RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 PPATQ06203 517 aa23.99■■□□□ 1.43
LIME1-201ENST00000309546 CCDC158Q5M9N0 1113 aa23.99■■□□□ 1.43
LIME1-201ENST00000309546 OTOP1Q7RTM1 612 aa23.99■■□□□ 1.43
LIME1-201ENST00000309546 ZNF384Q8TF68 577 aa23.99■■□□□ 1.43
LIME1-201ENST00000309546 NSUN4Q96CB9 384 aaKnown RBP23.99■■□□□ 1.43
LIME1-201ENST00000309546 DDX4Q9NQI0 724 aaKnown RBP23.99■■□□□ 1.43
LIME1-201ENST00000309546 SNRKQ9NRH2 765 aa23.99■■□□□ 1.43
LIME1-201ENST00000309546 LRP2BPQ9P2M1 347 aa23.99■■□□□ 1.43
LIME1-201ENST00000309546 GPR75-ASB3A0A0A6YYF3 556 aa23.98■■□□□ 1.43
LIME1-201ENST00000309546 LDHCP07864 332 aa23.98■■□□□ 1.43
LIME1-201ENST00000309546 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.98■■□□□ 1.43
LIME1-201ENST00000309546 ATRNL1Q5VV63 1379 aa23.98■■□□□ 1.43
LIME1-201ENST00000309546 BTBD19C9JJ37 291 aa23.97■■□□□ 1.43
LIME1-201ENST00000309546 NOL9Q5SY16 702 aaKnown RBP23.97■■□□□ 1.43
LIME1-201ENST00000309546 CEP85Q6P2H3 762 aa23.97■■□□□ 1.43
LIME1-201ENST00000309546 SH3BP5LQ7L8J4 393 aa23.97■■□□□ 1.43
LIME1-201ENST00000309546 MYO5AQ9Y4I1 1855 aaKnown RBP23.97■■□□□ 1.43
LIME1-201ENST00000309546 DOCK1Q14185 1865 aa23.96■■□□□ 1.43
LIME1-201ENST00000309546 DDTLA6NHG4 134 aaPredicted RBP23.96■■□□□ 1.43
LIME1-201ENST00000309546 RHBDL3P58872 404 aa23.96■■□□□ 1.43
LIME1-201ENST00000309546 NOP58Q9Y2X3 529 aaKnown RBP23.96■■□□□ 1.43
LIME1-201ENST00000309546 EFCC1Q9HA90 598 aa23.95■■□□□ 1.42
LIME1-201ENST00000309546 SLURP2P0DP57 97 aa23.94■■□□□ 1.42
LIME1-201ENST00000309546 NOL10Q9BSC4 688 aaKnown RBP23.94■■□□□ 1.42
LIME1-201ENST00000309546 CCDC8Q9H0W5 538 aaPredicted RBP23.94■■□□□ 1.42
LIME1-201ENST00000309546 TLR7Q9NYK1 1049 aaKnown RBP23.94■■□□□ 1.42
LIME1-201ENST00000309546 ZSWIM8A7E2V4 1837 aa23.94■■□□□ 1.42
LIME1-201ENST00000309546 MS4A1P11836 297 aa23.93■■□□□ 1.42
LIME1-201ENST00000309546 NAA16Q6N069 864 aaPredicted RBP23.93■■□□□ 1.42
LIME1-201ENST00000309546 SCYL3Q8IZE3 742 aa23.93■■□□□ 1.42
LIME1-201ENST00000309546 ZCCHC17Q9NP64 241 aaKnown RBP23.93■■□□□ 1.42
LIME1-201ENST00000309546 PICK1Q9NRD5 415 aa23.93■■□□□ 1.42
LIME1-201ENST00000309546 DBNLQ9UJU6 430 aaKnown RBP23.93■■□□□ 1.42
LIME1-201ENST00000309546 EXOC6BQ9Y2D4 811 aa23.93■■□□□ 1.42
LIME1-201ENST00000309546 PTPN22Q9Y2R2 807 aa23.93■■□□□ 1.42
LIME1-201ENST00000309546 PHF20L1A8MW92 1017 aa23.92■■□□□ 1.42
LIME1-201ENST00000309546 CAP1Q01518 475 aa23.92■■□□□ 1.42
LIME1-201ENST00000309546 TEX11Q8IYF3 940 aa23.92■■□□□ 1.42
LIME1-201ENST00000309546 KCNH4Q9UQ05 1017 aa23.92■■□□□ 1.42
LIME1-201ENST00000309546 TLR2O60603 784 aa23.91■■□□□ 1.42
LIME1-201ENST00000309546 ZAP70P43403 619 aa23.91■■□□□ 1.42
LIME1-201ENST00000309546 EAF2Q96CJ1 260 aaPredicted RBP23.91■■□□□ 1.42
LIME1-201ENST00000309546 CDK5RAP2Q96SN8 1893 aa23.91■■□□□ 1.42
LIME1-201ENST00000309546 FAM196BA6NMK8 535 aa23.9■■□□□ 1.42
LIME1-201ENST00000309546 PDHXO00330 501 aa23.9■■□□□ 1.42
LIME1-201ENST00000309546 MAP4K4O95819 1239 aaPredicted RBP23.9■■□□□ 1.42
LIME1-201ENST00000309546 CYP2E1P05181 493 aaPredicted RBP23.9■■□□□ 1.42
LIME1-201ENST00000309546 ANKRD23Q86SG2 305 aa23.9■■□□□ 1.42
LIME1-201ENST00000309546 SH3RF3Q8TEJ3 882 aaPredicted RBP23.9■■□□□ 1.42
LIME1-201ENST00000309546 AATFQ9NY61 560 aaKnown RBP eCLIP23.9■■□□□ 1.42
LIME1-201ENST00000309546 COG6Q9Y2V7 657 aa23.9■■□□□ 1.42
LIME1-201ENST00000309546 ZHX2Q9Y6X8 837 aa23.9■■□□□ 1.42
LIME1-201ENST00000309546 ATAD5Q96QE3 1844 aa23.89■■□□□ 1.42
LIME1-201ENST00000309546 PTPRFP10586 1907 aa23.89■■□□□ 1.42
LIME1-201ENST00000309546 NPM3O75607 178 aaKnown RBP23.89■■□□□ 1.41
LIME1-201ENST00000309546 ECM2O94769 699 aaPredicted RBP23.89■■□□□ 1.41
LIME1-201ENST00000309546 PTPRAP18433 802 aa23.89■■□□□ 1.41
LIME1-201ENST00000309546 ARHGEF6Q15052 776 aa23.89■■□□□ 1.41
LIME1-201ENST00000309546 ERC1Q8IUD2 1116 aa23.89■■□□□ 1.41
LIME1-201ENST00000309546 ZNF512BQ96KM6 892 aaPredicted RBP23.89■■□□□ 1.41
LIME1-201ENST00000309546 OSBPL5Q9H0X9 879 aaPredicted RBP23.89■■□□□ 1.41
LIME1-201ENST00000309546 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.89■■□□□ 1.412e-6■■■■■ 27.8
LIME1-201ENST00000309546 PHIPQ8WWQ0 1821 aa23.89■■□□□ 1.41
LIME1-201ENST00000309546 COL2A1P02458 1487 aaPredicted RBP23.88■■□□□ 1.41
LIME1-201ENST00000309546 BAG3O95817 575 aa23.88■■□□□ 1.41
LIME1-201ENST00000309546 AACSQ86V21 672 aa23.88■■□□□ 1.41
LIME1-201ENST00000309546 PIH1D3Q9NQM4 214 aaKnown RBP23.88■■□□□ 1.41
LIME1-201ENST00000309546 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.88■■□□□ 1.41
LIME1-201ENST00000309546 RCAN3Q9UKA8 241 aa23.88■■□□□ 1.41
LIME1-201ENST00000309546 DDX19BQ9UMR2 479 aa23.88■■□□□ 1.41
LIME1-201ENST00000309546 FOCADQ5VW36 1801 aa23.87■■□□□ 1.41
LIME1-201ENST00000309546 CXCL11O14625 94 aa23.87■■□□□ 1.41
LIME1-201ENST00000309546 CTNND1O60716 968 aaKnown RBP23.87■■□□□ 1.41
LIME1-201ENST00000309546 MAP3K10Q02779 954 aa23.87■■□□□ 1.41
LIME1-201ENST00000309546 MOGSQ13724 837 aa23.87■■□□□ 1.41
LIME1-201ENST00000309546 KIF22Q14807 665 aa23.87■■□□□ 1.41
LIME1-201ENST00000309546 ADGRA1Q86SQ6 560 aa23.87■■□□□ 1.41
LIME1-201ENST00000309546 CPA4Q9UI42 421 aa23.87■■□□□ 1.41
LIME1-201ENST00000309546 APBB1O00213 710 aa23.86■■□□□ 1.41
LIME1-201ENST00000309546 GADL1Q6ZQY3 521 aa23.86■■□□□ 1.41
LIME1-201ENST00000309546 CCDC84Q86UT8 332 aaPredicted RBP23.86■■□□□ 1.41
LIME1-201ENST00000309546 ARHGAP39Q9C0H5 1083 aa23.86■■□□□ 1.41
LIME1-201ENST00000309546 IL1RAPL2Q9NP60 686 aa23.86■■□□□ 1.41
LIME1-201ENST00000309546 NDUFB9Q9Y6M9 179 aa23.86■■□□□ 1.41
LIME1-201ENST00000309546 SIPA1L1O43166 1804 aa23.85■■□□□ 1.41
LIME1-201ENST00000309546 TBC1D12O60347 775 aa23.85■■□□□ 1.41
LIME1-201ENST00000309546 IDH1O75874 414 aaKnown RBP23.85■■□□□ 1.41
LIME1-201ENST00000309546 PLCG2P16885 1265 aa23.85■■□□□ 1.41
LIME1-201ENST00000309546 LACTBP83111 547 aaPredicted RBP23.85■■□□□ 1.41
LIME1-201ENST00000309546 HSP90AB4PQ58FF6 505 aa23.85■■□□□ 1.41
LIME1-201ENST00000309546 BCL11AQ9H165 835 aa23.85■■□□□ 1.41
LIME1-201ENST00000309546 A0A0G2JLL6 359 aaPredicted RBP23.84■■□□□ 1.41
LIME1-201ENST00000309546 TRIM75PA6NK02 468 aa23.84■■□□□ 1.41
LIME1-201ENST00000309546 PRRT2Q7Z6L0 340 aaPredicted RBP23.84■■□□□ 1.41
LIME1-201ENST00000309546 MAPKAPK5Q8IW41 473 aa23.84■■□□□ 1.41
LIME1-201ENST00000309546 TGFBRAP1Q8WUH2 860 aa23.84■■□□□ 1.41
LIME1-201ENST00000309546 PARK7Q99497 189 aaKnown RBP23.84■■□□□ 1.41
LIME1-201ENST00000309546 AFG3L2Q9Y4W6 797 aa23.84■■□□□ 1.41
LIME1-201ENST00000309546 PTCH2Q9Y6C5 1203 aa23.84■■□□□ 1.41
LIME1-201ENST00000309546 HTTP42858 3142 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms