RNA–Protein interactions for RNA: ENST00000412272.6

HERC4-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-205ENST00000412272 COMMD8Q9NX08 183 aa5.92□□□□□ -1.46
HERC4-205ENST00000412272 VPS18Q9P253 973 aa5.92□□□□□ -1.46
HERC4-205ENST00000412272 RGS12O14924 1447 aa5.92□□□□□ -1.46
HERC4-205ENST00000412272 USP27XA6NNY8 438 aa5.92□□□□□ -1.46
HERC4-205ENST00000412272 APAF1O14727 1248 aa5.92□□□□□ -1.46
HERC4-205ENST00000412272 CCDC158Q5M9N0 1113 aa5.92□□□□□ -1.46
HERC4-205ENST00000412272 KANK3Q6NY19 840 aa5.92□□□□□ -1.46
HERC4-205ENST00000412272 DTNBP1Q96EV8 351 aa5.92□□□□□ -1.46
HERC4-205ENST00000412272 ZNF518AQ6AHZ1 1483 aa5.92□□□□□ -1.46
HERC4-205ENST00000412272 DYTNA2CJ06 578 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 LSM1O15116 133 aaKnown RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 WDHD1O75717 1129 aaPredicted RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 RASSF9O75901 435 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 CHGAP10645 457 aaKnown RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 YY1P25490 414 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 SHROOM1Q2M3G4 852 aaPredicted RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 PARP10Q53GL7 1025 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 SH3GL1Q99961 368 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 RBM42Q9BTD8 480 aaKnown RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 MUC3BQ9H195 1237 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 ZWILCHQ9H900 591 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 SLC30A1Q9Y6M5 507 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 B4DLN1 442 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 PARNO95453 639 aaKnown RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 PARP1P09874 1014 aaKnown RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 GNAT1P11488 350 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 TRIM21P19474 475 aaKnown RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 INPP5BP32019 993 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 EIF2B5Q13144 721 aaKnown RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 ALDH1L2Q3SY69 923 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 NANOGNBQ7Z5D8 188 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 FAM76AQ8TAV0 307 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 KLC4Q9NSK0 619 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 CAPN7Q9Y6W3 813 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 SYT1P21579 422 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 CUL3Q13618 768 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 EIF4A2Q14240 407 aaKnown RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 PPP2R5BQ15173 497 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 COBLL1Q53SF7 1204 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 UBE2Q1Q7Z7E8 422 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.91□□□□□ -1.46
HERC4-205ENST00000412272 FAM200AQ8TCP9 573 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 ACSBG1Q96GR2 724 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 RUFY1Q96T51 708 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 MAK16Q9BXY0 300 aaKnown RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 CDC42BPGQ6DT37 1551 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 SPTLC2O15270 562 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 CEP104O60308 925 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 TCF7P36402 384 aaPredicted RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 CSE1LP55060 971 aaKnown RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 OXCT1P55809 520 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 NCCRP1Q6ZVX7 275 aaPredicted RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 SPATS2Q86XZ4 545 aaKnown RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 CCDC170Q8IYT3 715 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 INO80BQ9C086 356 aaPredicted RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 BICC1Q9H694 974 aaKnown RBP5.91□□□□□ -1.46
HERC4-205ENST00000412272 PCDH18Q9HCL0 1135 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 HELLSQ9NRZ9 838 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 FAM135BQ49AJ0 1406 aa5.91□□□□□ -1.46
HERC4-205ENST00000412272 PHLPP2Q6ZVD8 1323 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 FANCD2Q9BXW9 1451 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 A6NHS1 94 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 MTRF1O75570 445 aaKnown RBP5.9□□□□□ -1.46
HERC4-205ENST00000412272 SCG2P13521 617 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 GNAQP50148 359 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 C4orf46Q504U0 113 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 CREB3L3Q68CJ9 461 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 CCBE1Q6UXH8 406 aaPredicted RBP5.9□□□□□ -1.46
HERC4-205ENST00000412272 WAPLQ7Z5K2 1190 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 DZIP1Q86YF9 867 aaKnown RBP5.9□□□□□ -1.46
HERC4-205ENST00000412272 PCMTD2Q9NV79 361 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 CHIC2Q9UKJ5 165 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 WDR33Q9C0J8 1336 aaKnown RBP5.9□□□□□ -1.46
HERC4-205ENST00000412272 RAPGEF6Q8TEU7 1601 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 PSDA5PKW4 1024 aaPredicted RBP5.9□□□□□ -1.46
HERC4-205ENST00000412272 SART1O43290 800 aaKnown RBP5.9□□□□□ -1.46
HERC4-205ENST00000412272 PPP1R12BO60237 982 aaPredicted RBP5.9□□□□□ -1.46
HERC4-205ENST00000412272 PDGFRBP09619 1106 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 MSL3P1P0C860 447 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 HCLS1P14317 486 aaPredicted RBP5.9□□□□□ -1.46
HERC4-205ENST00000412272 ZNF75DP51815 510 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 DMPKQ09013 629 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 CAMK2BQ13554 666 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 PKD2Q13563 968 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 ARHGEF6Q15052 776 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 SPDYCQ5MJ68 293 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 CEP85LQ5SZL2 805 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 BICDL1Q6ZP65 573 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 LRRC49Q8IUZ0 686 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 ZGPATQ8N5A5 531 aaKnown RBP5.9□□□□□ -1.46
HERC4-205ENST00000412272 ZBTB8BQ8NAP8 495 aaPredicted RBP5.9□□□□□ -1.46
HERC4-205ENST00000412272 CTNNBL1Q8WYA6 563 aaPredicted RBP5.9□□□□□ -1.46
HERC4-205ENST00000412272 HOOK2Q96ED9 719 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 CHAMP1Q96JM3 812 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 TANGO6Q9C0B7 1094 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 MYO1AQ9UBC5 1043 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 ANKRD26Q9UPS8 1709 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 GMEB1Q9Y692 573 aa5.9□□□□□ -1.46
HERC4-205ENST00000412272 CRYBG1Q9Y4K1 1723 aa5.9□□□□□ -1.47
HERC4-205ENST00000412272 ASXL2Q76L83 1435 aa5.9□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms