RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 FAM43AQ8N2R8 423 aa21.81■■□□□ 1.08
HDDC3-201ENST00000330334 ATRNL1Q5VV63 1379 aa21.81■■□□□ 1.08
HDDC3-201ENST00000330334 MYH2Q9UKX2 1941 aa21.8■■□□□ 1.08
HDDC3-201ENST00000330334 PHF20L1A8MW92 1017 aa21.8■■□□□ 1.08
HDDC3-201ENST00000330334 CEP85Q6P2H3 762 aa21.8■■□□□ 1.08
HDDC3-201ENST00000330334 TBC1D9Q6ZT07 1266 aa21.8■■□□□ 1.08
HDDC3-201ENST00000330334 KCNH4Q9UQ05 1017 aa21.8■■□□□ 1.08
HDDC3-201ENST00000330334 TAF1CQ15572 869 aaPredicted RBP21.79■■□□□ 1.08
HDDC3-201ENST00000330334 SH3BP5LQ7L8J4 393 aa21.79■■□□□ 1.08
HDDC3-201ENST00000330334 OTOP1Q7RTM1 612 aa21.79■■□□□ 1.08
HDDC3-201ENST00000330334 PANK1Q8TE04 598 aa21.79■■□□□ 1.08
HDDC3-201ENST00000330334 DBNDD2Q9BQY9 259 aa21.79■■□□□ 1.08
HDDC3-201ENST00000330334 DDX4Q9NQI0 724 aaKnown RBP21.79■■□□□ 1.08
HDDC3-201ENST00000330334 RAI14Q9P0K7 980 aa21.79■■□□□ 1.08
HDDC3-201ENST00000330334 LRP2BPQ9P2M1 347 aa21.79■■□□□ 1.08
HDDC3-201ENST00000330334 BTBD19C9JJ37 291 aa21.78■■□□□ 1.08
HDDC3-201ENST00000330334 TTC39AQ5SRH9 613 aa21.78■■□□□ 1.08
HDDC3-201ENST00000330334 TRIM17Q9Y577 477 aa21.78■■□□□ 1.08
HDDC3-201ENST00000330334 DDTLA6NHG4 134 aaPredicted RBP21.77■■□□□ 1.08
HDDC3-201ENST00000330334 CXCL11O14625 94 aa21.77■■□□□ 1.08
HDDC3-201ENST00000330334 TBC1D12O60347 775 aa21.77■■□□□ 1.08
HDDC3-201ENST00000330334 ARHGEF6Q15052 776 aa21.77■■□□□ 1.08
HDDC3-201ENST00000330334 ZSCAN29Q8IWY8 852 aaPredicted RBP21.77■■□□□ 1.08
HDDC3-201ENST00000330334 HTTP42858 3142 aa21.77■■□□□ 1.08
HDDC3-201ENST00000330334 TLR2O60603 784 aa21.76■■□□□ 1.07
HDDC3-201ENST00000330334 ANKRD23Q86SG2 305 aa21.76■■□□□ 1.07
HDDC3-201ENST00000330334 ERC1Q8IUD2 1116 aa21.76■■□□□ 1.07
HDDC3-201ENST00000330334 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.76■■□□□ 1.07
HDDC3-201ENST00000330334 CD99L2Q8TCZ2 262 aa21.76■■□□□ 1.07
HDDC3-201ENST00000330334 EFCC1Q9HA90 598 aa21.76■■□□□ 1.07
HDDC3-201ENST00000330334 CTNND1O60716 968 aaKnown RBP21.75■■□□□ 1.07
HDDC3-201ENST00000330334 PPP4CP60510 307 aa21.75■■□□□ 1.07
HDDC3-201ENST00000330334 HSP90AB4PQ58FF6 505 aa21.75■■□□□ 1.07
HDDC3-201ENST00000330334 SCYL3Q8IZE3 742 aa21.75■■□□□ 1.07
HDDC3-201ENST00000330334 EAF2Q96CJ1 260 aaPredicted RBP21.75■■□□□ 1.07
HDDC3-201ENST00000330334 DBNLQ9UJU6 430 aaKnown RBP21.75■■□□□ 1.07
HDDC3-201ENST00000330334 PTPN22Q9Y2R2 807 aa21.75■■□□□ 1.07
HDDC3-201ENST00000330334 CYP2E1P05181 493 aaPredicted RBP21.74■■□□□ 1.07
HDDC3-201ENST00000330334 PICALMQ13492 652 aa21.74■■□□□ 1.07
HDDC3-201ENST00000330334 RPAP2Q8IXW5 612 aaPredicted RBP21.74■■□□□ 1.07
HDDC3-201ENST00000330334 CHMP4BQ9H444 224 aaKnown RBP21.74■■□□□ 1.07
HDDC3-201ENST00000330334 SNRKQ9NRH2 765 aa21.74■■□□□ 1.07
HDDC3-201ENST00000330334 DDX19BQ9UMR2 479 aa21.74■■□□□ 1.07
HDDC3-201ENST00000330334 COL2A1P02458 1487 aaPredicted RBP21.74■■□□□ 1.07
HDDC3-201ENST00000330334 AK9Q5TCS8 1911 aa21.73■■□□□ 1.07
HDDC3-201ENST00000330334 BAG3O95817 575 aa21.73■■□□□ 1.07
HDDC3-201ENST00000330334 PLCG2P16885 1265 aa21.73■■□□□ 1.07
HDDC3-201ENST00000330334 PTPRAP18433 802 aa21.73■■□□□ 1.07
HDDC3-201ENST00000330334 SOX10P56693 466 aa21.73■■□□□ 1.07
HDDC3-201ENST00000330334 MOGSQ13724 837 aa21.73■■□□□ 1.07
HDDC3-201ENST00000330334 NAA16Q6N069 864 aaPredicted RBP21.73■■□□□ 1.07
HDDC3-201ENST00000330334 NOL10Q9BSC4 688 aaKnown RBP21.73■■□□□ 1.07
HDDC3-201ENST00000330334 PICK1Q9NRD5 415 aa21.73■■□□□ 1.07
HDDC3-201ENST00000330334 ZBTB40Q9NUA8 1239 aa21.73■■□□□ 1.07
HDDC3-201ENST00000330334 TMED8Q6PL24 325 aaPredicted RBP21.72■■□□□ 1.07
HDDC3-201ENST00000330334 CCDC8Q9H0W5 538 aaPredicted RBP21.72■■□□□ 1.07
HDDC3-201ENST00000330334 OSBPL5Q9H0X9 879 aaPredicted RBP21.72■■□□□ 1.07
HDDC3-201ENST00000330334 RCAN3Q9UKA8 241 aa21.72■■□□□ 1.07
HDDC3-201ENST00000330334 ZHX2Q9Y6X8 837 aa21.72■■□□□ 1.07
HDDC3-201ENST00000330334 ZAP70P43403 619 aa21.71■■□□□ 1.07
HDDC3-201ENST00000330334 C17orf99Q6UX52 265 aa21.71■■□□□ 1.07
HDDC3-201ENST00000330334 FASTKD5Q7L8L6 764 aaKnown RBP21.71■■□□□ 1.07
HDDC3-201ENST00000330334 AFG3L2Q9Y4W6 797 aa21.71■■□□□ 1.07
HDDC3-201ENST00000330334 PDHXO00330 501 aa21.7■■□□□ 1.06
HDDC3-201ENST00000330334 GNRH1P01148 92 aa21.7■■□□□ 1.06
HDDC3-201ENST00000330334 CAP1Q01518 475 aa21.7■■□□□ 1.06
HDDC3-201ENST00000330334 TEX11Q8IYF3 940 aa21.7■■□□□ 1.06
HDDC3-201ENST00000330334 DHX36Q9H2U1 1008 aaKnown RBP21.7■■□□□ 1.06
HDDC3-201ENST00000330334 TLR7Q9NYK1 1049 aaKnown RBP21.7■■□□□ 1.06
HDDC3-201ENST00000330334 EXOC6BQ9Y2D4 811 aa21.7■■□□□ 1.06
HDDC3-201ENST00000330334 A0A0G2JLL6 359 aaPredicted RBP21.69■■□□□ 1.06
HDDC3-201ENST00000330334 TNRC18O15417 2968 aaPredicted RBP21.69■■□□□ 1.06
HDDC3-201ENST00000330334 HMMRO75330 724 aa21.69■■□□□ 1.06
HDDC3-201ENST00000330334 LACTBP83111 547 aaPredicted RBP21.69■■□□□ 1.06
HDDC3-201ENST00000330334 GPAT2Q6NUI2 795 aa21.69■■□□□ 1.06
HDDC3-201ENST00000330334 PRRT2Q7Z6L0 340 aaPredicted RBP21.69■■□□□ 1.06
HDDC3-201ENST00000330334 SH3RF3Q8TEJ3 882 aaPredicted RBP21.69■■□□□ 1.06
HDDC3-201ENST00000330334 ARMC5Q96C12 935 aa21.69■■□□□ 1.06
HDDC3-201ENST00000330334 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.69■■□□□ 1.06
HDDC3-201ENST00000330334 PI4KBQ9UBF8 816 aa21.69■■□□□ 1.06
HDDC3-201ENST00000330334 HERC5Q9UII4 1024 aaKnown RBP21.69■■□□□ 1.06
HDDC3-201ENST00000330334 DOCK2Q92608 1830 aa21.69■■□□□ 1.06
HDDC3-201ENST00000330334 CENPFP49454 3210 aa21.68■■□□□ 1.06
HDDC3-201ENST00000330334 KIF22Q14807 665 aa21.68■■□□□ 1.06
HDDC3-201ENST00000330334 CERS3Q8IU89 383 aa21.68■■□□□ 1.06
HDDC3-201ENST00000330334 RHPN1Q8TCX5 695 aa21.68■■□□□ 1.06
HDDC3-201ENST00000330334 PIH1D3Q9NQM4 214 aaKnown RBP21.68■■□□□ 1.06
HDDC3-201ENST00000330334 AATFQ9NY61 560 aaKnown RBP eCLIP21.68■■□□□ 1.06
HDDC3-201ENST00000330334 COG6Q9Y2V7 657 aa21.68■■□□□ 1.06
HDDC3-201ENST00000330334 SLC45A1Q9Y2W3 748 aa21.68■■□□□ 1.06
HDDC3-201ENST00000330334 ADGRA2Q96PE1 1338 aa21.67■■□□□ 1.06
HDDC3-201ENST00000330334 PDE3AQ14432 1141 aa21.67■■□□□ 1.06
HDDC3-201ENST00000330334 AACSQ86V21 672 aa21.67■■□□□ 1.06
HDDC3-201ENST00000330334 METTL16Q86W50 562 aaKnown RBP21.67■■□□□ 1.06
HDDC3-201ENST00000330334 SIRT2Q8IXJ6 389 aa21.67■■□□□ 1.06
HDDC3-201ENST00000330334 TBC1D2Q9BYX2 928 aa21.67■■□□□ 1.06
HDDC3-201ENST00000330334 SLURP2P0DP57 97 aa21.66■■□□□ 1.06
HDDC3-201ENST00000330334 PRMT2P55345 433 aa21.66■■□□□ 1.06
HDDC3-201ENST00000330334 ADGRA1Q86SQ6 560 aa21.66■■□□□ 1.06
HDDC3-201ENST00000330334 KIF1BPQ96EK5 621 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms