000468534 IFI16Q16666 785 aaKnown RBP7.64□□□□□ -1.19
CCDC88A-210ENST00000468534 C12orf40Q86WS4 652 aa7.64□□□□□ -1.19
CCDC88A-210ENST00000468534 OSBPL7Q9BZF2 842 aa7.64□□□□□ -1.19
CCDC88A-210ENST00000468534 RC3H2Q9HBD1 1191 aaKnown RBP7.64□□□□□ -1.19
CCDC88A-210ENST00000468534 WWC3Q9ULE0 1092 aa7.64□□□□□ -1.19
CCDC88A-210ENST00000468534 LOC105371045A0A1W2PR82 267 aa7.63□□□□□ -1.19
CCDC88A-210ENST00000468534 OXCT1P55809 520 aa7.63□□□□□ -1.19
CCDC88A-210ENST00000468534 PRKCQQ04759 706 aa7.63□□□□□ -1.19
CCDC88A-210ENST00000468534 UBE3DQ7Z6J8 389 aa7.63□□□□□ -1.19
CCDC88A-210ENST00000468534 ZSCAN29Q8IWY8 852 aaPredicted RBP7.63□□□□□ -1.19
CCDC88A-210ENST00000468534 HRASLS5Q96KN8 279 aa7.63□□□□□ -1.19
CCDC88A-210ENST00000468534 CEP44Q9C0F1 390 aa7.63□□□□□ -1.19
CCDC88A-210ENST00000468534 VAV3Q9UKW4 847 aa7.63□□□□□ -1.19
CCDC88A-210ENST00000468534 PCDHA4Q9UN74 947 aa7.63□□□□□ -1.19
CCDC88A-210ENST00000468534 PLAGL2Q9UPG8 496 aa7.63□□□□□ -1.19
CCDC88A-210ENST00000468534 SAMM50Q9Y512 469 aa7.63□□□□□ -1.19
CCDC88A-210ENST00000468534 IVNS1ABPQ9Y6Y0 642 aa7.63□□□□□ -1.19
CCDC88A-210ENST00000468534 BMP6P22004 513 aa7.62□□□□□ -1.19
CCDC88A-210ENST00000468534 FUT4P22083 530 aa7.62□□□□□ -1.19
CCDC88A-210ENST00000468534 LLGL2Q6P1M3 1020 aa7.62□□□□□ -1.19
CCDC88A-210ENST00000468534 PI4K2BQ8TCG2 481 aa7.62□□□□□ -1.19
CCDC88A-210ENST00000468534 ADAMTS6Q9UKP5 1117 aa7.62□□□□□ -1.19
CCDC88A-210ENST00000468534 TMEM265A0A087WTH1 108 aa7.61□□□□□ -1.19
CCDC88A-210ENST00000468534 BIN1O00499 593 aa7.61□□□□□ -1.19
CCDC88A-210ENST00000468534 RNASE1P07998 156 aaKnown RBP7.61□□□□□ -1.19
CCDC88A-210ENST00000468534 CELA3AP09093 270 aa7.61□□□□□ -1.19
CCDC88A-210ENST00000468534 FMR1Q06787 632 aaKnown RBP eCLIP7.61□□□□□ -1.19
CCDC88A-210ENST00000468534 RASIP1Q5U651 963 aa7.61□□□□□ -1.19
CCDC88A-210ENST00000468534 FBF1Q8TES7 1133 aa7.61□□□□□ -1.19
CCDC88A-210ENST00000468534 HEXIM2Q96MH2 286 aaKnown RBP7.61□□□□□ -1.19
CCDC88A-210ENST00000468534 MBNL3Q9NUK0 354 aaKnown RBP7.61□□□□□ -1.19
CCDC88A-210ENST00000468534 TRIM37O94972 964 aa7.6□□□□□ -1.19
CCDC88A-210ENST00000468534 ATP2B2Q01814 1243 aa7.6□□□□□ -1.19
CCDC88A-210ENST00000468534 ALG1LQ6GMV1 187 aa7.6□□□□□ -1.19
CCDC88A-210ENST00000468534 CDC37L1Q7L3B6 337 aa7.6□□□□□ -1.19
CCDC88A-210ENST00000468534 ELMO3Q96BJ8 720 aa7.6□□□□□ -1.19
CCDC88A-210ENST00000468534 SRCIN1Q9C0H9 1055 aa7.6□□□□□ -1.19
CCDC88A-210ENST00000468534 MKNK2Q9HBH9 465 aa7.6□□□□□ -1.19
CCDC88A-210ENST00000468534 PRDM10Q9NQV6 1147 aa7.6□□□□□ -1.19
CCDC88A-210ENST00000468534 PPM1HQ9ULR3 514 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms