RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 MCM5P33992 734 aa31.72■■■□□ 2.67
MSX1-201ENST00000382723 RBM5P52756 815 aaKnown RBP eCLIP31.72■■■□□ 2.67
MSX1-201ENST00000382723 NKX2-3Q8TAU0 364 aa31.72■■■□□ 2.67
MSX1-201ENST00000382723 STAG1Q8WVM7 1258 aa31.72■■■□□ 2.67
MSX1-201ENST00000382723 TOMM22Q9NS69 142 aa31.72■■■□□ 2.67
MSX1-201ENST00000382723 ARPP21Q9UBL0 812 aaPredicted RBP31.72■■■□□ 2.67
MSX1-201ENST00000382723 MKRN1Q9UHC7 482 aaKnown RBP31.72■■■□□ 2.67
MSX1-201ENST00000382723 ANAPC4Q9UJX5 808 aa31.72■■■□□ 2.67
MSX1-201ENST00000382723 VIL1P09327 827 aaKnown RBP31.71■■■□□ 2.67
MSX1-201ENST00000382723 EVX2Q03828 476 aa31.71■■■□□ 2.67
MSX1-201ENST00000382723 TPCN1Q9ULQ1 816 aa31.71■■■□□ 2.67
MSX1-201ENST00000382723 LTBP3Q9NS15 1303 aa31.71■■■□□ 2.67
MSX1-201ENST00000382723 PRC1O43663 620 aa31.71■■■□□ 2.67
MSX1-201ENST00000382723 LARGE1O95461 756 aa31.71■■■□□ 2.67
MSX1-201ENST00000382723 RRP12Q5JTH9 1297 aaKnown RBP31.71■■■□□ 2.67
MSX1-201ENST00000382723 SYT17Q9BSW7 474 aa31.71■■■□□ 2.67
MSX1-201ENST00000382723 PCDHAC2Q9Y5I4 1007 aa31.71■■■□□ 2.67
MSX1-201ENST00000382723 APOBEC3HQ6NTF7 200 aaKnown RBP31.7■■■□□ 2.67
MSX1-201ENST00000382723 RNF41Q9H4P4 317 aaPredicted RBP31.7■■■□□ 2.67
MSX1-201ENST00000382723 USP40Q9NVE5 1235 aa31.7■■■□□ 2.67
MSX1-201ENST00000382723 ANTXR2P58335 489 aa31.69■■■□□ 2.66
MSX1-201ENST00000382723 BRF1Q92994 677 aa31.69■■■□□ 2.66
MSX1-201ENST00000382723 MRIQ9BWK5 157 aa31.69■■■□□ 2.66
MSX1-201ENST00000382723 CNNM2Q9H8M5 875 aa31.69■■■□□ 2.66
MSX1-201ENST00000382723 SAP30BPQ9UHR5 308 aaKnown RBP31.69■■■□□ 2.66
MSX1-201ENST00000382723 ZBTB12Q9Y330 459 aaPredicted RBP31.69■■■□□ 2.66
MSX1-201ENST00000382723 BAZ2AQ9UIF9 1905 aaKnown RBP31.69■■■□□ 2.66
MSX1-201ENST00000382723 MYO3BQ8WXR4 1341 aa31.69■■■□□ 2.66
MSX1-201ENST00000382723 HDLBPQ00341 1268 aaKnown RBP31.69■■■□□ 2.66
MSX1-201ENST00000382723 SBK1Q52WX2 424 aa31.69■■■□□ 2.66
MSX1-201ENST00000382723 CYB5R4Q7L1T6 521 aa31.69■■■□□ 2.66
MSX1-201ENST00000382723 ZDHHC15Q96MV8 337 aa31.69■■■□□ 2.66
MSX1-201ENST00000382723 ADAMTSL1Q8N6G6 1762 aa31.69■■■□□ 2.66
MSX1-201ENST00000382723 TIAM2Q8IVF5 1701 aa31.68■■■□□ 2.66
MSX1-201ENST00000382723 PRELPP51888 382 aa31.68■■■□□ 2.66
MSX1-201ENST00000382723 CXCL9Q07325 125 aa31.68■■■□□ 2.66
MSX1-201ENST00000382723 ZSCAN31Q96LW9 406 aaPredicted RBP31.68■■■□□ 2.66
MSX1-201ENST00000382723 KRT23Q9C075 422 aa31.68■■■□□ 2.66
MSX1-201ENST00000382723 SERPINA10Q9UK55 444 aa31.68■■■□□ 2.66
MSX1-201ENST00000382723 FLT1P17948 1338 aa31.68■■■□□ 2.66
MSX1-201ENST00000382723 CUL4AQ13619 759 aa31.67■■■□□ 2.66
MSX1-201ENST00000382723 ME3Q16798 604 aa31.67■■■□□ 2.66
MSX1-201ENST00000382723 KDM4AO75164 1064 aa31.67■■■□□ 2.66
MSX1-201ENST00000382723 PICALMQ13492 652 aa31.67■■■□□ 2.66
MSX1-201ENST00000382723 CDC42EP5Q6NZY7 148 aa31.67■■■□□ 2.66
MSX1-201ENST00000382723 ARHGAP27Q6ZUM4 889 aa31.67■■■□□ 2.66
MSX1-201ENST00000382723 AMOTL1Q8IY63 956 aa31.66■■■□□ 2.66
MSX1-201ENST00000382723 GPHNQ9NQX3 736 aaPredicted RBP31.66■■■□□ 2.66
MSX1-201ENST00000382723 ARFGEF1Q9Y6D6 1849 aa31.66■■■□□ 2.66
MSX1-201ENST00000382723 CIAPIN1Q6FI81 312 aa31.65■■■□□ 2.66
MSX1-201ENST00000382723 SH2B1Q9NRF2 756 aaPredicted RBP31.65■■■□□ 2.66
MSX1-201ENST00000382723 POLR3DP05423 398 aaPredicted RBP31.65■■■□□ 2.66
MSX1-201ENST00000382723 C12orf60Q5U649 245 aa31.65■■■□□ 2.66
MSX1-201ENST00000382723 GMLQ99445 158 aa31.65■■■□□ 2.66
MSX1-201ENST00000382723 ZSWIM5Q9P217 1185 aa31.65■■■□□ 2.66
MSX1-201ENST00000382723 PRDM1O75626 825 aa31.64■■■□□ 2.66
MSX1-201ENST00000382723 SLC3A2P08195 630 aaKnown RBP31.64■■■□□ 2.66
MSX1-201ENST00000382723 APOBRQ0VD83 1088 aa31.64■■■□□ 2.66
MSX1-201ENST00000382723 NECAB1Q8N987 351 aa31.64■■■□□ 2.66
MSX1-201ENST00000382723 AGXT2Q9BYV1 514 aa31.64■■■□□ 2.66
MSX1-201ENST00000382723 WDHD1O75717 1129 aaPredicted RBP31.63■■■□□ 2.65
MSX1-201ENST00000382723 STK3Q13188 491 aa31.63■■■□□ 2.65
MSX1-201ENST00000382723 CFAP100Q494V2 611 aa31.63■■■□□ 2.65
MSX1-201ENST00000382723 CCDC83Q8IWF9 413 aa31.63■■■□□ 2.65
MSX1-201ENST00000382723 PSME4Q14997 1843 aa31.63■■■□□ 2.65
MSX1-201ENST00000382723 WDR19Q8NEZ3 1342 aa31.63■■■□□ 2.65
MSX1-201ENST00000382723 DDX4Q9NQI0 724 aaKnown RBP31.62■■■□□ 2.65
MSX1-201ENST00000382723 NAP1L2Q9ULW6 460 aaPredicted RBP31.62■■■□□ 2.65
MSX1-201ENST00000382723 PLCD1P51178 756 aa31.61■■■□□ 2.65
MSX1-201ENST00000382723 OGFOD1Q8N543 542 aa31.61■■■□□ 2.65
MSX1-201ENST00000382723 HDAC9Q9UKV0 1011 aa31.61■■■□□ 2.65
MSX1-201ENST00000382723 TNIP1Q15025 636 aa31.61■■■□□ 2.65
MSX1-201ENST00000382723 AGBL3Q8NEM8 1001 aa31.61■■■□□ 2.65
MSX1-201ENST00000382723 ESR2Q92731 530 aa31.61■■■□□ 2.65
MSX1-201ENST00000382723 DYNLL2Q96FJ2 89 aa31.61■■■□□ 2.65
MSX1-201ENST00000382723 NAV1Q8NEY1 1877 aa31.6■■■□□ 2.65
MSX1-201ENST00000382723 DDIT3P35638 169 aa31.6■■■□□ 2.65
MSX1-201ENST00000382723 CACNB3P54284 484 aa31.6■■■□□ 2.65
MSX1-201ENST00000382723 FBXL16Q8N461 479 aa31.6■■■□□ 2.65
MSX1-201ENST00000382723 INTS4Q96HW7 963 aaKnown RBP31.6■■■□□ 2.65
MSX1-201ENST00000382723 RANBP6O60518 1105 aaKnown RBP31.59■■■□□ 2.65
MSX1-201ENST00000382723 PDE4BQ07343 736 aa31.59■■■□□ 2.65
MSX1-201ENST00000382723 ZKSCAN3Q9BRR0 538 aa31.59■■■□□ 2.65
MSX1-201ENST00000382723 DDX52Q9Y2R4 599 aaKnown RBP eCLIP31.59■■■□□ 2.65
MSX1-201ENST00000382723 FGRP09769 529 aa31.59■■■□□ 2.65
MSX1-201ENST00000382723 PCP11498 1178 aaKnown RBP31.59■■■□□ 2.65
MSX1-201ENST00000382723 ST3GAL1Q11201 340 aa31.59■■■□□ 2.65
MSX1-201ENST00000382723 NFIAQ12857 509 aa31.59■■■□□ 2.65
MSX1-201ENST00000382723 LAMB1P07942 1786 aa31.59■■■□□ 2.65
MSX1-201ENST00000382723 CDK5RAP2Q96SN8 1893 aa31.58■■■□□ 2.65
MSX1-201ENST00000382723 TMEM87BQ96K49 555 aa31.58■■■□□ 2.65
MSX1-201ENST00000382723 PRMT6Q96LA8 375 aaPredicted RBP31.58■■■□□ 2.65
MSX1-201ENST00000382723 TDRD3Q9H7E2 651 aaKnown RBP31.58■■■□□ 2.65
MSX1-201ENST00000382723 SH2B2O14492 632 aaPredicted RBP31.57■■■□□ 2.64
MSX1-201ENST00000382723 IFIT3O14879 490 aaKnown RBP31.57■■■□□ 2.64
MSX1-201ENST00000382723 EIF6P56537 245 aaKnown RBP31.57■■■□□ 2.64
MSX1-201ENST00000382723 TMEM67Q5HYA8 995 aa31.57■■■□□ 2.64
MSX1-201ENST00000382723 CHMP5Q9NZZ3 219 aa31.57■■■□□ 2.64
MSX1-201ENST00000382723 ANGEL1Q9UNK9 670 aaKnown RBP31.57■■■□□ 2.64
MSX1-201ENST00000382723 CWC22Q9HCG8 908 aaKnown RBP31.57■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms