RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 DICER1Q9UPY3 1922 aaKnown RBP4.74□□□□□ -1.65
MCF2-203ENST00000370576 GNAT3A8MTJ3 354 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 SMAPO00193 183 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 TCERG1O14776 1098 aaKnown RBP4.74□□□□□ -1.65
MCF2-203ENST00000370576 ARID5AQ03989 594 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 ATF7IPQ6VMQ6 1270 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 TMC7Q7Z402 723 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 PARP2Q9UGN5 583 aa4.74□□□□□ -1.65
MCF2-203ENST00000370576 SIPA1L1O43166 1804 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 C21orf2O43822 256 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 RPN1P04843 607 aaKnown RBP4.73□□□□□ -1.65
MCF2-203ENST00000370576 TRIM27P14373 513 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 ZNF76P36508 570 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 ST13P50502 369 aaKnown RBP4.73□□□□□ -1.65
MCF2-203ENST00000370576 IFT88Q13099 833 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 GALEQ14376 348 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 RRS1Q15050 365 aaKnown RBP4.73□□□□□ -1.65
MCF2-203ENST00000370576 C20orf194Q5TEA3 1177 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 NBPF5PQ86XG9 351 aaPredicted RBP4.73□□□□□ -1.65
MCF2-203ENST00000370576 SIRT2Q8IXJ6 389 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 SSH1Q8WYL5 1049 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 ZBTB12Q9Y330 459 aaPredicted RBP4.73□□□□□ -1.65
MCF2-203ENST00000370576 C10orf71Q711Q0 1435 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 ABCC12Q96J65 1359 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 PIK3CDO00329 1044 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 MSH5O43196 834 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 FOSP01100 380 aaPredicted RBP4.73□□□□□ -1.65
MCF2-203ENST00000370576 SERPINB3P29508 390 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 EPHB1P54762 984 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 RIPK4P57078 832 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 ZBED6P86452 979 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 SWI5Q1ZZU3 235 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 GLIPR1L2Q4G1C9 344 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 SUGP1Q8IWZ8 645 aaKnown RBP4.73□□□□□ -1.65
MCF2-203ENST00000370576 AS3MTQ9HBK9 375 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 FAM221BA6H8Z2 402 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 HSP90AA1P07900 732 aaKnown RBP4.73□□□□□ -1.65
MCF2-203ENST00000370576 NAT2P11245 290 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 KRT83P78385 493 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 SLFNL1Q499Z3 407 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 C10orf62Q5T681 223 aaPredicted RBP4.73□□□□□ -1.65
MCF2-203ENST00000370576 C1orf122Q6ZSJ8 110 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 C8orf58Q8NAV2 365 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 TTC13Q8NBP0 860 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 E2F7Q96AV8 911 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 PLA2G12BQ9BX93 195 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 CXorf56Q9H5V9 222 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 KMT5AQ9NQR1 393 aa4.73□□□□□ -1.65
MCF2-203ENST00000370576 GLULP15104 373 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 SQSTM1Q13501 440 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 RABL6Q3YEC7 729 aaPredicted RBP4.72□□□□□ -1.65
MCF2-203ENST00000370576 CATIPQ7Z7H3 387 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 THNSL2Q86YJ6 484 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 TMEM87AQ8NBN3 555 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 TTC8Q8TAM2 541 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 ANKRD24Q8TF21 1146 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 SAGE1Q9NXZ1 904 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 SNTG2Q9NY99 539 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 RAI14Q9P0K7 980 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 TMEM63CQ9P1W3 806 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 PCDH11XQ9BZA7 1347 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 PCDH11YQ9BZA8 1340 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 BTF3P20290 206 aaKnown RBP4.72□□□□□ -1.65
MCF2-203ENST00000370576 ATP2B4P23634 1241 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 TRIM28Q13263 835 aaKnown RBP4.72□□□□□ -1.65
MCF2-203ENST00000370576 C14orf80Q86SX3 495 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 GIMAP1Q8WWP7 306 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 PGBD4Q96DM1 585 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 CAMKK2Q96RR4 588 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 MYCBPQ99417 103 aaPredicted RBP4.72□□□□□ -1.65
MCF2-203ENST00000370576 SLC52A2Q9HAB3 445 aa4.72□□□□□ -1.65
MCF2-203ENST00000370576 C9IYK1 514 aa4.71□□□□□ -1.65
MCF2-203ENST00000370576 CYP27B1O15528 508 aa4.71□□□□□ -1.65
MCF2-203ENST00000370576 PIP5K1CO60331 668 aa4.71□□□□□ -1.65
MCF2-203ENST00000370576 DDIT3P35638 169 aa4.71□□□□□ -1.65
MCF2-203ENST00000370576 SARSP49591 514 aaKnown RBP4.71□□□□□ -1.65
MCF2-203ENST00000370576 TAF7Q15545 349 aaPredicted RBP4.71□□□□□ -1.65
MCF2-203ENST00000370576 ZRSR2Q15696 482 aaKnown RBP4.71□□□□□ -1.65
MCF2-203ENST00000370576 ZNF394Q53GI3 561 aa4.71□□□□□ -1.65
MCF2-203ENST00000370576 WDR45BQ5MNZ6 344 aa4.71□□□□□ -1.65
MCF2-203ENST00000370576 FAM161BQ96MY7 647 aa4.71□□□□□ -1.65
MCF2-203ENST00000370576 STAP2Q9UGK3 403 aa4.71□□□□□ -1.65
MCF2-203ENST00000370576 FER1L6Q2WGJ9 1857 aa4.71□□□□□ -1.65
MCF2-203ENST00000370576 MOXD2PA6NHM9 499 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 RASA1P20936 1047 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 TRPC1P48995 793 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 NUCB1Q02818 461 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 EXOSC9Q06265 439 aaKnown RBP4.71□□□□□ -1.66
MCF2-203ENST00000370576 WASHC5Q12768 1159 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 C8orf34Q49A92 452 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 CDCA2Q69YH5 1023 aaPredicted RBP4.71□□□□□ -1.66
MCF2-203ENST00000370576 PDILTQ8N807 584 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 KIF12Q96FN5 646 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 DCAF5Q96JK2 942 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 CDHR1Q96JP9 859 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 OSBPL5Q9H0X9 879 aaPredicted RBP4.71□□□□□ -1.66
MCF2-203ENST00000370576 CCSER2Q9H7U1 834 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 HOMER2Q9NSB8 354 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 GTF2IRD1Q9UHL9 959 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 A0A1W2PRQ8 180 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms