RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 DHX40Q8IX18 779 aaKnown RBP24.16■■□□□ 1.46
CCDC88B-203ENST00000359902 UBE2Q2LH0YL09 131 aa24.16■■□□□ 1.46
CCDC88B-203ENST00000359902 U2AF2P26368 475 aaKnown RBP eCLIP24.16■■□□□ 1.46
CCDC88B-203ENST00000359902 FAM98CQ17RN3 349 aaKnown RBP24.16■■□□□ 1.46
CCDC88B-203ENST00000359902 GLIPR1L2Q4G1C9 344 aa24.16■■□□□ 1.46
CCDC88B-203ENST00000359902 GNL3LQ9NVN8 582 aaKnown RBP24.16■■□□□ 1.46
CCDC88B-203ENST00000359902 ABCF2Q9UG63 623 aa24.16■■□□□ 1.46
CCDC88B-203ENST00000359902 STK36Q9NRP7 1315 aa24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 UQCRHLA0A096LP55 91 aa24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 UQCRHP07919 91 aa24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 SSRP1Q08945 709 aaKnown RBP24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 ZKSCAN3Q9BRR0 538 aa24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 SLC26A6Q9BXS9 759 aa24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 TOMM22Q9NS69 142 aa24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 KIAA1468Q9P260 1216 aa24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 NID2Q14112 1375 aa24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 ZNF202O95125 648 aa24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 FMNL1O95466 1100 aaPredicted RBP24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 IFNAR1P17181 557 aa24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 CDC25BP30305 580 aa24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 MINPP1Q9UNW1 487 aa24.15■■□□□ 1.46
CCDC88B-203ENST00000359902 MARCKSP29966 332 aaPredicted RBP24.14■■□□□ 1.45
CCDC88B-203ENST00000359902 TRIM29Q14134 588 aa24.14■■□□□ 1.45
CCDC88B-203ENST00000359902 TAOK2Q9UL54 1235 aa24.14■■□□□ 1.45
CCDC88B-203ENST00000359902 ZNF831Q5JPB2 1677 aa24.14■■□□□ 1.45
CCDC88B-203ENST00000359902 ECM29Q5VYK3 1845 aa24.14■■□□□ 1.45
CCDC88B-203ENST00000359902 BECN2A8MW95 431 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 PPARAQ07869 468 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 GNL2Q13823 731 aaKnown RBP24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 WTAPQ15007 396 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 SART3Q15020 963 aaKnown RBP24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 CEP57L1Q8IYX8 460 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 STK11IPQ8N1F8 1099 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 MAP3K14Q99558 947 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 MTA3Q9BTC8 594 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 RAI14Q9P0K7 980 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 CLIP2Q9UDT6 1046 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 TAF1P21675 1872 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 MAGEB6P1A0A0J9YX57 407 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 PFKFB1P16118 471 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 PTPAQ15257 358 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 SLC10A5Q5PT55 438 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 BICDL1Q6ZP65 573 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 SMIM5Q71RC9 77 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 SDR42E1Q8WUS8 393 aa24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 RNF41Q9H4P4 317 aaPredicted RBP24.13■■□□□ 1.45
CCDC88B-203ENST00000359902 TBC1D9BQ66K14 1250 aa24.12■■□□□ 1.45
CCDC88B-203ENST00000359902 BCL2L12Q9HB09 334 aa24.12■■□□□ 1.45
CCDC88B-203ENST00000359902 COL1A1P02452 1464 aaPredicted RBP24.12■■□□□ 1.45
CCDC88B-203ENST00000359902 PPP6R2O75170 966 aa24.12■■□□□ 1.45
CCDC88B-203ENST00000359902 TMTC2Q8N394 836 aa24.12■■□□□ 1.45
CCDC88B-203ENST00000359902 NAT10Q9H0A0 1025 aaKnown RBP24.12■■□□□ 1.45
CCDC88B-203ENST00000359902 MROH7-TTC4A0A0A0MT08 1334 aa24.12■■□□□ 1.45
CCDC88B-203ENST00000359902 CNTNAP4Q9C0A0 1308 aa24.12■■□□□ 1.45
CCDC88B-203ENST00000359902 CAVIN4Q5BKX8 364 aa24.11■■□□□ 1.45
CCDC88B-203ENST00000359902 CELF1Q92879 486 aaKnown RBP24.11■■□□□ 1.45
CCDC88B-203ENST00000359902 MRFAP1L1Q96HT8 127 aa24.11■■□□□ 1.45
CCDC88B-203ENST00000359902 FAM84BQ96KN1 310 aaPredicted RBP24.11■■□□□ 1.45
CCDC88B-203ENST00000359902 RIOK1Q9BRS2 568 aaKnown RBP24.11■■□□□ 1.45
CCDC88B-203ENST00000359902 ANAPC4Q9UJX5 808 aa24.11■■□□□ 1.45
CCDC88B-203ENST00000359902 A0A1B0GUL6 1792 aa24.11■■□□□ 1.45
CCDC88B-203ENST00000359902 ERICH2A1L162 156 aa24.11■■□□□ 1.45
CCDC88B-203ENST00000359902 GUCY1A2P33402 732 aa24.11■■□□□ 1.45
CCDC88B-203ENST00000359902 PIP4K2BP78356 416 aa24.11■■□□□ 1.45
CCDC88B-203ENST00000359902 LRMPQ12912 555 aa24.11■■□□□ 1.45
CCDC88B-203ENST00000359902 RTN1Q16799 776 aa24.11■■□□□ 1.45
CCDC88B-203ENST00000359902 WASF1Q92558 559 aa24.11■■□□□ 1.45
CCDC88B-203ENST00000359902 RGL2O15211 777 aa24.1■■□□□ 1.45
CCDC88B-203ENST00000359902 SLC3A2P08195 630 aaKnown RBP24.1■■□□□ 1.45
CCDC88B-203ENST00000359902 GTF2E1P29083 439 aaPredicted RBP24.1■■□□□ 1.45
CCDC88B-203ENST00000359902 PTF1AQ7RTS3 328 aa24.1■■□□□ 1.45
CCDC88B-203ENST00000359902 FBXW7Q969H0 707 aa24.1■■□□□ 1.45
CCDC88B-203ENST00000359902 MINDY4BA8MYZ0 360 aa24.1■■□□□ 1.45
CCDC88B-203ENST00000359902 CCDC144BQ3MJ40 725 aa24.1■■□□□ 1.45
CCDC88B-203ENST00000359902 AOPEPQ8N6M6 819 aa24.1■■□□□ 1.45
CCDC88B-203ENST00000359902 JMYQ8N9B5 988 aa24.1■■□□□ 1.45
CCDC88B-203ENST00000359902 NBPF11Q86T75 865 aa24.09■■□□□ 1.45
CCDC88B-203ENST00000359902 HPSEQ9Y251 543 aa24.09■■□□□ 1.45
CCDC88B-203ENST00000359902 DPCR1Q3MIW9 517 aa24.09■■□□□ 1.45
CCDC88B-203ENST00000359902 SHC4Q6S5L8 630 aa24.09■■□□□ 1.45
CCDC88B-203ENST00000359902 TIGD1Q96MW7 591 aa24.09■■□□□ 1.45
CCDC88B-203ENST00000359902 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.09■■□□□ 1.45
CCDC88B-203ENST00000359902 SMIM22K7EJ46 135 aa24.08■■□□□ 1.45
CCDC88B-203ENST00000359902 RCAN1P53805 252 aa24.08■■□□□ 1.45
CCDC88B-203ENST00000359902 RBM6P78332 1123 aaKnown RBP24.08■■□□□ 1.45
CCDC88B-203ENST00000359902 CRACR2BQ8N4Y2 399 aaPredicted RBP24.08■■□□□ 1.45
CCDC88B-203ENST00000359902 ZNF384Q8TF68 577 aa24.08■■□□□ 1.45
CCDC88B-203ENST00000359902 PRIMPOLQ96LW4 560 aa24.08■■□□□ 1.45
CCDC88B-203ENST00000359902 CACNA1SQ13698 1873 aa24.08■■□□□ 1.45
CCDC88B-203ENST00000359902 CASZ1Q86V15 1759 aa24.08■■□□□ 1.44
CCDC88B-203ENST00000359902 FBXO33Q7Z6M2 555 aa24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 TRIM22Q8IYM9 498 aa24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 ZNF654Q8IZM8 581 aa24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 FANCBQ8NB91 859 aa24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 BPIFA3Q9BQP9 254 aa24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 FAM237AA0A1B0GTK4 181 aa24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 CCDC196A0A1B0GTZ2 297 aa24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 MMP1P03956 469 aa24.07■■□□□ 1.44
CCDC88B-203ENST00000359902 SYKP43405 635 aa24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms