RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 DOK7Q18PE1 504 aa18.27■□□□□ 0.52
LSM6-201ENST00000296581 NOL10Q9BSC4 688 aaKnown RBP18.27■□□□□ 0.52
LSM6-201ENST00000296581 ARPP21Q9UBL0 812 aaPredicted RBP18.27■□□□□ 0.52
LSM6-201ENST00000296581 USP17L12C9JPN9 530 aa18.26■□□□□ 0.51
LSM6-201ENST00000296581 USP17L21D6R901 530 aa18.26■□□□□ 0.51
LSM6-201ENST00000296581 DTNBO60941 627 aa18.26■□□□□ 0.51
LSM6-201ENST00000296581 CTDNEP1O95476 244 aa18.26■□□□□ 0.51
LSM6-201ENST00000296581 FOXD4L5Q5VV16 416 aaPredicted RBP18.26■□□□□ 0.51
LSM6-201ENST00000296581 PODNQ7Z5L7 613 aa18.26■□□□□ 0.51
LSM6-201ENST00000296581 NSUN7Q8NE18 718 aaKnown RBP18.26■□□□□ 0.51
LSM6-201ENST00000296581 SH3RF3Q8TEJ3 882 aaPredicted RBP18.26■□□□□ 0.51
LSM6-201ENST00000296581 FOXD4L4Q8WXT5 416 aaPredicted RBP18.26■□□□□ 0.51
LSM6-201ENST00000296581 HPS5Q9UPZ3 1129 aa18.26■□□□□ 0.51
LSM6-201ENST00000296581 MTMR6Q9Y217 621 aa18.26■□□□□ 0.51
LSM6-201ENST00000296581 NAV1Q8NEY1 1877 aa18.26■□□□□ 0.51
LSM6-201ENST00000296581 ZNF646O15015 1829 aaPredicted RBP18.26■□□□□ 0.51
LSM6-201ENST00000296581 GOLGA6L22H0YM25 854 aa18.26■□□□□ 0.51
LSM6-201ENST00000296581 JAK2O60674 1132 aa18.26■□□□□ 0.51
LSM6-201ENST00000296581 LIFRP42702 1097 aa18.26■□□□□ 0.51
LSM6-201ENST00000296581 SGMS1Q86VZ5 419 aa18.26■□□□□ 0.51
LSM6-201ENST00000296581 CYP2D7A0A087X1C5 515 aa18.25■□□□□ 0.51
LSM6-201ENST00000296581 CCT2P78371 535 aaKnown RBP18.25■□□□□ 0.51
LSM6-201ENST00000296581 LARP1BQ659C4 914 aaKnown RBP18.25■□□□□ 0.51
LSM6-201ENST00000296581 CERS5Q8N5B7 392 aa18.25■□□□□ 0.51
LSM6-201ENST00000296581 LY9Q9HBG7 655 aa18.25■□□□□ 0.51
LSM6-201ENST00000296581 SMIM22K7EJ46 135 aa18.25■□□□□ 0.51
LSM6-201ENST00000296581 BTDP43251 543 aa18.25■□□□□ 0.51
LSM6-201ENST00000296581 GRIPAP1Q4V328 841 aa18.25■□□□□ 0.51
LSM6-201ENST00000296581 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.25■□□□□ 0.51
LSM6-201ENST00000296581 GOLGA8BA8MQT2 603 aa18.24■□□□□ 0.51
LSM6-201ENST00000296581 G3V3G9 751 aa18.24■□□□□ 0.51
LSM6-201ENST00000296581 F13A1P00488 732 aa18.24■□□□□ 0.51
LSM6-201ENST00000296581 HMGN5P82970 282 aaKnown RBP18.24■□□□□ 0.51
LSM6-201ENST00000296581 TMEM67Q5HYA8 995 aa18.24■□□□□ 0.51
LSM6-201ENST00000296581 RRP12Q5JTH9 1297 aaKnown RBP18.24■□□□□ 0.51
LSM6-201ENST00000296581 DCAF8Q5TAQ9 597 aa18.24■□□□□ 0.51
LSM6-201ENST00000296581 TTLL6Q8N841 843 aa18.24■□□□□ 0.51
LSM6-201ENST00000296581 ESR2Q92731 530 aa18.24■□□□□ 0.51
LSM6-201ENST00000296581 NCOA5Q9HCD5 579 aaKnown RBP18.24■□□□□ 0.51
LSM6-201ENST00000296581 ZNF219Q9P2Y4 722 aaPredicted RBP18.24■□□□□ 0.51
LSM6-201ENST00000296581 NAP1L2Q9ULW6 460 aaPredicted RBP18.24■□□□□ 0.51
LSM6-201ENST00000296581 DDX60LQ5H9U9 1706 aaKnown RBP18.24■□□□□ 0.51
LSM6-201ENST00000296581 FOCADQ5VW36 1801 aa18.24■□□□□ 0.51
LSM6-201ENST00000296581 PLCG2P16885 1265 aa18.24■□□□□ 0.51
LSM6-201ENST00000296581 KCNA3P22001 575 aa18.24■□□□□ 0.51
LSM6-201ENST00000296581 MCTP1Q6DN14 999 aa18.24■□□□□ 0.51
LSM6-201ENST00000296581 SUPT20HQ8NEM7 779 aa18.24■□□□□ 0.51
LSM6-201ENST00000296581 TOMM22Q9NS69 142 aa18.24■□□□□ 0.51
LSM6-201ENST00000296581 SCN9AQ15858 1988 aa18.23■□□□□ 0.51
LSM6-201ENST00000296581 PTPDC1A2A3K4 754 aa18.23■□□□□ 0.51
LSM6-201ENST00000296581 IFIT3O14879 490 aaKnown RBP18.23■□□□□ 0.51
LSM6-201ENST00000296581 ORC4O43929 436 aa18.23■□□□□ 0.51
LSM6-201ENST00000296581 USP5P45974 858 aa18.23■□□□□ 0.51
LSM6-201ENST00000296581 FKBP1AP62942 108 aaKnown RBP18.23■□□□□ 0.51
LSM6-201ENST00000296581 SENP2Q9HC62 589 aa18.23■□□□□ 0.51
LSM6-201ENST00000296581 TRAK2O60296 914 aa18.23■□□□□ 0.51
LSM6-201ENST00000296581 DPEP1P16444 411 aa18.23■□□□□ 0.51
LSM6-201ENST00000296581 RHBDL3P58872 404 aa18.23■□□□□ 0.51
LSM6-201ENST00000296581 KIAA2012Q0VF49 1180 aa18.23■□□□□ 0.51
LSM6-201ENST00000296581 APOA5Q6Q788 366 aa18.23■□□□□ 0.51
LSM6-201ENST00000296581 DBNDD1Q9H9R9 158 aa18.23■□□□□ 0.51
LSM6-201ENST00000296581 MCM9Q9NXL9 1143 aa18.23■□□□□ 0.51
LSM6-201ENST00000296581 ROBO3Q96MS0 1386 aa18.22■□□□□ 0.51
LSM6-201ENST00000296581 DHX16O60231 1041 aaKnown RBP18.22■□□□□ 0.51
LSM6-201ENST00000296581 SLC3A2P08195 630 aaKnown RBP18.22■□□□□ 0.51
LSM6-201ENST00000296581 CYP2D6P10635 497 aa18.22■□□□□ 0.51
LSM6-201ENST00000296581 SART3Q15020 963 aaKnown RBP18.22■□□□□ 0.51
LSM6-201ENST00000296581 STK11IPQ8N1F8 1099 aa18.22■□□□□ 0.51
LSM6-201ENST00000296581 FBXW7Q969H0 707 aa18.22■□□□□ 0.51
LSM6-201ENST00000296581 MTFR1LQ9H019 292 aa18.22■□□□□ 0.51
LSM6-201ENST00000296581 DAGLAQ9Y4D2 1042 aa18.22■□□□□ 0.51
LSM6-201ENST00000296581 NID2Q14112 1375 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 C21orf2O43822 256 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 ZBTB7AO95365 584 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 C12orf60Q5U649 245 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 STRIP1Q5VSL9 837 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 CHAMP1Q96JM3 812 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 VPS37CA5D8V6 355 aaPredicted RBP18.21■□□□□ 0.51
LSM6-201ENST00000296581 ECE2O60344 883 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 USP17L8P0C7I0 530 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 NT5C2P49902 561 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 EVX2Q03828 476 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 CCDC93Q567U6 631 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 TMTC2Q8N394 836 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 TGFBRAP1Q8WUH2 860 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 DDX11Q96FC9 970 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 LMBRD1Q9NUN5 540 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 KIF3AQ9Y496 699 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 ATP6V1DQ9Y5K8 247 aa18.21■□□□□ 0.51
LSM6-201ENST00000296581 WTAPQ15007 396 aa18.2■□□□□ 0.5
LSM6-201ENST00000296581 SEC23AQ15436 765 aa18.2■□□□□ 0.5
LSM6-201ENST00000296581 SKOR2Q2VWA4 1001 aaPredicted RBP18.2■□□□□ 0.5
LSM6-201ENST00000296581 TEX11Q8IYF3 940 aa18.2■□□□□ 0.5
LSM6-201ENST00000296581 FAM184AQ8NB25 1140 aa18.2■□□□□ 0.5
LSM6-201ENST00000296581 TTF2Q9UNY4 1162 aaKnown RBP18.2■□□□□ 0.5
LSM6-201ENST00000296581 TCHHQ07283 1943 aa18.2■□□□□ 0.5
LSM6-201ENST00000296581 ERICH2A1L162 156 aa18.2■□□□□ 0.5
LSM6-201ENST00000296581 AOC3Q16853 763 aa18.2■□□□□ 0.5
LSM6-201ENST00000296581 NFXL1Q6ZNB6 911 aa18.2■□□□□ 0.5
LSM6-201ENST00000296581 CDC37L1Q7L3B6 337 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms