RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 PIGBQ92521 554 aa25.7■■□□□ 1.7
TRIM28-202ENST00000341753 GPTP24298 496 aa25.7■■□□□ 1.7
TRIM28-202ENST00000341753 PTPAQ15257 358 aa25.7■■□□□ 1.7
TRIM28-202ENST00000341753 TTC39AQ5SRH9 613 aa25.7■■□□□ 1.7
TRIM28-202ENST00000341753 ARHGAP6O43182 974 aa25.69■■□□□ 1.7
TRIM28-202ENST00000341753 FBXL16Q8N461 479 aa25.69■■□□□ 1.7
TRIM28-202ENST00000341753 IRX2Q9BZI1 471 aaPredicted RBP25.69■■□□□ 1.7
TRIM28-202ENST00000341753 ZNF213O14771 459 aa25.69■■□□□ 1.7
TRIM28-202ENST00000341753 FAM193AP78312 1265 aa25.69■■□□□ 1.7
TRIM28-202ENST00000341753 SMC1AQ14683 1233 aaKnown RBP25.69■■□□□ 1.7
TRIM28-202ENST00000341753 CREBRFQ8IUR6 639 aa25.69■■□□□ 1.7
TRIM28-202ENST00000341753 PARP4Q9UKK3 1724 aaKnown RBP25.68■■□□□ 1.7
TRIM28-202ENST00000341753 MICU3Q86XE3 530 aa25.68■■□□□ 1.7
TRIM28-202ENST00000341753 MYL10Q9BUA6 226 aa25.68■■□□□ 1.7
TRIM28-202ENST00000341753 BTG4Q9NY30 223 aa25.68■■□□□ 1.7
TRIM28-202ENST00000341753 ZAP70P43403 619 aa25.68■■□□□ 1.7
TRIM28-202ENST00000341753 DHX58Q96C10 678 aa25.68■■□□□ 1.7
TRIM28-202ENST00000341753 PARD6BQ9BYG5 372 aa25.68■■□□□ 1.7
TRIM28-202ENST00000341753 MAP3K9P80192 1104 aa25.67■■□□□ 1.7
TRIM28-202ENST00000341753 MTF1Q14872 753 aa25.67■■□□□ 1.7
TRIM28-202ENST00000341753 GPR108Q9NPR9 543 aa25.67■■□□□ 1.7
TRIM28-202ENST00000341753 NWD2Q9ULI1 1742 aa25.67■■□□□ 1.7
TRIM28-202ENST00000341753 METAP2P50579 478 aaKnown RBP eCLIP25.67■■□□□ 1.73e-8■■□□□ 12.9
TRIM28-202ENST00000341753 KCNH3Q9ULD8 1083 aa25.67■■□□□ 1.7
TRIM28-202ENST00000341753 TJP1Q07157 1748 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 TULP2O00295 520 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 FMR1Q06787 632 aaKnown RBP eCLIP25.66■■□□□ 1.71e-10■■■□□ 18.1
TRIM28-202ENST00000341753 RESP18Q5W5W9 173 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 CYB5R4Q7L1T6 521 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 MPHOSPH8Q99549 860 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 MAP3K14Q99558 947 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 MRFAP1Q9Y605 127 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 GPAA1O43292 621 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 RAD51AP2Q09MP3 1159 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 CCDC102BQ68D86 513 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 KRBA2Q6ZNG9 492 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 TC2NQ8N9U0 490 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 XAGE2Q96GT9 111 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 CEP126Q9P2H0 1117 aa25.66■■□□□ 1.7
TRIM28-202ENST00000341753 HLFQ16534 295 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 GRAMD1CQ8IYS0 662 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 NBPF3Q9H094 633 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 GRIN1Q05586 938 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 TCIRG1Q13488 830 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 NUP188Q5SRE5 1749 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 A0A0U1RQJ8 604 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 TPM1P09493 284 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 PRR29P0C7W0 189 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 CCDC57Q2TAC2 916 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 GPR161Q8N6U8 529 aaKnown RBP25.65■■□□□ 1.7
TRIM28-202ENST00000341753 JMYQ8N9B5 988 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 ATRIPQ8WXE1 791 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 ISCA1Q9BUE6 129 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 UBXN6Q9BZV1 441 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 ARFGAP3Q9NP61 516 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 NFE2L3Q9Y4A8 694 aa25.65■■□□□ 1.7
TRIM28-202ENST00000341753 PPP6R2O75170 966 aa25.64■■□□□ 1.7
TRIM28-202ENST00000341753 FCHSD1Q86WN1 690 aa25.64■■□□□ 1.7
TRIM28-202ENST00000341753 TBC1D10CQ8IV04 446 aa25.64■■□□□ 1.7
TRIM28-202ENST00000341753 KIFC2Q96AC6 838 aa25.64■■□□□ 1.7
TRIM28-202ENST00000341753 INCENPQ9NQS7 918 aa25.64■■□□□ 1.7
TRIM28-202ENST00000341753 ATG3Q9NT62 314 aa25.64■■□□□ 1.7
TRIM28-202ENST00000341753 UBR2Q8IWV8 1755 aa25.64■■□□□ 1.7
TRIM28-202ENST00000341753 CCDC12Q8WUD4 166 aaPredicted RBP25.64■■□□□ 1.69
TRIM28-202ENST00000341753 MRPL44Q9H9J2 332 aaKnown RBP25.64■■□□□ 1.69
TRIM28-202ENST00000341753 ZMYM6O95789 1325 aa25.63■■□□□ 1.69
TRIM28-202ENST00000341753 TBX2Q13207 712 aaPredicted RBP25.63■■□□□ 1.69
TRIM28-202ENST00000341753 SHANK3Q9BYB0 1731 aa25.63■■□□□ 1.69
TRIM28-202ENST00000341753 RSRC2Q7L4I2 434 aaKnown RBP25.63■■□□□ 1.69
TRIM28-202ENST00000341753 LZTFL1Q9NQ48 299 aa25.63■■□□□ 1.69
TRIM28-202ENST00000341753 APPP05067 770 aa25.62■■□□□ 1.69
TRIM28-202ENST00000341753 APPBP2Q92624 585 aa25.62■■□□□ 1.69
TRIM28-202ENST00000341753 MAN1B1Q9UKM7 699 aa25.62■■□□□ 1.69
TRIM28-202ENST00000341753 ANGEL1Q9UNK9 670 aaKnown RBP25.62■■□□□ 1.69
TRIM28-202ENST00000341753 TNS2Q63HR2 1409 aa25.62■■□□□ 1.69
TRIM28-202ENST00000341753 PLEKHG2Q9H7P9 1386 aa25.62■■□□□ 1.69
TRIM28-202ENST00000341753 A0A0G2JS52 829 aa25.62■■□□□ 1.69
TRIM28-202ENST00000341753 TRDNQ13061 729 aa25.62■■□□□ 1.69
TRIM28-202ENST00000341753 FUT8Q9BYC5 575 aa25.62■■□□□ 1.69
TRIM28-202ENST00000341753 SAMSN1Q9NSI8 373 aaKnown RBP25.62■■□□□ 1.69
TRIM28-202ENST00000341753 TOGARAM1Q9Y4F4 1720 aa25.62■■□□□ 1.69
TRIM28-202ENST00000341753 B4E1Z4 1266 aa25.61■■□□□ 1.69
TRIM28-202ENST00000341753 SPECC1LQ69YQ0 1117 aa25.61■■□□□ 1.69
TRIM28-202ENST00000341753 ZFP91Q96JP5 570 aaPredicted RBP25.61■■□□□ 1.69
TRIM28-202ENST00000341753 SLC4A9Q96Q91 983 aa25.61■■□□□ 1.69
TRIM28-202ENST00000341753 PUF60Q9UHX1 559 aaKnown RBP25.61■■□□□ 1.69
TRIM28-202ENST00000341753 TAF7LQ5H9L4 462 aa25.61■■□□□ 1.69
TRIM28-202ENST00000341753 TXLNBQ8N3L3 684 aa25.61■■□□□ 1.69
TRIM28-202ENST00000341753 SOWAHDA6NJG2 315 aa25.6■■□□□ 1.69
TRIM28-202ENST00000341753 H3BQF6 201 aa25.6■■□□□ 1.69
TRIM28-202ENST00000341753 RANBP6O60518 1105 aaKnown RBP25.6■■□□□ 1.69
TRIM28-202ENST00000341753 NFXL1Q6ZNB6 911 aa25.6■■□□□ 1.69
TRIM28-202ENST00000341753 STX10O60499 249 aa25.6■■□□□ 1.69
TRIM28-202ENST00000341753 APOA5Q6Q788 366 aa25.6■■□□□ 1.69
TRIM28-202ENST00000341753 CPLX3Q8WVH0 158 aa25.6■■□□□ 1.69
TRIM28-202ENST00000341753 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.6■■□□□ 1.69
TRIM28-202ENST00000341753 CUTAO60888 179 aa25.59■■□□□ 1.69
TRIM28-202ENST00000341753 KIF6Q6ZMV9 814 aa25.59■■□□□ 1.69
TRIM28-202ENST00000341753 GOLGA1Q92805 767 aa25.59■■□□□ 1.69
TRIM28-202ENST00000341753 STRCQ7RTU9 1775 aa25.59■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms