RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 SH3BP5LQ7L8J4 393 aa23.8■■□□□ 1.4
USP40-207ENST00000450940 ERC1Q8IUD2 1116 aa23.8■■□□□ 1.4
USP40-207ENST00000450940 DDX4Q9NQI0 724 aaKnown RBP23.8■■□□□ 1.4
USP40-207ENST00000450940 COG6Q9Y2V7 657 aa23.8■■□□□ 1.4
USP40-207ENST00000450940 MAST2Q6P0Q8 1798 aa23.79■■□□□ 1.4
USP40-207ENST00000450940 PPATQ06203 517 aa23.79■■□□□ 1.4
USP40-207ENST00000450940 NOL9Q5SY16 702 aaKnown RBP23.79■■□□□ 1.4
USP40-207ENST00000450940 SNRKQ9NRH2 765 aa23.79■■□□□ 1.4
USP40-207ENST00000450940 RAI14Q9P0K7 980 aa23.79■■□□□ 1.4
USP40-207ENST00000450940 LRP2BPQ9P2M1 347 aa23.79■■□□□ 1.4
USP40-207ENST00000450940 CCL15-CCL14A0A0B4J2E2 113 aa23.78■■□□□ 1.4
USP40-207ENST00000450940 PHF20L1A8MW92 1017 aa23.78■■□□□ 1.4
USP40-207ENST00000450940 IRF6O14896 467 aa23.78■■□□□ 1.4
USP40-207ENST00000450940 CYP2E1P05181 493 aaPredicted RBP23.78■■□□□ 1.4
USP40-207ENST00000450940 CRHR2Q13324 411 aa23.78■■□□□ 1.4
USP40-207ENST00000450940 CCL15Q16663 113 aa23.78■■□□□ 1.4
USP40-207ENST00000450940 HSP90AB4PQ58FF6 505 aa23.78■■□□□ 1.4
USP40-207ENST00000450940 CCDC8Q9H0W5 538 aaPredicted RBP23.78■■□□□ 1.4
USP40-207ENST00000450940 CHMP4BQ9H444 224 aaKnown RBP23.78■■□□□ 1.4
USP40-207ENST00000450940 TLR7Q9NYK1 1049 aaKnown RBP23.78■■□□□ 1.4
USP40-207ENST00000450940 EXOC6BQ9Y2D4 811 aa23.78■■□□□ 1.4
USP40-207ENST00000450940 DDTLA6NHG4 134 aaPredicted RBP23.77■■□□□ 1.4
USP40-207ENST00000450940 CETPP11597 493 aa23.77■■□□□ 1.4
USP40-207ENST00000450940 RGS19P49795 217 aa23.77■■□□□ 1.4
USP40-207ENST00000450940 PDE3AQ14432 1141 aa23.77■■□□□ 1.4
USP40-207ENST00000450940 SIRT2Q8IXJ6 389 aa23.77■■□□□ 1.4
USP40-207ENST00000450940 ZCCHC17Q9NP64 241 aaKnown RBP23.77■■□□□ 1.4
USP40-207ENST00000450940 COL2A1P02458 1487 aaPredicted RBP23.76■■□□□ 1.39
USP40-207ENST00000450940 SNAPC2Q13487 334 aa23.76■■□□□ 1.39
USP40-207ENST00000450940 ZAP70P43403 619 aa23.75■■□□□ 1.39
USP40-207ENST00000450940 FAM43AQ8N2R8 423 aa23.75■■□□□ 1.39
USP40-207ENST00000450940 KCNH4Q9UQ05 1017 aa23.75■■□□□ 1.39
USP40-207ENST00000450940 TBC1D12O60347 775 aa23.74■■□□□ 1.39
USP40-207ENST00000450940 HMMRO75330 724 aa23.74■■□□□ 1.39
USP40-207ENST00000450940 PPP4CP60510 307 aa23.74■■□□□ 1.39
USP40-207ENST00000450940 PICALMQ13492 652 aa23.74■■□□□ 1.39
USP40-207ENST00000450940 NAA16Q6N069 864 aaPredicted RBP23.74■■□□□ 1.39
USP40-207ENST00000450940 ZSCAN29Q8IWY8 852 aaPredicted RBP23.74■■□□□ 1.39
USP40-207ENST00000450940 RHPN1Q8TCX5 695 aa23.74■■□□□ 1.39
USP40-207ENST00000450940 CDK5RAP2Q96SN8 1893 aa23.74■■□□□ 1.39
USP40-207ENST00000450940 FBXO46Q6PJ61 603 aaPredicted RBP23.73■■□□□ 1.39
USP40-207ENST00000450940 PIH1D3Q9NQM4 214 aaKnown RBP23.73■■□□□ 1.39
USP40-207ENST00000450940 FOCADQ5VW36 1801 aa23.73■■□□□ 1.39
USP40-207ENST00000450940 TAF1CQ15572 869 aaPredicted RBP23.72■■□□□ 1.39
USP40-207ENST00000450940 C20orf194Q5TEA3 1177 aa23.72■■□□□ 1.39
USP40-207ENST00000450940 AACSQ86V21 672 aa23.72■■□□□ 1.39
USP40-207ENST00000450940 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.72■■□□□ 1.39
USP40-207ENST00000450940 ZFYVE28Q9HCC9 887 aa23.72■■□□□ 1.39
USP40-207ENST00000450940 HPS5Q9UPZ3 1129 aa23.72■■□□□ 1.39
USP40-207ENST00000450940 DOCK1Q14185 1865 aa23.71■■□□□ 1.39
USP40-207ENST00000450940 BTBD19C9JJ37 291 aa23.71■■□□□ 1.39
USP40-207ENST00000450940 BAG3O95817 575 aa23.71■■□□□ 1.39
USP40-207ENST00000450940 SP3Q02447 781 aa23.71■■□□□ 1.39
USP40-207ENST00000450940 SCYL3Q8IZE3 742 aa23.71■■□□□ 1.39
USP40-207ENST00000450940 ERO1AQ96HE7 468 aa23.71■■□□□ 1.39
USP40-207ENST00000450940 OSBPL5Q9H0X9 879 aaPredicted RBP23.71■■□□□ 1.39
USP40-207ENST00000450940 PHIPQ8WWQ0 1821 aa23.7■■□□□ 1.39
USP40-207ENST00000450940 CXCL11O14625 94 aa23.7■■□□□ 1.38
USP40-207ENST00000450940 CTNND1O60716 968 aaKnown RBP23.7■■□□□ 1.38
USP40-207ENST00000450940 PLCG2P16885 1265 aa23.7■■□□□ 1.38
USP40-207ENST00000450940 MOGSQ13724 837 aa23.7■■□□□ 1.38
USP40-207ENST00000450940 TMED8Q6PL24 325 aaPredicted RBP23.7■■□□□ 1.38
USP40-207ENST00000450940 ADGRA1Q86SQ6 560 aa23.7■■□□□ 1.38
USP40-207ENST00000450940 TEX11Q8IYF3 940 aa23.7■■□□□ 1.38
USP40-207ENST00000450940 SH3RF3Q8TEJ3 882 aaPredicted RBP23.7■■□□□ 1.38
USP40-207ENST00000450940 KIF1BPQ96EK5 621 aa23.7■■□□□ 1.38
USP40-207ENST00000450940 NOL10Q9BSC4 688 aaKnown RBP23.7■■□□□ 1.38
USP40-207ENST00000450940 IL1RAPL2Q9NP60 686 aa23.7■■□□□ 1.38
USP40-207ENST00000450940 RAB11FIP3O75154 756 aa23.69■■□□□ 1.38
USP40-207ENST00000450940 SLURP2P0DP57 97 aa23.69■■□□□ 1.38
USP40-207ENST00000450940 OTOP1Q7RTM1 612 aa23.69■■□□□ 1.38
USP40-207ENST00000450940 ANKRD23Q86SG2 305 aa23.69■■□□□ 1.38
USP40-207ENST00000450940 TLR2O60603 784 aa23.68■■□□□ 1.38
USP40-207ENST00000450940 PTPRAP18433 802 aa23.68■■□□□ 1.38
USP40-207ENST00000450940 CLASRPQ8N2M8 674 aaKnown RBP23.68■■□□□ 1.38
USP40-207ENST00000450940 AATFQ9NY61 560 aaKnown RBP eCLIP23.68■■□□□ 1.38
USP40-207ENST00000450940 PTPRFP10586 1907 aa23.68■■□□□ 1.38
USP40-207ENST00000450940 CD99L2Q8TCZ2 262 aa23.67■■□□□ 1.38
USP40-207ENST00000450940 PICK1Q9NRD5 415 aa23.67■■□□□ 1.38
USP40-207ENST00000450940 AFG3L2Q9Y4W6 797 aa23.67■■□□□ 1.38
USP40-207ENST00000450940 TRIM17Q9Y577 477 aa23.67■■□□□ 1.38
USP40-207ENST00000450940 ZHX2Q9Y6X8 837 aa23.67■■□□□ 1.38
USP40-207ENST00000450940 SIPA1L1O43166 1804 aa23.67■■□□□ 1.38
USP40-207ENST00000450940 CAP1Q01518 475 aa23.66■■□□□ 1.38
USP40-207ENST00000450940 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.66■■□□□ 1.38
USP40-207ENST00000450940 DHX36Q9H2U1 1008 aaKnown RBP23.66■■□□□ 1.38
USP40-207ENST00000450940 ANTXR1Q9H6X2 564 aa23.66■■□□□ 1.38
USP40-207ENST00000450940 CYP7A1P22680 504 aa23.65■■□□□ 1.38
USP40-207ENST00000450940 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.65■■□□□ 1.38
USP40-207ENST00000450940 HERC5Q9UII4 1024 aaKnown RBP23.65■■□□□ 1.38
USP40-207ENST00000450940 NDUFB9Q9Y6M9 179 aa23.65■■□□□ 1.38
USP40-207ENST00000450940 HTTP42858 3142 aa23.64■■□□□ 1.38
USP40-207ENST00000450940 ATAD5Q96QE3 1844 aa23.64■■□□□ 1.38
USP40-207ENST00000450940 A0A0G2JLL6 359 aaPredicted RBP23.64■■□□□ 1.37
USP40-207ENST00000450940 IDH1O75874 414 aaKnown RBP23.64■■□□□ 1.37
USP40-207ENST00000450940 GPAT2Q6NUI2 795 aa23.64■■□□□ 1.37
USP40-207ENST00000450940 PRRT2Q7Z6L0 340 aaPredicted RBP23.64■■□□□ 1.37
USP40-207ENST00000450940 METTL16Q86W50 562 aaKnown RBP23.64■■□□□ 1.37
USP40-207ENST00000450940 CERS3Q8IU89 383 aa23.64■■□□□ 1.37
USP40-207ENST00000450940 TGFBRAP1Q8WUH2 860 aa23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms